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Ensembl Model v1.09 |
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Packages that use CoordinateSystem | |
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uk.ac.roslin.ensembl.model | |
uk.ac.roslin.ensembl.model.core | |
uk.ac.roslin.ensembl.model.database |
Uses of CoordinateSystem in uk.ac.roslin.ensembl.model |
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Fields in uk.ac.roslin.ensembl.model declared as CoordinateSystem | |
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protected CoordinateSystem |
Mapping.sourceCoordSystem
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protected CoordinateSystem |
Mapping.targetCoordSystem
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Uses of CoordinateSystem in uk.ac.roslin.ensembl.model.core |
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Methods in uk.ac.roslin.ensembl.model.core that return CoordinateSystem | |
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CoordinateSystem |
DNASequence.getCoordSystem()
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Methods in uk.ac.roslin.ensembl.model.core with parameters of type CoordinateSystem | |
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void |
DNASequence.setCoordSystem(CoordinateSystem coordSystem)
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Uses of CoordinateSystem in uk.ac.roslin.ensembl.model.database |
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Methods in uk.ac.roslin.ensembl.model.database that return CoordinateSystem | |
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CoordinateSystem |
CollectionCoreDatabase.getBuildCoordSystem(Species species,
String featureType)
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CoordinateSystem |
SingleSpeciesCoreDatabase.getBuildCoordSystem(String featureType)
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CoordinateSystem |
SingleSpeciesCoreDatabase.getChromosomeLevelCoordSystem()
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CoordinateSystem |
CollectionCoreDatabase.getChromosomeLevelCS(Species species)
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CoordinateSystem |
SingleSpeciesCoreDatabase.getCSByID(Integer id)
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CoordinateSystem |
CollectionCoreDatabase.getCSByID(Species species,
Integer id)
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CoordinateSystem |
SingleSpeciesCoreDatabase.getSequenceLevelCoordSystem()
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CoordinateSystem |
CollectionCoreDatabase.getSequenceLevelCS(Species species)
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CoordinateSystem |
SingleSpeciesCoreDatabase.getTopLevelCoordSystem()
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CoordinateSystem |
CollectionCoreDatabase.getTopLevelCS(Species species)
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Methods in uk.ac.roslin.ensembl.model.database that return types with arguments of type CoordinateSystem | |
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Set<? extends CoordinateSystem> |
SingleSpeciesCoreDatabase.getCSForFeature(ObjectType featureType)
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Set<? extends CoordinateSystem> |
CollectionCoreDatabase.getCSForFeature(Species sp,
ObjectType feature)
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Methods in uk.ac.roslin.ensembl.model.database with parameters of type CoordinateSystem | |
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List<? extends ObjectType> |
SingleSpeciesCoreDatabase.getFeaturesForCS(CoordinateSystem coordSys)
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List<? extends ObjectType> |
CollectionCoreDatabase.getFeaturesForCS(Species sp,
CoordinateSystem coordSys)
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Integer |
SingleSpeciesCoreDatabase.getMaxLengthForFeature(ObjectType featureType,
CoordinateSystem cs)
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Integer |
CollectionCoreDatabase.getMaxLengthForFeature(Species sp,
ObjectType feature,
CoordinateSystem cs)
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Ensembl Model v1.09 |
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