Android Open Source - DIYgenomics_Android Category Item Activity

From Project

Back to project page DIYgenomics_Android.
License

The source code is released under:
/** * Copyright (C) 2010 DIYgenomics diygenomics.org * Copyright (C) 2010 Melanie Swan mxswan@gmail * Copyright (C) 2010 Michael Kolb * Copyright (C) 2010 Lawrence S. Wong * All rights reserved. * * M...
If you think the Android project DIYgenomics_Android listed in this page is inappropriate, such as containing malicious code/tools or violating the copyright, please email info at java2s dot com, thanks.
Java Source Code

package org.diygenomics.pg;
/*from  www. j  a v a  2  s .  co m*/
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Collections;

import org.diygenomics.pg.utils.ConditionVariantTableRowComparator;
import org.diygenomics.pg.utils.Flurry;

import android.app.Activity;
import android.content.Intent;
import android.os.Bundle;
import android.view.LayoutInflater;
import android.view.View;
import android.view.View.OnClickListener;
import android.view.ViewGroup;
import android.widget.AdapterView;
import android.widget.AdapterView.OnItemClickListener;
import android.widget.BaseAdapter;
import android.widget.ListView;
import android.widget.ProgressBar;
import android.widget.TextView;

import com.flurry.android.FlurryAgent;

public class CategoryItemActivity extends Activity
  implements OnClickListener {

  public static final String EXTRA_ROW = "rowData";

  String mCategoryItem;
  ArrayList<MappingItem> tableData;

  View mMainView;
  Data mData;

  @Override
  public void onCreate(Bundle bundle) {
    super.onCreate(bundle);
    mData = Main.getData();
    mCategoryItem = getIntent().getStringExtra(CategoriesActivity.EXTRA_ITEM);
    tableData = mData.getCategoryItemVariantTable(mCategoryItem);
    Collections.sort(tableData, new ConditionVariantTableRowComparator());
    mMainView = getLayoutInflater().inflate(R.layout.category_items, null);
    TextView title = (TextView) mMainView
        .findViewById(R.id.title);
    ListView list = (ListView) mMainView.findViewById(R.id.list);
    list.setAdapter(new CVTRAdapter());
    title.setText(mCategoryItem);
    DotUtils.populateCompanyNames(mMainView, mData);
    View info = mMainView.findViewById(R.id.info);
    info.setOnClickListener(this);
    FlurryAgent.onEvent(Flurry.EVENT_CATITEM, Flurry.map("item", mCategoryItem));
    setContentView(mMainView);

    list.setOnItemClickListener(new OnItemClickListener() {

      @Override
      public void onItemClick(AdapterView<?> arg0, View arg1, int pos,
          long arg3) {

        MappingItem row = tableData.get(pos);
        Intent intent = new Intent();
        intent.putExtra(EXTRA_ROW, (Serializable) row);
        intent.putExtra(CategoriesActivity.EXTRA_ITEM, mCategoryItem);
        intent.setClassName(StudiesActivity.class.getPackage()
            .getName(), StudiesActivity.class.getName());
        startActivity(intent);

      }
    });

  }
  
  @Override
  public void onClick(View arg0) {
    InfoHandler.getInstance().showInfo(this, R.string.info_catitem);
  }

  class CVTRAdapter extends BaseAdapter {

    @Override
    public int getCount() {
      return tableData.size();
    }

    @Override
    public Object getItem(int position) {
      return tableData.get(position);
    }

    @Override
    public long getItemId(int position) {
      return position + 1;
    }

    @Override
    public View getView(int position, View convertView, ViewGroup parent) {
      if (convertView == null) {
        convertView = LayoutInflater.from(CategoryItemActivity.this)
            .inflate(R.layout.category_item, null);
      }
      if (position % 2 == 0) {
        convertView
            .setBackgroundResource(R.drawable.list_selector_background);
      } else {
        convertView
            .setBackgroundResource(R.drawable.list_selector_background2);
      }
      MappingItem row = tableData.get(position);

      TextView rs = (TextView) convertView.findViewById(R.id.rsid);
      rs.setText(row.getVariant().RSID);
      // rs.setText( padRight( row.variant.RSID, 11) );
      TextView locus = (TextView) convertView
          .findViewById(R.id.locus);
      locus.setText(row.getVariant().getLocus());
      // locus.setText( padRight( row.variant.locus, 11) );
      TextView gene = (TextView) convertView.findViewById(R.id.gene);
      gene.setText(row.getVariant().gene);
      TextView normal = (TextView) convertView.findViewById(R.id.normal);
      String ngenotype = row.getVariant().genotype;
      if (ngenotype != null) {
        normal.setText(ngenotype);
        TextView mine2 = (TextView) convertView.findViewById(R.id.mine2);
        TextView mine1 = (TextView) convertView.findViewById(R.id.mine1);
        if (mData.getGenotype() != null) {
          Genome g = mData.getGenotype().get(row.getVariant().RSID);
          if (g != null) {
            String mine = g.genotype;
            if (mine.length() > 0) {
              String letter = mine.substring(0,1);
              mine1.setText(letter);
              if (letter.equals(ngenotype)) {
                mine1.setTextColor(getResources().getColor(R.color.normal));
              } else {
                mine1.setTextColor(getResources().getColor(R.color.mutated));
              }
              if (mine.length() > 1) {
                letter = mine.substring(1,2);
                mine2.setText(letter);
                if (letter.equals(ngenotype)) {
                  mine2.setTextColor(getResources().getColor(R.color.normal));
                } else {
                  mine2.setTextColor(getResources().getColor(R.color.mutated));
                }
              } else {
                mine2.setText("");
              }
            } else {
              mine1.setText("");
              mine2.setText("");
            }
          } else {
            mine1.setText("");
            mine2.setText("");
          }
        } else {
          mine1.setText("");
          mine2.setText("");
        }
      } else {
        normal.setText("");
      }
      DotUtils.populateDotViews(convertView, row, null, mData);
      ProgressBar rank = (ProgressBar) convertView.findViewById(R.id.rank);
      rank.setProgress(row.getVariant().rank);
      return convertView;
    }

  }// class CVTRAdapter

}
Java Source Code List
