Download micommons-0.9-sources.jar
micommons/micommons-0.9-sources.jar.zip( 130 k)
The download jar file contains the following class files or Java source files.
META-INF/MANIFEST.MF
com.milaboratory.core.sequence.AbstractSequenceBuilder.java
com.milaboratory.core.sequence.Alphabet.java
com.milaboratory.core.sequence.NucleotideSQPair.java
com.milaboratory.core.sequence.Sequence.java
com.milaboratory.core.sequence.SequenceBuilder.java
com.milaboratory.core.sequence.SequenceBuilderFactory.java
com.milaboratory.core.sequence.SequenceQuality.java
com.milaboratory.core.sequence.SequencingErrorType.java
com.milaboratory.core.sequence.aminoacid.AbstractAASequenceBuilder.java
com.milaboratory.core.sequence.aminoacid.AminoAcidAlphabet.java
com.milaboratory.core.sequence.aminoacid.AminoAcidSequence.java
com.milaboratory.core.sequence.aminoacid.AminoAcidSequenceImpl.java
com.milaboratory.core.sequence.aminoacid.CDRAminoAcidAlphabet.java
com.milaboratory.core.sequence.aminoacid.CDRAminoAcidSequence.java
com.milaboratory.core.sequence.aminoacid.CDRTriplet.java
com.milaboratory.core.sequence.aminoacid.Util.java
com.milaboratory.core.sequence.motif.LowQualityIndicator.java
com.milaboratory.core.sequence.motif.LowQualityIndicatorProvider.java
com.milaboratory.core.sequence.motif.NucleotideMotif.java
com.milaboratory.core.sequence.motif.NucleotideMotifBuilder.java
com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvanced.java
com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvancedWrapper.java
com.milaboratory.core.sequence.motif.NucleotideMotifSearchParameters.java
com.milaboratory.core.sequence.motif.NucleotideSQPairProvider.java
com.milaboratory.core.sequence.motif.NucleotideWildcards.java
com.milaboratory.core.sequence.motif.SSequencingReadBindings.java
com.milaboratory.core.sequence.nucleotide.NucleotideAlphabet.java
com.milaboratory.core.sequence.nucleotide.NucleotideAlphabetWithN.java
com.milaboratory.core.sequence.nucleotide.NucleotideSequence.java
com.milaboratory.core.sequence.nucleotide.NucleotideSequenceAggregator.java
com.milaboratory.core.sequence.nucleotide.NucleotideSequenceBuilder.java
com.milaboratory.core.sequence.nucleotide.NucleotideSequenceImpl.java
com.milaboratory.core.sequence.package-info.java
com.milaboratory.core.sequence.quality.SequenceQualityPhred.java
com.milaboratory.core.sequence.tree.DifferencePenalty.java
com.milaboratory.core.sequence.tree.LinearMinPenalty.java
com.milaboratory.core.sequence.tree.MutationGuide.java
com.milaboratory.core.sequence.tree.NucleotideSQPairSet.java
com.milaboratory.core.sequence.tree.NucleotideSQPairSetEvent.java
com.milaboratory.core.sequence.tree.NucleotideSQPairSetEventType.java
com.milaboratory.core.sequence.tree.NucleotideSQPairSetListener.java
com.milaboratory.core.sequence.tree.NucleotideSequencePenaltyTreeSet.java
com.milaboratory.core.sequence.tree.Penalty.java
com.milaboratory.core.sequence.tree.PenaltyUtils.java
com.milaboratory.core.sequence.tree.SequenceTreeMap.java
com.milaboratory.core.sequence.tree.TSSequenceTreeMap.java
com.milaboratory.core.sequence.util.NucleotideRCSequence.java
com.milaboratory.core.sequence.util.NucleotideSequenceGenerator.java
com.milaboratory.core.sequence.util.NucleotideSubSequence.java
com.milaboratory.core.sequence.util.SequenceMismatch.java
com.milaboratory.core.sequence.util.SequenceMismatchCollector.java
com.milaboratory.core.sequence.util.SequenceQualityUtils.java
com.milaboratory.core.sequence.util.SequencesUtils.java
com.milaboratory.core.sequence.util.SubSequenceQuality.java
com.milaboratory.core.sequence.util.Translator.java
com.milaboratory.core.sequencing.SequencingUtils.java
com.milaboratory.core.sequencing.WrongStructureException.java
com.milaboratory.core.sequencing.io.PSequencingDataReader.java
com.milaboratory.core.sequencing.io.SSequencingDataReader.java
com.milaboratory.core.sequencing.io.SSequencingDataReaderWithFlowgram.java
com.milaboratory.core.sequencing.io.SequencingDataReader.java
com.milaboratory.core.sequencing.io.fasta.FastaItem.java
com.milaboratory.core.sequencing.io.fasta.FastaItemsReader.java
com.milaboratory.core.sequencing.io.fasta.FastaReader.java
com.milaboratory.core.sequencing.io.fasta.FastaWriter.java
com.milaboratory.core.sequencing.io.fastq.Casava18InfoProvider.java
com.milaboratory.core.sequencing.io.fastq.IlluminaInfoProvider.java
com.milaboratory.core.sequencing.io.fastq.IlluminaInfoProviderFactory.java
com.milaboratory.core.sequencing.io.fastq.IlluminaReadInfo.java
com.milaboratory.core.sequencing.io.fastq.IlluminaReadInfoImpl.java
com.milaboratory.core.sequencing.io.fastq.NucleotideSQPairTrimmer.java
com.milaboratory.core.sequencing.io.fastq.PFastqReader.java
com.milaboratory.core.sequencing.io.fastq.PFastqWriter.java
com.milaboratory.core.sequencing.io.fastq.PSequencingReadsTrimmer.java
com.milaboratory.core.sequencing.io.fastq.PairedFiles.java
com.milaboratory.core.sequencing.io.fastq.QualityFormatGuesser.java
com.milaboratory.core.sequencing.io.fastq.SFastqReader.java
com.milaboratory.core.sequencing.io.fastq.SFastqWriter.java
com.milaboratory.core.sequencing.io.fastq.SSequencingReadTrimmer.java
com.milaboratory.core.sequencing.io.fastq.quality.AbstractSequenceQualityFactory.java
com.milaboratory.core.sequencing.io.fastq.quality.PhredSequenceQualityFactory.java
com.milaboratory.core.sequencing.io.fastq.quality.QualityStringFormat.java
com.milaboratory.core.sequencing.io.fastq.quality.SequenceQualityFactory.java
com.milaboratory.core.sequencing.io.fastq.quality.WrongQualityStringException.java
com.milaboratory.core.sequencing.io.sff.SFFClipper.java
com.milaboratory.core.sequencing.io.sff.SFFHeader.java
com.milaboratory.core.sequencing.io.sff.SFFRAWRead.java
com.milaboratory.core.sequencing.io.sff.SFFReader.java
com.milaboratory.core.sequencing.motif.NucleotideMotif.java
com.milaboratory.core.sequencing.motif.NucleotideMotifSearch.java
com.milaboratory.core.sequencing.motif.NucleotideMotifSearchOptions.java
com.milaboratory.core.sequencing.motif.NucleotideWildcards.java
com.milaboratory.core.sequencing.package-info.java
com.milaboratory.core.sequencing.read.PDataSerRecord.java
com.milaboratory.core.sequencing.read.PSequencingRead.java
com.milaboratory.core.sequencing.read.PSequencingReadImpl.java
com.milaboratory.core.sequencing.read.SSequencingRead.java
com.milaboratory.core.sequencing.read.SSequencingReadImpl.java
com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgram.java
com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgramImpl.java
com.milaboratory.core.sequencing.read.SequencingRead.java
com.milaboratory.util.Bit2Array.java
com.milaboratory.util.BitArray.java
com.milaboratory.util.ByteBufferHolder.java
com.milaboratory.util.ByteBufferHolderCache.java
com.milaboratory.util.CanReportProgress.java
com.milaboratory.util.CanReportProgressAndStage.java
com.milaboratory.util.CompressionType.java
com.milaboratory.util.CoordProxy.java
com.milaboratory.util.CountingInputStream.java
com.milaboratory.util.Factory.java
com.milaboratory.util.HashFunctions.java
com.milaboratory.util.IndexRange.java
com.milaboratory.util.InfiniteLongArray.java
com.milaboratory.util.IntArrayList.java
com.milaboratory.util.LongArrayList.java
com.milaboratory.util.Math.java
com.milaboratory.util.NullOutputStream.java
com.milaboratory.util.ProgressReporter.java
com.milaboratory.util.ProgressReporterFactory.java
com.milaboratory.util.SmartProgressReporter.java
com.milaboratory.util.TablePrintStreamAdapter.java
com.milaboratory.util.XMLException.java
Related examples in the same category