|
Ensembl Model v1.09 |
|||||||||
PREV NEXT | FRAMES NO FRAMES |
Uses of ObjectType in uk.ac.roslin.ensembl.config |
---|
Classes in uk.ac.roslin.ensembl.config that implement ObjectType | |
---|---|
class |
EnsemblComparaDivision
In 'ensembl.org' there is a single 'ensembl_compara' database which contains the pairwise comparison data on all the species in 'ensembl.org. |
class |
EnsemblCoordSystemType
|
class |
EnsemblCoreObjectType
|
class |
EnsemblDBType
Concrete implementation of DatabaseType interface for representing static Ensembl DatabaseTypes. |
class |
EnsemblType
|
class |
FeatureType
|
Uses of ObjectType in uk.ac.roslin.ensembl.model |
---|
Methods in uk.ac.roslin.ensembl.model that return ObjectType | |
---|---|
ObjectType |
Mapping.getSourceType()
|
ObjectType |
Mapping.getTargetType()
|
ObjectType |
IdentifiableObject.getType()
|
Methods in uk.ac.roslin.ensembl.model with parameters of type ObjectType | |
---|---|
MappingSet |
MappableObject.getMappings(ObjectType targetType)
|
Uses of ObjectType in uk.ac.roslin.ensembl.model.compara |
---|
Classes in uk.ac.roslin.ensembl.model.compara that implement ObjectType | |
---|---|
class |
HomologyType
|
Uses of ObjectType in uk.ac.roslin.ensembl.model.core |
---|
Subinterfaces of ObjectType in uk.ac.roslin.ensembl.model.core | |
---|---|
interface |
CoordSystemType
|
interface |
CoreObjectType
|
Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type ObjectType | |
---|---|
HashMap<ObjectType,CoordinateSet> |
DNASequence.getMappedRegions()
|
HashMap<ObjectType,? extends MappingSet> |
DNASequence.getObjectTypeMappings()
|
Methods in uk.ac.roslin.ensembl.model.core with parameters of type ObjectType | |
---|---|
void |
Feature.addMappedObjectType(ObjectType mappedType)
|
Boolean |
Feature.isObjectTypeMapped(ObjectType mappedType)
|
Uses of ObjectType in uk.ac.roslin.ensembl.model.database |
---|
Subinterfaces of ObjectType in uk.ac.roslin.ensembl.model.database | |
---|---|
interface |
DatabaseType
Interface for representing static DatabaseTypes |
Methods in uk.ac.roslin.ensembl.model.database that return types with arguments of type ObjectType | |
---|---|
List<? extends ObjectType> |
SingleSpeciesCoreDatabase.getFeaturesForCS(CoordinateSystem coordSys)
|
List<? extends ObjectType> |
CollectionCoreDatabase.getFeaturesForCS(Species sp,
CoordinateSystem coordSys)
|
Methods in uk.ac.roslin.ensembl.model.database with parameters of type ObjectType | |
---|---|
Set<? extends CoordinateSystem> |
SingleSpeciesCoreDatabase.getCSForFeature(ObjectType featureType)
|
Set<? extends CoordinateSystem> |
CollectionCoreDatabase.getCSForFeature(Species sp,
ObjectType feature)
|
Integer |
SingleSpeciesCoreDatabase.getMaxLengthForFeature(ObjectType featureType,
CoordinateSystem cs)
|
Integer |
CollectionCoreDatabase.getMaxLengthForFeature(Species sp,
ObjectType feature,
CoordinateSystem cs)
|
Uses of ObjectType in uk.ac.roslin.ensembl.model.relationship |
---|
Classes in uk.ac.roslin.ensembl.model.relationship that implement ObjectType | |
---|---|
class |
RelationshipType
|
|
Ensembl Model v1.09 |
|||||||||
PREV NEXT | FRAMES NO FRAMES |