Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Model
v1.09

Uses of Interface
uk.ac.roslin.ensembl.model.ObjectType

Packages that use ObjectType
uk.ac.roslin.ensembl.config   
uk.ac.roslin.ensembl.model   
uk.ac.roslin.ensembl.model.compara   
uk.ac.roslin.ensembl.model.core   
uk.ac.roslin.ensembl.model.database   
uk.ac.roslin.ensembl.model.relationship   
 

Uses of ObjectType in uk.ac.roslin.ensembl.config
 

Classes in uk.ac.roslin.ensembl.config that implement ObjectType
 class EnsemblComparaDivision
          In 'ensembl.org' there is a single 'ensembl_compara' database which contains the pairwise comparison data on all the species in 'ensembl.org.
 class EnsemblCoordSystemType
           
 class EnsemblCoreObjectType
           
 class EnsemblDBType
          Concrete implementation of DatabaseType interface for representing static Ensembl DatabaseTypes.
 class EnsemblType
           
 class FeatureType
           
 

Uses of ObjectType in uk.ac.roslin.ensembl.model
 

Methods in uk.ac.roslin.ensembl.model that return ObjectType
 ObjectType Mapping.getSourceType()
           
 ObjectType Mapping.getTargetType()
           
 ObjectType IdentifiableObject.getType()
           
 

Methods in uk.ac.roslin.ensembl.model with parameters of type ObjectType
 MappingSet MappableObject.getMappings(ObjectType targetType)
           
 

Uses of ObjectType in uk.ac.roslin.ensembl.model.compara
 

Classes in uk.ac.roslin.ensembl.model.compara that implement ObjectType
 class HomologyType
           
 

Uses of ObjectType in uk.ac.roslin.ensembl.model.core
 

Subinterfaces of ObjectType in uk.ac.roslin.ensembl.model.core
 interface CoordSystemType
           
 interface CoreObjectType
           
 

Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type ObjectType
 HashMap<ObjectType,CoordinateSet> DNASequence.getMappedRegions()
           
 HashMap<ObjectType,? extends MappingSet> DNASequence.getObjectTypeMappings()
           
 

Methods in uk.ac.roslin.ensembl.model.core with parameters of type ObjectType
 void Feature.addMappedObjectType(ObjectType mappedType)
           
 Boolean Feature.isObjectTypeMapped(ObjectType mappedType)
           
 

Uses of ObjectType in uk.ac.roslin.ensembl.model.database
 

Subinterfaces of ObjectType in uk.ac.roslin.ensembl.model.database
 interface DatabaseType
          Interface for representing static DatabaseTypes
 

Methods in uk.ac.roslin.ensembl.model.database that return types with arguments of type ObjectType
 List<? extends ObjectType> SingleSpeciesCoreDatabase.getFeaturesForCS(CoordinateSystem coordSys)
           
 List<? extends ObjectType> CollectionCoreDatabase.getFeaturesForCS(Species sp, CoordinateSystem coordSys)
           
 

Methods in uk.ac.roslin.ensembl.model.database with parameters of type ObjectType
 Set<? extends CoordinateSystem> SingleSpeciesCoreDatabase.getCSForFeature(ObjectType featureType)
           
 Set<? extends CoordinateSystem> CollectionCoreDatabase.getCSForFeature(Species sp, ObjectType feature)
           
 Integer SingleSpeciesCoreDatabase.getMaxLengthForFeature(ObjectType featureType, CoordinateSystem cs)
           
 Integer CollectionCoreDatabase.getMaxLengthForFeature(Species sp, ObjectType feature, CoordinateSystem cs)
           
 

Uses of ObjectType in uk.ac.roslin.ensembl.model.relationship
 

Classes in uk.ac.roslin.ensembl.model.relationship that implement ObjectType
 class RelationshipType
           
 


Ensembl Model
v1.09

Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3