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java.lang.Objectorg.vectorbase.gdav.beans.Model
public class Model
Model Javabean
DBConnection
Constructor Summary | |
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Model()
empty constructor |
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Model(int newID,
java.lang.String newName,
java.lang.String newSpp,
java.lang.String newDesc)
pass basic-info constructor |
Method Summary | |
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void |
addAlignment(Alignment alignment)
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void |
addAnnotationTable(AnnotationTable annotationTable)
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java.util.List |
getAlignments()
returns ArrayList of Alignment objects |
java.util.List |
getAnnotationTables()
returns ArrayList of AnnotationTable objects |
java.lang.String |
getDescription()
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java.lang.String |
getFormatSeq()
returns seq formatted for ease of reading (10-base blocks, forced newline after 70bp) |
int |
getModelID()
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java.lang.String |
getModelName()
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java.lang.String |
getSeq()
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java.lang.String |
getSpp()
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void |
setDescription(java.lang.String newID)
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void |
setModelID(int newID)
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void |
setModelName(java.lang.String newName)
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void |
setSeq(java.lang.String newID)
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void |
setSpp(java.lang.String newID)
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public Model()
public Model(int newID, java.lang.String newName, java.lang.String newSpp, java.lang.String newDesc)
Method Detail |
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public void setModelID(int newID)
public int getModelID()
public void setModelName(java.lang.String newName)
public java.lang.String getModelName()
public void setSpp(java.lang.String newID)
public java.lang.String getSpp()
public java.util.List getAnnotationTables()
AnnotationTable
objects
public void addAnnotationTable(AnnotationTable annotationTable)
public java.util.List getAlignments()
Alignment
objects
public void addAlignment(Alignment alignment)
public void setDescription(java.lang.String newID)
public java.lang.String getDescription()
public void setSeq(java.lang.String newID)
public java.lang.String getSeq()
public java.lang.String getFormatSeq() throws java.lang.Exception
java.lang.Exception
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