Fragmentation

All the fragments of the selected glycan structure can be computed by clicking in the menubar or in the popup menu on "Tool -> Fragments -> Compute fragments for all structures". The fragment settings dialog will open. In the dialog there is the possibility of chosing which type of fragments are computed and how many cleavages are applied to the structure. After having pressed OK in the fragment settings dialog, the fragment panel will appear in the right part of the window. On the top of the panel it is displayed the structure for which the fragments have been computed. The rest of the panel is occupied by the fragments table. For each row of the fragment table there are three columns: the fragment structure, the type of the fragment and the mass of the fragment.