Ensembl Data Access Module v1.09
© Roslin Institute 2010. GNU General Public License, version3
uk.ac.roslin.ensembl.dao.database.compara
Class DBHomologyDAO
java.lang.Object
uk.ac.roslin.ensembl.dao.database.DBBaseDAO
uk.ac.roslin.ensembl.dao.database.compara.DBHomologyDAO
- All Implemented Interfaces:
- uk.ac.roslin.ensembl.dao.compara.HomologyDAO
public class DBHomologyDAO
- extends DBBaseDAO
- implements uk.ac.roslin.ensembl.dao.compara.HomologyDAO
Constructor Summary |
DBHomologyDAO(uk.ac.roslin.ensembl.dao.factory.DAOComparaFactory factory)
|
Method Summary |
List<uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyPairRelationship> |
getHomologiesForGene(uk.ac.roslin.ensembl.model.core.Gene g)
|
HashMap<uk.ac.roslin.ensembl.datasourceaware.core.DADNASequence,uk.ac.roslin.ensembl.model.MappingSet> |
getRegionsOfConservedSynteny(uk.ac.roslin.ensembl.model.core.Chromosome source,
uk.ac.roslin.ensembl.model.Coordinate range,
uk.ac.roslin.ensembl.model.core.Species target)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
DBHomologyDAO
public DBHomologyDAO(uk.ac.roslin.ensembl.dao.factory.DAOComparaFactory factory)
throws uk.ac.roslin.ensembl.exception.DAOException
- Throws:
uk.ac.roslin.ensembl.exception.DAOException
getHomologiesForGene
public List<uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyPairRelationship> getHomologiesForGene(uk.ac.roslin.ensembl.model.core.Gene g)
throws uk.ac.roslin.ensembl.exception.DAOException
- Specified by:
getHomologiesForGene
in interface uk.ac.roslin.ensembl.dao.compara.HomologyDAO
- Throws:
uk.ac.roslin.ensembl.exception.DAOException
getRegionsOfConservedSynteny
public HashMap<uk.ac.roslin.ensembl.datasourceaware.core.DADNASequence,uk.ac.roslin.ensembl.model.MappingSet> getRegionsOfConservedSynteny(uk.ac.roslin.ensembl.model.core.Chromosome source,
uk.ac.roslin.ensembl.model.Coordinate range,
uk.ac.roslin.ensembl.model.core.Species target)
throws uk.ac.roslin.ensembl.exception.DAOException
- Specified by:
getRegionsOfConservedSynteny
in interface uk.ac.roslin.ensembl.dao.compara.HomologyDAO
- Throws:
uk.ac.roslin.ensembl.exception.DAOException
Ensembl Data Access Module v1.09
© Roslin Institute 2010. GNU General Public License, version3