Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Model
v1.09

Uses of Interface
uk.ac.roslin.ensembl.model.core.CoordinateSystem

Packages that use CoordinateSystem
uk.ac.roslin.ensembl.model   
uk.ac.roslin.ensembl.model.core   
uk.ac.roslin.ensembl.model.database   
 

Uses of CoordinateSystem in uk.ac.roslin.ensembl.model
 

Fields in uk.ac.roslin.ensembl.model declared as CoordinateSystem
protected  CoordinateSystem Mapping.sourceCoordSystem
           
protected  CoordinateSystem Mapping.targetCoordSystem
           
 

Uses of CoordinateSystem in uk.ac.roslin.ensembl.model.core
 

Methods in uk.ac.roslin.ensembl.model.core that return CoordinateSystem
 CoordinateSystem DNASequence.getCoordSystem()
           
 

Methods in uk.ac.roslin.ensembl.model.core with parameters of type CoordinateSystem
 void DNASequence.setCoordSystem(CoordinateSystem coordSystem)
           
 

Uses of CoordinateSystem in uk.ac.roslin.ensembl.model.database
 

Methods in uk.ac.roslin.ensembl.model.database that return CoordinateSystem
 CoordinateSystem CollectionCoreDatabase.getBuildCoordSystem(Species species, String featureType)
           
 CoordinateSystem SingleSpeciesCoreDatabase.getBuildCoordSystem(String featureType)
           
 CoordinateSystem SingleSpeciesCoreDatabase.getChromosomeLevelCoordSystem()
           
 CoordinateSystem CollectionCoreDatabase.getChromosomeLevelCS(Species species)
           
 CoordinateSystem SingleSpeciesCoreDatabase.getCSByID(Integer id)
           
 CoordinateSystem CollectionCoreDatabase.getCSByID(Species species, Integer id)
           
 CoordinateSystem SingleSpeciesCoreDatabase.getSequenceLevelCoordSystem()
           
 CoordinateSystem CollectionCoreDatabase.getSequenceLevelCS(Species species)
           
 CoordinateSystem SingleSpeciesCoreDatabase.getTopLevelCoordSystem()
           
 CoordinateSystem CollectionCoreDatabase.getTopLevelCS(Species species)
           
 

Methods in uk.ac.roslin.ensembl.model.database that return types with arguments of type CoordinateSystem
 Set<? extends CoordinateSystem> SingleSpeciesCoreDatabase.getCSForFeature(ObjectType featureType)
           
 Set<? extends CoordinateSystem> CollectionCoreDatabase.getCSForFeature(Species sp, ObjectType feature)
           
 

Methods in uk.ac.roslin.ensembl.model.database with parameters of type CoordinateSystem
 List<? extends ObjectType> SingleSpeciesCoreDatabase.getFeaturesForCS(CoordinateSystem coordSys)
           
 List<? extends ObjectType> CollectionCoreDatabase.getFeaturesForCS(Species sp, CoordinateSystem coordSys)
           
 Integer SingleSpeciesCoreDatabase.getMaxLengthForFeature(ObjectType featureType, CoordinateSystem cs)
           
 Integer CollectionCoreDatabase.getMaxLengthForFeature(Species sp, ObjectType feature, CoordinateSystem cs)
           
 


Ensembl Model
v1.09

Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3