Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Model
v1.09

Uses of Class
uk.ac.roslin.ensembl.model.Coordinate

Packages that use Coordinate
uk.ac.roslin.ensembl.model   
uk.ac.roslin.ensembl.model.compara   
uk.ac.roslin.ensembl.model.core   
 

Uses of Coordinate in uk.ac.roslin.ensembl.model
 

Fields in uk.ac.roslin.ensembl.model declared as Coordinate
protected  Coordinate Mapping.sourceCoordinates
           
protected  Coordinate Mapping.targetCoordinates
           
 

Methods in uk.ac.roslin.ensembl.model that return Coordinate
 Coordinate MappingSet.getExtent()
           
 Coordinate Coordinate.getOverlap(Coordinate test)
           
 Coordinate CoordinateSet.getRange()
           
 Coordinate Mapping.getSourceCoordinates()
           
 Coordinate Mapping.getTargetCoordinates()
           
 

Methods in uk.ac.roslin.ensembl.model with parameters of type Coordinate
 int Coordinate.compareTo(Coordinate o)
           
 Boolean CoordinateSet.containsCoordinateWithoutGaps(Coordinate test)
           
 Coordinate Coordinate.getOverlap(Coordinate test)
           
 CoordinateSet CoordinateSet.getUncoveredRegions(Coordinate test)
           
 Boolean Coordinate.liesWithinCoordinate(Coordinate test)
           
 Boolean Coordinate.overlaps(Coordinate test)
           
 void Mapping.setSourceCoordinates(Coordinate coord)
           
 void Mapping.setTargetCoordinates(Coordinate coord)
           
 

Uses of Coordinate in uk.ac.roslin.ensembl.model.compara
 

Methods in uk.ac.roslin.ensembl.model.compara that return Coordinate
 Coordinate HomologyAlignmentProperties.getCoords()
           
 

Methods in uk.ac.roslin.ensembl.model.compara with parameters of type Coordinate
 void HomologyAlignmentProperties.setCoords(Coordinate coords)
           
 

Uses of Coordinate in uk.ac.roslin.ensembl.model.core
 

Methods in uk.ac.roslin.ensembl.model.core with parameters of type Coordinate
 List<? extends Gene> DNASequence.getGenesOnRegion(Coordinate coord)
           
 HashMap<? extends DNASequence,? extends MappingSet> Chromosome.getRegionsOfConservedSynteny(Coordinate range, Species target)
           
 


Ensembl Model
v1.09

Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3