Ensembl Datasource Aware Module v1.09
© Roslin Institute 2010. GNU General Public License, version3
uk.ac.roslin.ensembl.datasourceaware.core
Class DATranscript
java.lang.Object
uk.ac.roslin.ensembl.datasourceaware.DAObject
uk.ac.roslin.ensembl.datasourceaware.core.DACoreObject
uk.ac.roslin.ensembl.datasourceaware.core.DAFeature
uk.ac.roslin.ensembl.datasourceaware.core.DATranscript
- All Implemented Interfaces:
- Serializable, uk.ac.roslin.ensembl.model.core.CoreObject, uk.ac.roslin.ensembl.model.core.Feature, uk.ac.roslin.ensembl.model.core.Transcript, uk.ac.roslin.ensembl.model.IdentifiableObject, uk.ac.roslin.ensembl.model.MappableObject
public class DATranscript
- extends DAFeature
- implements uk.ac.roslin.ensembl.model.core.Transcript
- Author:
- tpaterso
- See Also:
- Serialized Form
Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.core.DAFeature |
addMappedObjectType, addMapping, addXRefs, clearAllMappings, getAnnotationLevelMappings, getBuildLevelMappings, getChromosomeMapping, getCreationDate, getDescription, getDisplayXRef, getMappings, getMappings, getModificationDate, getStatus, getTopLevelMappings, getXRefs, isCurrent, isObjectTypeMapped, setCreationDate, setCurrent, setDescription, setDisplayName, setDisplayXRef, setModificationDate, setStatus |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface uk.ac.roslin.ensembl.model.core.Feature |
addMappedObjectType, getChromosomeMapping, isCurrent, isObjectTypeMapped |
Methods inherited from interface uk.ac.roslin.ensembl.model.MappableObject |
addMapping, clearAllMappings, getMappings, getMappings |
Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject |
getDBVersion, getHashID, getId, getSchemaVersion, setId |
DATranscript
public DATranscript()
DATranscript
public DATranscript(uk.ac.roslin.ensembl.dao.factory.DAOCoreFactory daoFactory)
getType
public uk.ac.roslin.ensembl.model.ObjectType getType()
- Specified by:
getType
in interface uk.ac.roslin.ensembl.model.IdentifiableObject
getTranslation
public DATranslation getTranslation()
- Specified by:
getTranslation
in interface uk.ac.roslin.ensembl.model.core.Transcript
getStableID
public String getStableID()
setStableID
public void setStableID(String stableID)
getBiotype
public String getBiotype()
setBiotype
public void setBiotype(String biotype)
getGene
public DAGene getGene()
- Specified by:
getGene
in interface uk.ac.roslin.ensembl.model.core.Transcript
setGene
public void setGene(DAGene gene)
getGeneID
public Integer getGeneID()
setGeneID
public void setGeneID(Integer geneID)
isCanonical
public boolean isCanonical()
setCanonical
public void setCanonical(boolean canonical)
getDisplayName
public String getDisplayName()
- Overrides:
getDisplayName
in class DAFeature
getExons
public Collection<DAExon> getExons()
- Specified by:
getExons
in interface uk.ac.roslin.ensembl.model.core.Transcript
addExon
public void addExon(uk.ac.roslin.ensembl.model.core.Exon exon)
Ensembl Datasource Aware Module v1.09
© Roslin Institute 2010. GNU General Public License, version3