DebugElement.java :  » Science » Chemistry-Development-Kit-1.3.5 » org » openscience » cdk » debug » Java Open Source

/* $Revision$ $Author$ $Date$
 *
 * Copyright (C) 2005-2007  Egon Willighagen <egonw@users.sf.net>
 *
 * Contact: cdk-devel@lists.sourceforge.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation; either version 2.1
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
 */
package org.openscience.cdk.debug;

import java.util.Map;

import org.openscience.cdk.Element;
import org.openscience.cdk.interfaces.IChemObjectChangeEvent;
import org.openscience.cdk.interfaces.IChemObjectListener;
import org.openscience.cdk.interfaces.IElement;
import org.openscience.cdk.interfaces.IChemObjectBuilder;
import org.openscience.cdk.tools.ILoggingTool;
import org.openscience.cdk.tools.LoggingToolFactory;

/**
 * Debugging data class.
 * 
 * @author     egonw
 * @cdk.module datadebug
 * @cdk.githash
 */
public class DebugElement extends Element
    implements IElement {

    private static final long serialVersionUID = -8520499563841667066L;
    
    ILoggingTool logger =
        LoggingToolFactory.createLoggingTool(DebugElement.class);

  public DebugElement() {
    super();
    logger.debug("Instantiated a DebugElement");
  }
  
  public DebugElement(String symbol) {
    super(symbol);
    logger.debug("Instantiated a DebugElement: symbol= ", symbol);
  }
  
  public DebugElement(String symbol, int atomicNumber) {
    super(symbol, atomicNumber);
    logger.debug("Instantiated a DebugElement: symbol= ", symbol + " atomic number= " + atomicNumber);
  }
  
  public DebugElement(IElement element) {
    super(element);
    logger.debug("Instantiated a DebugElement: element= ", element);
  }

  public Integer getAtomicNumber() {
    logger.debug("Getting atomic number: ", super.getAtomicNumber());
    return super.getAtomicNumber();
  }

  public void setAtomicNumber(Integer atomicNumber) {
    logger.debug("Setting atomic number: ", atomicNumber);
    super.setAtomicNumber(atomicNumber);
  }

  public String getSymbol() {
    logger.debug("Getting symbol: ", super.getSymbol());
    return super.getSymbol();
  }

  public void setSymbol(String symbol) {
    logger.debug("Setting symbol: ", symbol);
    super.setSymbol(symbol);
  }

  public void addListener(IChemObjectListener col) {
    logger.debug("Adding listener: ", col);
    super.addListener(col);
  }

  public int getListenerCount() {
    logger.debug("Getting listener count: ", super.getListenerCount());
    return super.getListenerCount();
  }

  public void removeListener(IChemObjectListener col) {
    logger.debug("Removing listener: ", col);
    super.removeListener(col);
  }

  public void notifyChanged() {
    logger.debug("Notifying changed");
    super.notifyChanged();
  }

  public void notifyChanged(IChemObjectChangeEvent evt) {
    logger.debug("Notifying changed event: ", evt);
    super.notifyChanged(evt);
  }

  public void setProperty(Object description, Object property) {
    logger.debug("Setting property: ", description + "=" + property);
    super.setProperty(description, property);
  }

  public void removeProperty(Object description) {
    logger.debug("Removing property: ", description);
    super.removeProperty(description);
  }

  public Object getProperty(Object description) {
    logger.debug("Getting property: ", description + "=" + super.getProperty(description));
    return super.getProperty(description);
  }

  public Map<Object,Object> getProperties() {
    logger.debug("Getting properties");
    return super.getProperties();
  }

  public String getID() {
    logger.debug("Getting ID: ", super.getID());
    return super.getID();
  }

  public void setID(String identifier) {
    logger.debug("Setting ID: ", identifier);
    super.setID(identifier);
  }

  public void setFlag(int flag_type, boolean flag_value) {
    logger.debug("Setting flag: ", flag_type + "=" + flag_value);
    super.setFlag(flag_type, flag_value);
  }

  public boolean getFlag(int flag_type) {
    logger.debug("Setting flag: ", flag_type + "=" + super.getFlag(flag_type));
    return super.getFlag(flag_type);
  }

  public void setProperties(Map<Object,Object> properties) {
    logger.debug("Setting properties: ", properties);
    super.setProperties(properties);
  }

  public void setFlags(boolean[] flagsNew) {
    logger.debug("Setting flags:", flagsNew.length);
    super.setFlags(flagsNew);
  }

  public boolean[] getFlags() {
    logger.debug("Getting flags:", super.getFlags().length);
    return super.getFlags();
  }

  public Object clone() throws CloneNotSupportedException {
        Object clone = null;
        try {
          clone = super.clone();
        } catch (Exception exception) {
          logger.error("Could not clone DebugAtom: " + exception.getMessage(), exception);
          logger.debug(exception);
        }
        return clone;
  }

    public IChemObjectBuilder getBuilder() {
        return DebugChemObjectBuilder.getInstance();
    }

}