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Download picard-1.56.jar : picard « p « Jar File Download






Download picard-1.56.jar

picard/picard-1.56.jar.zip( 423 k)

The download jar file contains the following class files or Java source files.

META-INF/MANIFEST.MF
net.sf.picard.PicardException.class
net.sf.picard.analysis.AlignmentSummaryMetrics.class
net.sf.picard.analysis.CollectAlignmentSummaryMetrics.class
net.sf.picard.analysis.CollectGcBiasMetrics.class
net.sf.picard.analysis.CollectInsertSizeMetrics.class
net.sf.picard.analysis.CollectMultipleMetrics.class
net.sf.picard.analysis.CollectRnaSeqMetrics.class
net.sf.picard.analysis.GcBiasDetailMetrics.class
net.sf.picard.analysis.GcBiasSummaryMetrics.class
net.sf.picard.analysis.InsertSizeMetrics.class
net.sf.picard.analysis.MeanQualityByCycle.class
net.sf.picard.analysis.MetricAccumulationLevel.class
net.sf.picard.analysis.QualityScoreDistribution.class
net.sf.picard.analysis.RnaSeqMetrics.class
net.sf.picard.analysis.SinglePassSamProgram.class
net.sf.picard.analysis.directed.CalculateHsMetrics.class
net.sf.picard.analysis.directed.HsMetrics.class
net.sf.picard.analysis.directed.HsMetricsCalculator.class
net.sf.picard.annotation.AnnotationException.class
net.sf.picard.annotation.Gene.class
net.sf.picard.annotation.GeneAnnotationReader.class
net.sf.picard.annotation.LocusFunction.class
net.sf.picard.annotation.RefFlatReader.class
net.sf.picard.cmdline.CommandLineParseException.class
net.sf.picard.cmdline.CommandLineParser.class
net.sf.picard.cmdline.CommandLineParserDefinitionException.class
net.sf.picard.cmdline.CommandLineProgram.class
net.sf.picard.cmdline.CreateHtmlDocForProgram.class
net.sf.picard.cmdline.CreateHtmlDocForStandardOptions.class
net.sf.picard.cmdline.Option.class
net.sf.picard.cmdline.PositionalArguments.class
net.sf.picard.cmdline.StandardOptionDefinitions.class
net.sf.picard.cmdline.Usage.class
net.sf.picard.fastq.BamToBfq.class
net.sf.picard.fastq.BamToBfqWriter.class
net.sf.picard.fastq.FastqConstants.class
net.sf.picard.fastq.FastqReader.class
net.sf.picard.fastq.FastqRecord.class
net.sf.picard.fastq.FastqWriter.class
net.sf.picard.filter.AggregateFilter.class
net.sf.picard.filter.DuplicateReadFilter.class
net.sf.picard.filter.FailsVendorReadQualityFilter.class
net.sf.picard.filter.FilteringIterator.class
net.sf.picard.filter.IntervalFilter.class
net.sf.picard.filter.NotPrimaryAlignmentFilter.class
net.sf.picard.filter.SamRecordFilter.class
net.sf.picard.filter.SolexaNoiseFilter.class
net.sf.picard.filter.TagFilter.class
net.sf.picard.filter.WholeReadClippedFilter.class
net.sf.picard.illumina.BarcodeUtil.class
net.sf.picard.illumina.ExtractIlluminaBarcodes.class
net.sf.picard.illumina.IlluminaBasecallsToSam.class
net.sf.picard.illumina.IlluminaBasecallsToSamConverter.class
net.sf.picard.illumina.parser.AbstractIlluminaTextParser.class
net.sf.picard.illumina.parser.BarcodeParser.class
net.sf.picard.illumina.parser.CifParser.class
net.sf.picard.illumina.parser.ClusterData.class
net.sf.picard.illumina.parser.ClusterIntensityFileReader.class
net.sf.picard.illumina.parser.CnfParser.class
net.sf.picard.illumina.parser.CycleFileSetIterator.class
net.sf.picard.illumina.parser.FourChannelIntensityData.class
net.sf.picard.illumina.parser.IlluminaCycleFileSetParser.class
net.sf.picard.illumina.parser.IlluminaDataProvider.class
net.sf.picard.illumina.parser.IlluminaDataProviderFactory.class
net.sf.picard.illumina.parser.IlluminaDataType.class
net.sf.picard.illumina.parser.IlluminaFileNotFoundException.class
net.sf.picard.illumina.parser.IlluminaFileUtil.class
net.sf.picard.illumina.parser.IlluminaParser.class
net.sf.picard.illumina.parser.IntensityChannel.class
net.sf.picard.illumina.parser.QseqParser.class
net.sf.picard.illumina.parser.ReadConfiguration.class
net.sf.picard.illumina.parser.ReadData.class
net.sf.picard.illumina.parser.ReadType.class
net.sf.picard.illumina.parser.TiledIlluminaFile.class
net.sf.picard.io.FastLineReader.class
net.sf.picard.io.IoUtil.class
net.sf.picard.liftover.Chain.class
net.sf.picard.liftover.LiftOver.class
net.sf.picard.metrics.Header.class
net.sf.picard.metrics.MetricBase.class
net.sf.picard.metrics.MetricsFile.class
net.sf.picard.metrics.MultilevelMetrics.class
net.sf.picard.metrics.StringHeader.class
net.sf.picard.metrics.VersionHeader.class
net.sf.picard.reference.AbstractFastaSequenceFile.class
net.sf.picard.reference.ExtractSequences.class
net.sf.picard.reference.FastaSequenceFile.class
net.sf.picard.reference.FastaSequenceIndex.class
net.sf.picard.reference.FastaSequenceIndexEntry.class
net.sf.picard.reference.IndexedFastaSequenceFile.class
net.sf.picard.reference.NormalizeFasta.class
net.sf.picard.reference.ReferenceSequence.class
net.sf.picard.reference.ReferenceSequenceFile.class
net.sf.picard.reference.ReferenceSequenceFileFactory.class
net.sf.picard.reference.ReferenceSequenceFileWalker.class
net.sf.picard.sam.AbstractAlignmentMerger.class
net.sf.picard.sam.AbstractDuplicateFindingAlgorithm.class
net.sf.picard.sam.AddOrReplaceReadGroups.class
net.sf.picard.sam.BamIndexStats.class
net.sf.picard.sam.BuildBamIndex.class
net.sf.picard.sam.CleanSam.class
net.sf.picard.sam.ComparableSamRecordIterator.class
net.sf.picard.sam.CompareSAMs.class
net.sf.picard.sam.CoordinateSortedPairInfoMap.class
net.sf.picard.sam.CreateSequenceDictionary.class
net.sf.picard.sam.DiskReadEndsMap.class
net.sf.picard.sam.DownsampleSam.class
net.sf.picard.sam.DuplicationMetrics.class
net.sf.picard.sam.EstimateLibraryComplexity.class
net.sf.picard.sam.FastqToSam.class
net.sf.picard.sam.FixMateInformation.class
net.sf.picard.sam.MarkDuplicates.class
net.sf.picard.sam.MergeBamAlignment.class
net.sf.picard.sam.MergeSamFiles.class
net.sf.picard.sam.MergingSamRecordIterator.class
net.sf.picard.sam.MultiHitAlignedReadIterator.class
net.sf.picard.sam.RAMReadEndsMap.class
net.sf.picard.sam.ReadEnds.class
net.sf.picard.sam.ReadEndsCodec.class
net.sf.picard.sam.ReadEndsMap.class
net.sf.picard.sam.ReorderSam.class
net.sf.picard.sam.ReplaceSamHeader.class
net.sf.picard.sam.ReservedTagConstants.class
net.sf.picard.sam.RevertSam.class
net.sf.picard.sam.SamAlignmentMerger.class
net.sf.picard.sam.SamFileHeaderMerger.class
net.sf.picard.sam.SamFileValidator.class
net.sf.picard.sam.SamFormatConverter.class
net.sf.picard.sam.SamPairUtil.class
net.sf.picard.sam.SamToFastq.class
net.sf.picard.sam.SortSam.class
net.sf.picard.sam.ValidateSamFile.class
net.sf.picard.sam.ViewSam.class
net.sf.picard.util.AbstractInputParser.class
net.sf.picard.util.AbstractIterator.class
net.sf.picard.util.BasicInputParser.class
net.sf.picard.util.CigarUtil.class
net.sf.picard.util.ClippingUtility.class
net.sf.picard.util.CollectionUtil.class
net.sf.picard.util.FastqQualityFormat.class
net.sf.picard.util.FileAppendStreamLRUCache.class
net.sf.picard.util.FileChannelJDKBugWorkAround.class
net.sf.picard.util.FormatUtil.class
net.sf.picard.util.Histogram.class
net.sf.picard.util.IlluminaUtil.class
net.sf.picard.util.Interval.class
net.sf.picard.util.IntervalCoordinateComparator.class
net.sf.picard.util.IntervalList.class
net.sf.picard.util.IntervalListReferenceSequenceMask.class
net.sf.picard.util.IntervalListTools.class
net.sf.picard.util.IntervalTree.class
net.sf.picard.util.IntervalTreeMap.class
net.sf.picard.util.IntervalUtil.class
net.sf.picard.util.Locus.class
net.sf.picard.util.LocusComparator.class
net.sf.picard.util.LocusImpl.class
net.sf.picard.util.Log.class
net.sf.picard.util.MathUtil.class
net.sf.picard.util.MetricsDoclet.class
net.sf.picard.util.OverlapDetector.class
net.sf.picard.util.PeekableIterator.class
net.sf.picard.util.ProcessExecutor.class
net.sf.picard.util.QualityUtil.class
net.sf.picard.util.RExecutor.class
net.sf.picard.util.ReferenceSequenceMask.class
net.sf.picard.util.ResourceLimitedMap.class
net.sf.picard.util.ResourceLimitedMapFunctor.class
net.sf.picard.util.SamLocusIterator.class
net.sf.picard.util.SamRecordIntervalIterator.class
net.sf.picard.util.SamRecordIntervalIteratorFactory.class
net.sf.picard.util.SolexaQualityConverter.class
net.sf.picard.util.TabbedInputParser.class
net.sf.picard.util.TabbedTextFileWithHeaderParser.class
net.sf.picard.util.WholeGenomeReferenceSequenceMask.class
org.apache.tools.bzip2.BZip2Constants.class
org.apache.tools.bzip2.CBZip2InputStream.class
org.apache.tools.bzip2.CBZip2OutputStream.class
org.apache.tools.bzip2.CRC.class








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