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Ensembl Model v1.09 |
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Packages that use Coordinate | |
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uk.ac.roslin.ensembl.model | |
uk.ac.roslin.ensembl.model.compara | |
uk.ac.roslin.ensembl.model.core |
Uses of Coordinate in uk.ac.roslin.ensembl.model |
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Fields in uk.ac.roslin.ensembl.model declared as Coordinate | |
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protected Coordinate |
Mapping.sourceCoordinates
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protected Coordinate |
Mapping.targetCoordinates
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Methods in uk.ac.roslin.ensembl.model that return Coordinate | |
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Coordinate |
MappingSet.getExtent()
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Coordinate |
Coordinate.getOverlap(Coordinate test)
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Coordinate |
CoordinateSet.getRange()
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Coordinate |
Mapping.getSourceCoordinates()
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Coordinate |
Mapping.getTargetCoordinates()
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Methods in uk.ac.roslin.ensembl.model with parameters of type Coordinate | |
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int |
Coordinate.compareTo(Coordinate o)
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Boolean |
CoordinateSet.containsCoordinateWithoutGaps(Coordinate test)
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Coordinate |
Coordinate.getOverlap(Coordinate test)
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CoordinateSet |
CoordinateSet.getUncoveredRegions(Coordinate test)
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Boolean |
Coordinate.liesWithinCoordinate(Coordinate test)
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Boolean |
Coordinate.overlaps(Coordinate test)
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void |
Mapping.setSourceCoordinates(Coordinate coord)
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void |
Mapping.setTargetCoordinates(Coordinate coord)
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Uses of Coordinate in uk.ac.roslin.ensembl.model.compara |
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Methods in uk.ac.roslin.ensembl.model.compara that return Coordinate | |
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Coordinate |
HomologyAlignmentProperties.getCoords()
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Methods in uk.ac.roslin.ensembl.model.compara with parameters of type Coordinate | |
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void |
HomologyAlignmentProperties.setCoords(Coordinate coords)
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Uses of Coordinate in uk.ac.roslin.ensembl.model.core |
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Methods in uk.ac.roslin.ensembl.model.core with parameters of type Coordinate | |
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List<? extends Gene> |
DNASequence.getGenesOnRegion(Coordinate coord)
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HashMap<? extends DNASequence,? extends MappingSet> |
Chromosome.getRegionsOfConservedSynteny(Coordinate range,
Species target)
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Ensembl Model v1.09 |
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