001 /** 002 * Copyright (C) 2010 The Roslin Institute <contact andy.law@roslin.ed.ac.uk> 003 * 004 * This file is part of the Ensembl Java API demonstration project developed by the 005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of 006 * Veterinary Studies, University of Edinburgh. 007 * 008 * This is free software: you can redistribute it and/or modify 009 * it under the terms of the GNU General Public License (version 3) as published by 010 * the Free Software Foundation. 011 * 012 * This software is distributed in the hope that it will be useful, 013 * but WITHOUT ANY WARRANTY; without even the implied warranty of 014 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 015 * GNU General Public License for more details. 016 * 017 * You should have received a copy of the GNU General Public License 018 * in this software distribution. If not, see <http://www.gnu.org/licenses/gpl-3.0.html/>. 019 */ 020 021 package uk.ac.roslin.ensembl.dao.database.factory; 022 023 import uk.ac.roslin.ensembl.dao.database.DBSpecies; 024 import uk.ac.roslin.ensembl.dao.factory.DAOSpeciesFactory; 025 import uk.ac.roslin.ensembl.exception.DAOException; 026 import uk.ac.roslin.ensembl.model.core.CollectionSpecies; 027 import uk.ac.roslin.ensembl.model.core.Species; 028 import uk.ac.roslin.ensembl.model.database.CollectionDatabase; 029 import uk.ac.roslin.ensembl.model.database.SingleSpeciesDatabase; 030 031 /** 032 * 033 * @author tpaterso 034 */ 035 public abstract class DBDAOSpeciesFactory extends DBDAOFactory implements DAOSpeciesFactory{ 036 037 protected DBSpecies species = null; 038 039 public DBDAOSpeciesFactory() { 040 super(); 041 } 042 043 044 public DBDAOSpeciesFactory(SingleSpeciesDatabase database) throws DAOException { 045 super(database); 046 this.species = (DBSpecies) database.getSpecies(); 047 048 } 049 050 public DBDAOSpeciesFactory(CollectionDatabase database, CollectionSpecies species) throws DAOException { 051 this(); 052 super.setDatabase(database); 053 this.species = (DBSpecies) species; 054 } 055 056 @Override 057 public DBSpecies getSpecies() { 058 return this.species; 059 } 060 061 @Override 062 public void setSpecies(Species species) { 063 this.species = (DBSpecies) species; 064 } 065 066 067 }