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Ensembl Model v1.09 |
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java.lang.Objectuk.ac.roslin.ensembl.config.EnsemblType
uk.ac.roslin.ensembl.model.relationship.RelationshipType
uk.ac.roslin.ensembl.model.compara.HomologyType
public class HomologyType
Field Summary | |
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static HomologyType |
APPARENT_ORTHOLOG_ONE2ONE
two homologous objects derived by speciation Ensembl pipeline annotates as apparent_ortholog_one2one see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
BETWEEN_SPECIES_PARALOG
two homologous objects derived by duplication Ensembl pipeline annotates as between_species_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
CONTIGUOUS_GENE_SPLIT
two homologous objects derived by duplication Ensembl pipeline annotates as contiguous_gene_split see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
ORTHOLOG_MANY2MANY
two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_many2many see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
ORTHOLOG_ONE2MANY
two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_one2many see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
ORTHOLOG_ONE2ONE
two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_one2one see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
OTHER_PARALOG
two homologous objects derived by duplication Ensembl pipeline annotates as other_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
POSSIBLE_ORTHOLOG
two homologous objects derived by speciation Ensembl pipeline annotates as possible_ortholog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
PUTATIVE_GENE_SPLIT
two homologous objects derived by duplication Ensembl pipeline annotates as putative_gene_split see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
static HomologyType |
WITHIN_SPECIES_PARALOG
two homologous objects derived by duplication Ensembl pipeline annotates as within_species_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html |
Fields inherited from class uk.ac.roslin.ensembl.model.relationship.RelationshipType |
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UNKNOWN |
Fields inherited from class uk.ac.roslin.ensembl.config.EnsemblType |
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label |
Method Summary | |
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static Collection<HomologyType> |
getAllTypes()
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static HomologyType |
getHomologyTypeByName(String typeName)
Checks to see if the supplied type is the name of a valid HomologyType and returns the corresponding HomologyType object if it is. |
static HomologyType |
getRelationshipType(String value)
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Methods inherited from class uk.ac.roslin.ensembl.model.relationship.RelationshipType |
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equals, hashCode |
Methods inherited from class uk.ac.roslin.ensembl.config.EnsemblType |
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toString |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, notify, notifyAll, wait, wait, wait |
Field Detail |
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public static final HomologyType ORTHOLOG_ONE2ONE
public static final HomologyType ORTHOLOG_ONE2MANY
public static final HomologyType ORTHOLOG_MANY2MANY
public static final HomologyType APPARENT_ORTHOLOG_ONE2ONE
public static final HomologyType POSSIBLE_ORTHOLOG
public static final HomologyType WITHIN_SPECIES_PARALOG
public static final HomologyType BETWEEN_SPECIES_PARALOG
public static final HomologyType OTHER_PARALOG
public static final HomologyType CONTIGUOUS_GENE_SPLIT
public static final HomologyType PUTATIVE_GENE_SPLIT
Method Detail |
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public static final HomologyType getHomologyTypeByName(String typeName)
typeName
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public static HomologyType getRelationshipType(String value)
public static Collection<HomologyType> getAllTypes()
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Ensembl Model v1.09 |
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