Download biojava3-alignment-3.0.5.jar
biojava3/biojava3-alignment-3.0.5.jar.zip( 170 k)
The download jar file contains the following class files or Java source files.
AAINDEX.txt
META-INF/MANIFEST.MF
META-INF/maven/org.biojava/biojava3-alignment/pom.properties
META-INF/maven/org.biojava/biojava3-alignment/pom.xml
blosum100.txt
blosum30.txt
blosum35.txt
blosum40.txt
blosum45.txt
blosum50.txt
blosum55.txt
blosum60.txt
blosum62.txt
blosum65.txt
blosum70.txt
blosum75.txt
blosum80.txt
blosum85.txt
blosum90.txt
demo.CookbookMSA.class
demo.DemoLoadSubstMax.class
demo.TestDNANeedlemanWunsch.class
gonnet250.txt
nuc-4_2.txt
nuc-4_4.txt
org.biojava3.alignment.Alignments.class
org.biojava3.alignment.FractionalIdentityInProfileScorer.class
org.biojava3.alignment.FractionalIdentityScorer.class
org.biojava3.alignment.FractionalSimilarityInProfileScorer.class
org.biojava3.alignment.FractionalSimilarityScorer.class
org.biojava3.alignment.GuideTree.class
org.biojava3.alignment.NeedlemanWunsch.class
org.biojava3.alignment.SimpleAlignedSequence.class
org.biojava3.alignment.SimpleGapPenalty.class
org.biojava3.alignment.SimpleProfile.class
org.biojava3.alignment.SimpleProfilePair.class
org.biojava3.alignment.SimpleProfileProfileAligner.class
org.biojava3.alignment.SimpleSequencePair.class
org.biojava3.alignment.SimpleSubstitutionMatrix.class
org.biojava3.alignment.SmithWaterman.class
org.biojava3.alignment.StandardRescoreRefiner.class
org.biojava3.alignment.SubstitutionMatrixHelper.class
org.biojava3.alignment.aaindex.AAIndexFileParser.class
org.biojava3.alignment.aaindex.AAIndexProvider.class
org.biojava3.alignment.aaindex.AAindexFactory.class
org.biojava3.alignment.aaindex.DefaultAAIndexProvider.class
org.biojava3.alignment.aaindex.ScaledSubstitutionMatrix.class
org.biojava3.alignment.io.StockholmConsensusAnnotation.class
org.biojava3.alignment.io.StockholmFileAnnotation.class
org.biojava3.alignment.io.StockholmFileParser.class
org.biojava3.alignment.io.StockholmResidueAnnotation.class
org.biojava3.alignment.io.StockholmSequenceAnnotation.class
org.biojava3.alignment.io.StockholmStructure.class
org.biojava3.alignment.routines.AlignerHelper.class
org.biojava3.alignment.routines.AnchoredPairwiseSequenceAligner.class
org.biojava3.alignment.routines.GuanUberbacher.class
org.biojava3.alignment.template.AbstractMatrixAligner.class
org.biojava3.alignment.template.AbstractPairwiseSequenceAligner.class
org.biojava3.alignment.template.AbstractProfileProfileAligner.class
org.biojava3.alignment.template.AbstractScorer.class
org.biojava3.alignment.template.AlignedSequence.class
org.biojava3.alignment.template.Aligner.class
org.biojava3.alignment.template.CallablePairwiseSequenceAligner.class
org.biojava3.alignment.template.CallablePairwiseSequenceScorer.class
org.biojava3.alignment.template.CallableProfileProfileAligner.class
org.biojava3.alignment.template.GapPenalty.class
org.biojava3.alignment.template.GuideTreeNode.class
org.biojava3.alignment.template.HierarchicalClusterer.class
org.biojava3.alignment.template.MatrixAligner.class
org.biojava3.alignment.template.MutableAlignedSequence.class
org.biojava3.alignment.template.MutableProfile.class
org.biojava3.alignment.template.MutableProfilePair.class
org.biojava3.alignment.template.MutableSequencePair.class
org.biojava3.alignment.template.PairInProfileScorer.class
org.biojava3.alignment.template.PairwiseSequenceAligner.class
org.biojava3.alignment.template.PairwiseSequenceScorer.class
org.biojava3.alignment.template.PartitionRefiner.class
org.biojava3.alignment.template.Profile.class
org.biojava3.alignment.template.ProfilePair.class
org.biojava3.alignment.template.ProfileProfileAligner.class
org.biojava3.alignment.template.ProfileProfileScorer.class
org.biojava3.alignment.template.ProfileView.class
org.biojava3.alignment.template.RescoreRefiner.class
org.biojava3.alignment.template.Scorer.class
org.biojava3.alignment.template.SequencePair.class
org.biojava3.alignment.template.SubstitutionMatrix.class
pam250.txt
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