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Ensembl Model v1.09 |
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Packages that use HomologyType | |
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uk.ac.roslin.ensembl.model.compara |
Uses of HomologyType in uk.ac.roslin.ensembl.model.compara |
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Fields in uk.ac.roslin.ensembl.model.compara declared as HomologyType | |
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static HomologyType |
HomologyType.APPARENT_ORTHOLOG_ONE2ONE
two homologous objects derived by speciation Ensembl pipeline annotates as apparent_ortholog_one2one see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.BETWEEN_SPECIES_PARALOG
two homologous objects derived by duplication Ensembl pipeline annotates as between_species_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.CONTIGUOUS_GENE_SPLIT
two homologous objects derived by duplication Ensembl pipeline annotates as contiguous_gene_split see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.ORTHOLOG_MANY2MANY
two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_many2many see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.ORTHOLOG_ONE2MANY
two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_one2many see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.ORTHOLOG_ONE2ONE
two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_one2one see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.OTHER_PARALOG
two homologous objects derived by duplication Ensembl pipeline annotates as other_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.POSSIBLE_ORTHOLOG
two homologous objects derived by speciation Ensembl pipeline annotates as possible_ortholog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.PUTATIVE_GENE_SPLIT
two homologous objects derived by duplication Ensembl pipeline annotates as putative_gene_split see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
HomologyType.WITHIN_SPECIES_PARALOG
two homologous objects derived by duplication Ensembl pipeline annotates as within_species_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
Methods in uk.ac.roslin.ensembl.model.compara that return HomologyType | |
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static HomologyType |
HomologyType.getHomologyTypeByName(String typeName)
Checks to see if the supplied type is the name of a valid HomologyType and returns the corresponding HomologyType object if it is. |
HomologyType |
HomologyRelationship.getRelationshipType()
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static HomologyType |
HomologyType.getRelationshipType(String value)
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Methods in uk.ac.roslin.ensembl.model.compara that return types with arguments of type HomologyType | |
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static Collection<HomologyType> |
HomologyType.getAllTypes()
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Ensembl Model v1.09 |
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