001 /** 002 * Copyright (C) 2010 The Roslin Institute <contact andy.law@roslin.ed.ac.uk> 003 * 004 * This file is part of the Ensembl Java API demonstration project developed by the 005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of 006 * Veterinary Studies, University of Edinburgh. 007 * 008 * This is free software: you can redistribute it and/or modify 009 * it under the terms of the GNU General Public License (version 3) as published by 010 * the Free Software Foundation. 011 * 012 * This software is distributed in the hope that it will be useful, 013 * but WITHOUT ANY WARRANTY; without even the implied warranty of 014 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 015 * GNU General Public License for more details. 016 * 017 * You should have received a copy of the GNU General Public License 018 * in this software distribution. If not, see <http://www.gnu.org/licenses/gpl-3.0.html/>. 019 */ 020 021 package uk.ac.roslin.ensembl.dao.factory; 022 023 import uk.ac.roslin.ensembl.config.EnsemblComparaDivision; 024 import uk.ac.roslin.ensembl.dao.coreaccess.ChromosomeDAO; 025 import uk.ac.roslin.ensembl.dao.coreaccess.GeneDAO; 026 import uk.ac.roslin.ensembl.dao.coreaccess.ProteinFeatureDAO; 027 import uk.ac.roslin.ensembl.dao.coreaccess.AssemblyDAO; 028 import uk.ac.roslin.ensembl.dao.coreaccess.CoordinateSystemDAO; 029 import uk.ac.roslin.ensembl.dao.coreaccess.DNASequenceDAO; 030 import uk.ac.roslin.ensembl.dao.coreaccess.ExonDAO; 031 import uk.ac.roslin.ensembl.dao.coreaccess.TranscriptDAO; 032 import uk.ac.roslin.ensembl.dao.coreaccess.TranslationDAO; 033 import uk.ac.roslin.ensembl.exception.DAOException; 034 035 public interface DAOCoreFactory extends DAOFactory { 036 037 public GeneDAO getGeneDAO() throws DAOException; 038 public ProteinFeatureDAO getProteinFeatureDAO() throws DAOException; 039 public ChromosomeDAO getChromosomeDAO() throws DAOException; 040 public CoordinateSystemDAO getCoordinateSystemDAO() throws DAOException; 041 public AssemblyDAO getAssemblyDAO() throws DAOException; 042 public DNASequenceDAO getSequenceDAO() throws DAOException; 043 public TranslationDAO getTranslationDAO() throws DAOException; 044 public TranscriptDAO getTranscriptDAO() throws DAOException; 045 public ExonDAO getExonDAO() throws DAOException; 046 public DAOComparaFactory getComparaFactory(EnsemblComparaDivision comparaDivision); 047 048 049 050 }