EnsemblDataMapper v1.09
©
Roslin Institute
2010.
GNU General Public License, version3
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EnsemblDataMapper
v1.09
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B
BooleanTypeHandler
- Class in
uk.ac.roslin.ensembl.mapper.handler
BooleanTypeHandler()
- Constructor for class uk.ac.roslin.ensembl.mapper.handler.
BooleanTypeHandler
C
ChromosomeMapper
- Interface in
uk.ac.roslin.ensembl.mapper.core
CoordinateSystemDefaultVersionTypeHandler
- Class in
uk.ac.roslin.ensembl.mapper.handler
CoordinateSystemDefaultVersionTypeHandler()
- Constructor for class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemDefaultVersionTypeHandler
coordinateSystemID
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
CoordinateSystemSeqLevelTypeHandler
- Class in
uk.ac.roslin.ensembl.mapper.handler
CoordinateSystemSeqLevelTypeHandler()
- Constructor for class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemSeqLevelTypeHandler
CoordinateSystemTypeHandler
- Class in
uk.ac.roslin.ensembl.mapper.handler
CoordinateSystemTypeHandler()
- Constructor for class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemTypeHandler
D
DatabaseMapper
- Interface in
uk.ac.roslin.ensembl.mapper
DBResultHandler
- Interface in
uk.ac.roslin.ensembl.mapper.handler
E
ExonMapper
- Interface in
uk.ac.roslin.ensembl.mapper.core
F
featureID
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
FeatureQuery
- Class in
uk.ac.roslin.ensembl.mapper.query
FeatureQuery()
- Constructor for class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
featureStableID
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
G
geneID
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
GeneMapper
- Interface in
uk.ac.roslin.ensembl.mapper.core
getAllCoreDatabaseNames(int)
- Method in interface uk.ac.roslin.ensembl.mapper.
DatabaseMapper
getAllDatabaseNames()
- Method in interface uk.ac.roslin.ensembl.mapper.
DatabaseMapper
getChromosomeByName_CoordSysID(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
ChromosomeMapper
getChromosomesByCoordSysID(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
ChromosomeMapper
getComponentSequences(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
SequenceMapper
getCoordinateSystemID()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
getCoordSystems(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
SpeciesMapper
getExon(FeatureQuery)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
ExonMapper
getFeatureID()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Get the value of featureID
getFeatureStableID()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Get the value of featureStableID
getGene(FeatureQuery)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
GeneMapper
getGeneID()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Get the value of geneID
getHomologiesForGene(Gene)
- Method in interface uk.ac.roslin.ensembl.mapper.compara.
HomologyPairMapper
getHomologiesForGeneForSpecies(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.compara.
HomologyPairMapper
getListResult()
- Method in interface uk.ac.roslin.ensembl.mapper.handler.
DBResultHandler
getMaximumFeatureLength()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
getObjectResult()
- Method in interface uk.ac.roslin.ensembl.mapper.handler.
DBResultHandler
getParentSequenceID()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Get the value of parentSequenceID
getParentStart()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
getParentStop()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
getProteinFeaturesByTranslationID(int)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
ProteinFeatureMapper
getResult(ResultSet, String)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
BooleanTypeHandler
getResult(CallableStatement, int)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
BooleanTypeHandler
getResult(ResultSet, String)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemDefaultVersionTypeHandler
getResult(CallableStatement, int)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemDefaultVersionTypeHandler
getResult(ResultSet, String)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemSeqLevelTypeHandler
getResult(CallableStatement, int)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemSeqLevelTypeHandler
getResult(ResultSet, String)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemTypeHandler
getResult(CallableStatement, int)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemTypeHandler
getResult(ResultSet, String)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
HomologyTypeHandler
getResult(CallableStatement, int)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
HomologyTypeHandler
getSequence(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
SequenceMapper
getSequenceByID(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
SequenceMapper
getSequenceStart(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
SequenceMapper
getSequenceStartStop(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
SequenceMapper
getSpeciesFromCollection(String)
- Method in interface uk.ac.roslin.ensembl.mapper.
DatabaseMapper
getSpeciesID()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
getSpeciesProperties(String)
- Method in interface uk.ac.roslin.ensembl.mapper.
DatabaseMapper
getTranscript(FeatureQuery)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
TranscriptMapper
getTranscriptID()
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Get the value of transcriptID
getTranslationByTranscriptID(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
TranslationMapper
H
HomologyPairMapper
- Interface in
uk.ac.roslin.ensembl.mapper.compara
HomologyTypeHandler
- Class in
uk.ac.roslin.ensembl.mapper.handler
HomologyTypeHandler()
- Constructor for class uk.ac.roslin.ensembl.mapper.handler.
HomologyTypeHandler
M
maximumFeatureLength
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
P
parentSequenceID
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
parentStart
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
parentStop
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
ProteinFeatureMapper
- Interface in
uk.ac.roslin.ensembl.mapper.core
S
SequenceMapper
- Interface in
uk.ac.roslin.ensembl.mapper.core
setCoordinateSystemID(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
setFeatureCS(HashMap)
- Method in interface uk.ac.roslin.ensembl.mapper.core.
SpeciesMapper
setFeatureID(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Set the value of featureID
setFeatureStableID(String)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Set the value of featureStableID
setGeneID(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Set the value of geneID
setMaximumFeatureLength(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
setParameter(PreparedStatement, int, Object, JdbcType)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
BooleanTypeHandler
setParameter(PreparedStatement, int, Object, JdbcType)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemDefaultVersionTypeHandler
setParameter(PreparedStatement, int, Object, JdbcType)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemSeqLevelTypeHandler
setParameter(PreparedStatement, int, Object, JdbcType)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
CoordinateSystemTypeHandler
setParameter(PreparedStatement, int, Object, JdbcType)
- Method in class uk.ac.roslin.ensembl.mapper.handler.
HomologyTypeHandler
setParentSequenceID(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Set the value of parentSequenceID
setParentStart(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
setParentStop(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
setSpeciesID(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
setTranscriptID(Integer)
- Method in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
Set the value of transcriptID
speciesID
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
SpeciesMapper
- Interface in
uk.ac.roslin.ensembl.mapper.core
T
transcriptID
- Variable in class uk.ac.roslin.ensembl.mapper.query.
FeatureQuery
TranscriptMapper
- Interface in
uk.ac.roslin.ensembl.mapper.core
TranslationMapper
- Interface in
uk.ac.roslin.ensembl.mapper.core
U
uk.ac.roslin.ensembl.mapper
- package uk.ac.roslin.ensembl.mapper
uk.ac.roslin.ensembl.mapper.compara
- package uk.ac.roslin.ensembl.mapper.compara
uk.ac.roslin.ensembl.mapper.core
- package uk.ac.roslin.ensembl.mapper.core
uk.ac.roslin.ensembl.mapper.handler
- package uk.ac.roslin.ensembl.mapper.handler
uk.ac.roslin.ensembl.mapper.query
- package uk.ac.roslin.ensembl.mapper.query
B
C
D
E
F
G
H
M
P
S
T
U
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
EnsemblDataMapper
v1.09
PREV NEXT
FRAMES
NO FRAMES
All Classes
EnsemblDataMapper v1.09
©
Roslin Institute
2010.
GNU General Public License, version3