Download proteomecommons.org-io-1.0.jar
proteomecommons/proteomecommons.org-io-1.0.jar.zip( 269 k)
The download jar file contains the following class files or Java source files.
META-INF/MANIFEST.MF
org.apache.tools.bzip2.BZip2Constants.class
org.apache.tools.bzip2.CBZip2InputStream.class
org.apache.tools.bzip2.CBZip2OutputStream.class
org.apache.tools.bzip2.CRC.class
org.proteomecommons.io.AnnotatedPeakList.class
org.proteomecommons.io.CompressedPeakListWriter.class
org.proteomecommons.io.GenericPeak.class
org.proteomecommons.io.GenericPeakList.class
org.proteomecommons.io.GenericPeakListReader.class
org.proteomecommons.io.GenericPeakListWriter.class
org.proteomecommons.io.GenericPeptideReader.class
org.proteomecommons.io.GenericProteinReader.class
org.proteomecommons.io.GenomicPeptideReader.class
org.proteomecommons.io.IncompatibleFormatException.class
org.proteomecommons.io.IntermediateFilePeakListReader.class
org.proteomecommons.io.InvalidFileFormatException.class
org.proteomecommons.io.MissedCleavePeptideReader.class
org.proteomecommons.io.NonspecificPeptideReader.class
org.proteomecommons.io.OnlyTandemPeakListWriter.class
org.proteomecommons.io.Peak.class
org.proteomecommons.io.PeakList.class
org.proteomecommons.io.PeakListReader.class
org.proteomecommons.io.PeakListReaderFactory.class
org.proteomecommons.io.PeakListWriter.class
org.proteomecommons.io.PeakListWriterFactory.class
org.proteomecommons.io.PeptideAsProteinReader.class
org.proteomecommons.io.PeptideReader.class
org.proteomecommons.io.PotentialModificationPeptideReader.class
org.proteomecommons.io.ProteinReader.class
org.proteomecommons.io.RandomPeptideGenerator.class
org.proteomecommons.io.ReversedProteinReader.class
org.proteomecommons.io.ShuffledProteinReader.class
org.proteomecommons.io.SingleNucleotidePolymorphismPeptideReader.class
org.proteomecommons.io.SinglePeptideReader.class
org.proteomecommons.io.TrypticPeptideReader.class
org.proteomecommons.io.UnknownFileFormatException.class
org.proteomecommons.io.baf.BAFPeakListReaderFactory.class
org.proteomecommons.io.bruker.CantLocateCompassXportExecutableException.class
org.proteomecommons.io.bruker.CompassXportFactory.class
org.proteomecommons.io.bruker.CompassXportPeakListReader.class
org.proteomecommons.io.bzip2.BZIP2PeakListReaderFactory.class
org.proteomecommons.io.bzip2.BZIP2PeakListWriter.class
org.proteomecommons.io.bzip2.BZIP2PeakListWriterFactory.class
org.proteomecommons.io.dataxml.Acquisition.class
org.proteomecommons.io.dataxml.AcquisitionList.class
org.proteomecommons.io.dataxml.Admin.class
org.proteomecommons.io.dataxml.Analyzer.class
org.proteomecommons.io.dataxml.BinaryDataArray.class
org.proteomecommons.io.dataxml.CV.class
org.proteomecommons.io.dataxml.CVList.class
org.proteomecommons.io.dataxml.CVParam.class
org.proteomecommons.io.dataxml.Component.class
org.proteomecommons.io.dataxml.Contact.class
org.proteomecommons.io.dataxml.DataGroup.class
org.proteomecommons.io.dataxml.DataGroupList.class
org.proteomecommons.io.dataxml.DataProcessing.class
org.proteomecommons.io.dataxml.DataProcessingList.class
org.proteomecommons.io.dataxml.DataXML.class
org.proteomecommons.io.dataxml.DataXmlPeakListReader.class
org.proteomecommons.io.dataxml.DataXmlPeakListReaderFactory.class
org.proteomecommons.io.dataxml.DataXmlPeakListWriter.class
org.proteomecommons.io.dataxml.DataXmlPeakListWriterFactory.class
org.proteomecommons.io.dataxml.DataXmlValidator.class
org.proteomecommons.io.dataxml.DelimitedBooleanArray.class
org.proteomecommons.io.dataxml.DelimitedDataArray.class
org.proteomecommons.io.dataxml.DelimitedDoubleArray.class
org.proteomecommons.io.dataxml.DelimitedFloatArray.class
org.proteomecommons.io.dataxml.DelimitedIntArray.class
org.proteomecommons.io.dataxml.DelimitedTimeArray.class
org.proteomecommons.io.dataxml.Detector.class
org.proteomecommons.io.dataxml.Experiment.class
org.proteomecommons.io.dataxml.ExperimentList.class
org.proteomecommons.io.dataxml.FileChecksum.class
org.proteomecommons.io.dataxml.Instrument.class
org.proteomecommons.io.dataxml.InstrumentList.class
org.proteomecommons.io.dataxml.InstrumentSetting.class
org.proteomecommons.io.dataxml.JAXPValidator.class
org.proteomecommons.io.dataxml.ObjectFactory.class
org.proteomecommons.io.dataxml.ParamGroup.class
org.proteomecommons.io.dataxml.ParamGroupList.class
org.proteomecommons.io.dataxml.ParamGroupRef.class
org.proteomecommons.io.dataxml.Precursor.class
org.proteomecommons.io.dataxml.PrecursorList.class
org.proteomecommons.io.dataxml.Sample.class
org.proteomecommons.io.dataxml.SampleList.class
org.proteomecommons.io.dataxml.SimpleSchema.class
org.proteomecommons.io.dataxml.Software.class
org.proteomecommons.io.dataxml.SoftwareList.class
org.proteomecommons.io.dataxml.Source.class
org.proteomecommons.io.dataxml.SourceFile.class
org.proteomecommons.io.dataxml.SourceFileList.class
org.proteomecommons.io.dataxml.Spectrum.class
org.proteomecommons.io.dataxml.SpectrumData.class
org.proteomecommons.io.dataxml.SpectrumHeader.class
org.proteomecommons.io.dataxml.SpectrumList.class
org.proteomecommons.io.dataxml.StringDataArray.class
org.proteomecommons.io.dataxml.UserParam.class
org.proteomecommons.io.dataxml.package-info.class
org.proteomecommons.io.decoy.DecoyAnalysisComparision.class
org.proteomecommons.io.decoy.DecoyDatabaseAnalysis.class
org.proteomecommons.io.decoy.FalsePositiveRatioAtScore.class
org.proteomecommons.io.decoy.GenericDecoyDatabaseAnalysis.class
org.proteomecommons.io.decoy.GenericScoredPeptide.class
org.proteomecommons.io.decoy.NamedCount.class
org.proteomecommons.io.decoy.ScoredPeptide.class
org.proteomecommons.io.dta.DTAPeak.class
org.proteomecommons.io.dta.SequestDTAPeakListReader.class
org.proteomecommons.io.dta.SequestDTAPeakListReaderFactory.class
org.proteomecommons.io.dta.SequestDTAPeakListWriter.class
org.proteomecommons.io.dta.SequestDTAPeakListWriterFactory.class
org.proteomecommons.io.fasta.FASTAProteinReader.class
org.proteomecommons.io.fid.FIDPeakListReaderFactory.class
org.proteomecommons.io.filter.AssignChargePeakListFilter.class
org.proteomecommons.io.filter.DeisotopeAndReduceMultichargePeakListFilter.class
org.proteomecommons.io.filter.DeisotopeCentroidedPeakListFilter.class
org.proteomecommons.io.filter.IntensityPeakListFilter.class
org.proteomecommons.io.filter.KeepOnlyBelowParentIon.class
org.proteomecommons.io.filter.MergeSamePeakListFilter.class
org.proteomecommons.io.filter.MinimalPeak.class
org.proteomecommons.io.filter.NormalizePeakListFilter.class
org.proteomecommons.io.filter.PeakIntensityComparator.class
org.proteomecommons.io.filter.PeakListFilter.class
org.proteomecommons.io.filter.RecalibratePeakListFilter.class
org.proteomecommons.io.filter.ReduceMemoryUsageFilter.class
org.proteomecommons.io.filter.ReduceMultichargePeakListFilter.class
org.proteomecommons.io.filter.RelativeIntensityPeakListFilter.class
org.proteomecommons.io.filter.RemoveIonsPeakListFilter.class
org.proteomecommons.io.filter.WindowIntensityFilter.class
org.proteomecommons.io.gpm.XTandemOutputPeakList.class
org.proteomecommons.io.gpm.XTandemOutputPeakListReader.class
org.proteomecommons.io.gpm.XTandemOutputPeakListReaderFactory.class
org.proteomecommons.io.gpmdb.GPMDBPeptide.class
org.proteomecommons.io.gpmdb.GPMDBPeptideReader.class
org.proteomecommons.io.gui.ConvertPeakListGUI.class
org.proteomecommons.io.gui.ConvertPeakListGUIPanel.class
org.proteomecommons.io.gui.ExitMenuItem.class
org.proteomecommons.io.gui.TranslucentPane.class
org.proteomecommons.io.gui.WhiteBox.class
org.proteomecommons.io.gzip.GZIPPeakListReaderFactory.class
org.proteomecommons.io.gzip.GZIPPeakListWriter.class
org.proteomecommons.io.gzip.GZIPPeakListWriterFactory.class
org.proteomecommons.io.lzma.LZMAPeakListReaderFactory.class
org.proteomecommons.io.lzma.LZMAPeakListWriter.class
org.proteomecommons.io.lzma.LZMAPeakListWriterFactory.class
org.proteomecommons.io.mgf.MascotGenericFormatMetaData.class
org.proteomecommons.io.mgf.MascotGenericFormatPeakList.class
org.proteomecommons.io.mgf.MascotGenericFormatPeakListReader.class
org.proteomecommons.io.mgf.MascotGenericFormatPeakListReaderFactory.class
org.proteomecommons.io.mgf.MascotGenericFormatPeakListWriter.class
org.proteomecommons.io.mgf.MascotGenericFormatPeakListWriterFactory.class
org.proteomecommons.io.msp.MSPPeakList.class
org.proteomecommons.io.msp.MSPPeakListReader.class
org.proteomecommons.io.msp.MSPPeakListReaderFactory.class
org.proteomecommons.io.mzdata.MzDataPeakListReader.class
org.proteomecommons.io.mzdata.MzDataPeakListWriterFactory.class
org.proteomecommons.io.mzdata.v1_04.MzDataPeakListReaderFactory.class
org.proteomecommons.io.mzdata.v1_05.MzDataPeakList.class
org.proteomecommons.io.mzdata.v1_05.MzDataPeakListPrecursorList.class
org.proteomecommons.io.mzdata.v1_05.MzDataPeakListPrecursorListItem.class
org.proteomecommons.io.mzdata.v1_05.MzDataPeakListReader.class
org.proteomecommons.io.mzdata.v1_05.MzDataPeakListReaderFactory.class
org.proteomecommons.io.mzdata.v1_05.MzDataPeakListSpectrumSettings.class
org.proteomecommons.io.mzdata.v1_05.MzDataPeakListWriter.class
org.proteomecommons.io.mzxml.Base64.class
org.proteomecommons.io.mzxml.MzXMLPeakListReader.class
org.proteomecommons.io.mzxml.MzXMLPeakListWriterFactory.class
org.proteomecommons.io.mzxml.v1_1_1.DataProcessing.class
org.proteomecommons.io.mzxml.v1_1_1.MsDetector.class
org.proteomecommons.io.mzxml.v1_1_1.MsInstrument.class
org.proteomecommons.io.mzxml.v1_1_1.MsIonisation.class
org.proteomecommons.io.mzxml.v1_1_1.MsManufacturer.class
org.proteomecommons.io.mzxml.v1_1_1.MsMassAnalyzer.class
org.proteomecommons.io.mzxml.v1_1_1.MsModel.class
org.proteomecommons.io.mzxml.v1_1_1.MsResolution.class
org.proteomecommons.io.mzxml.v1_1_1.MsRun.class
org.proteomecommons.io.mzxml.v1_1_1.MzXMLPeakList.class
org.proteomecommons.io.mzxml.v1_1_1.MzXMLPeakListReader.class
org.proteomecommons.io.mzxml.v1_1_1.MzXMLPeakListReaderFactory.class
org.proteomecommons.io.mzxml.v1_1_1.Operator.class
org.proteomecommons.io.mzxml.v1_1_1.ParentFile.class
org.proteomecommons.io.mzxml.v1_1_1.Separation.class
org.proteomecommons.io.mzxml.v1_1_1.Sha1.class
org.proteomecommons.io.mzxml.v1_1_1.Software.class
org.proteomecommons.io.mzxml.v1_1_1.Spotting.class
org.proteomecommons.io.mzxml.v2_0.DataProcessing.class
org.proteomecommons.io.mzxml.v2_0.MsDetector.class
org.proteomecommons.io.mzxml.v2_0.MsInstrument.class
org.proteomecommons.io.mzxml.v2_0.MsIonisation.class
org.proteomecommons.io.mzxml.v2_0.MsManufacturer.class
org.proteomecommons.io.mzxml.v2_0.MsMassAnalyzer.class
org.proteomecommons.io.mzxml.v2_0.MsModel.class
org.proteomecommons.io.mzxml.v2_0.MsResolution.class
org.proteomecommons.io.mzxml.v2_0.MsRun.class
org.proteomecommons.io.mzxml.v2_0.MzXMLPeakList.class
org.proteomecommons.io.mzxml.v2_0.MzXMLPeakListReader.class
org.proteomecommons.io.mzxml.v2_0.MzXMLPeakListReaderFactory.class
org.proteomecommons.io.mzxml.v2_0.Operator.class
org.proteomecommons.io.mzxml.v2_0.ParentFile.class
org.proteomecommons.io.mzxml.v2_0.Separation.class
org.proteomecommons.io.mzxml.v2_0.Sha1.class
org.proteomecommons.io.mzxml.v2_0.Software.class
org.proteomecommons.io.mzxml.v2_0.Spotting.class
org.proteomecommons.io.mzxml.v2_1.DataProcessing.class
org.proteomecommons.io.mzxml.v2_1.MsDetector.class
org.proteomecommons.io.mzxml.v2_1.MsInstrument.class
org.proteomecommons.io.mzxml.v2_1.MsIonisation.class
org.proteomecommons.io.mzxml.v2_1.MsManufacturer.class
org.proteomecommons.io.mzxml.v2_1.MsMassAnalyzer.class
org.proteomecommons.io.mzxml.v2_1.MsModel.class
org.proteomecommons.io.mzxml.v2_1.MsResolution.class
org.proteomecommons.io.mzxml.v2_1.MsRun.class
org.proteomecommons.io.mzxml.v2_1.MzXMLPeakList.class
org.proteomecommons.io.mzxml.v2_1.MzXMLPeakListReader.class
org.proteomecommons.io.mzxml.v2_1.MzXMLPeakListReaderFactory.class
org.proteomecommons.io.mzxml.v2_1.MzXMLPeakListWriter.class
org.proteomecommons.io.mzxml.v2_1.Operator.class
org.proteomecommons.io.mzxml.v2_1.ParentFile.class
org.proteomecommons.io.mzxml.v2_1.Separation.class
org.proteomecommons.io.mzxml.v2_1.Sha1.class
org.proteomecommons.io.mzxml.v2_1.Software.class
org.proteomecommons.io.mzxml.v2_1.Spotting.class
org.proteomecommons.io.pkl.MicromassPKLPeakListReader.class
org.proteomecommons.io.pkl.MicromassPKLPeakListReaderFactory.class
org.proteomecommons.io.pkl.MicromassPKLPeakListWriter.class
org.proteomecommons.io.pkl.MicromassPKLPeakListWriterFactory.class
org.proteomecommons.io.raw.CantLocateReAdWExecutableException.class
org.proteomecommons.io.raw.RawPeak.class
org.proteomecommons.io.raw.RawReader.class
org.proteomecommons.io.raw.RawReaderFactory.class
org.proteomecommons.io.raw.RawViaReadwFactory.class
org.proteomecommons.io.raw.RawViaReadwPeakListReader.class
org.proteomecommons.io.txt.PlainTextNotepadFriendlyPeakListWriterFactory.class
org.proteomecommons.io.txt.PlainTextPeakListReader.class
org.proteomecommons.io.txt.PlainTextPeakListReaderFactory.class
org.proteomecommons.io.txt.PlainTextPeakListWriter.class
org.proteomecommons.io.txt.PlainTextPeakListWriterFactory.class
org.proteomecommons.io.util.ConvertPeakList.class
org.proteomecommons.io.util.ConvertPeakListConversion.class
org.proteomecommons.io.util.ConvertPeakListGUI.class
org.proteomecommons.io.util.DecoyDatabaseMaker.class
org.proteomecommons.io.util.DeleteFilesPeakListReaderFactoryWrapper.class
org.proteomecommons.io.util.DeleteFilesPeakListReaderWrapper.class
org.proteomecommons.io.util.Help.class
org.proteomecommons.io.util.PeakIntensityComparator.class
org.proteomecommons.io.util.PeakMassOverChargeComparator.class
org.proteomecommons.io.util.PeakMatcher.class
org.proteomecommons.io.util.PotentialModificationFinder.class
org.proteomecommons.io.util.PrintPeakList.class
org.proteomecommons.io.util.ProteinSetStatistics.class
org.proteomecommons.io.util.StepOptionPanel.class
org.proteomecommons.io.util.StepPanel.class
org.proteomecommons.io.wiff.AnalystQSWIFFToCSVPeakListReader.class
org.proteomecommons.io.wiff.AnalystQSWIFFToCSVPeakListReaderFactory.class
org.proteomecommons.io.wiff.WiffViaWiffToDtaFactory.class
org.proteomecommons.io.wiff.WiffViaWiffToDtaPeakListReader.class
org.proteomecommons.io.xml.GenericXMLPeakListReaderFactory.class
org.proteomecommons.io.xml.XMLPeakListReaderFactory.class
org.proteomecommons.io.yep.YEPPeakListReaderFactory.class
org.proteomecommons.io.zip.ZipPeakListReaderFactory.class
org.proteomecommons.io.zip.ZipPeakListWriter.class
org.proteomecommons.io.zip.ZipPeakListWriterFactory.class
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