Subset0Alignment.java :  » Search » isplice-undergrad-research » Model » alignments » Java Open Source

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isplice undergrad research » Model » alignments » Subset0Alignment.java
package Model.alignments;

import java.util.List;

import Model.ValidPosition;

public interface Subset0Alignment extends Alignment {

  List<ValidPosition> getValidPositions();

  ValidPosition getMaxBound();

  int getAlignmentSize();

  String getCigarString();

  void setCigarString(String cigar);

}
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