001 /** 002 * Copyright (C) 2010 The Roslin Institute <contact andy.law@roslin.ed.ac.uk> 003 * 004 * This file is part of the Ensembl Java API demonstration project developed by the 005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of 006 * Veterinary Studies, University of Edinburgh. 007 * 008 * This is free software: you can redistribute it and/or modify 009 * it under the terms of the GNU General Public License (version 3) as published by 010 * the Free Software Foundation. 011 * 012 * This software is distributed in the hope that it will be useful, 013 * but WITHOUT ANY WARRANTY; without even the implied warranty of 014 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 015 * GNU General Public License for more details. 016 * 017 * You should have received a copy of the GNU General Public License 018 * in this software distribution. If not, see <http://www.gnu.org/licenses/gpl-3.0.html/>. 019 */ 020 021 package uk.ac.roslin.ensembl.model.core; 022 023 public interface ProteinFeature { 024 025 public int getAnalysisID(); 026 027 public void setAnalysisID(int analysisID); 028 029 public Double getEValue(); 030 031 public void setEValue(Double eValue); 032 033 public Double getPercentIdentity(); 034 035 public void setPercentIdentity(Double percentIdentity) ; 036 037 public Double getScore(); 038 039 public void setScore(Double score) ; 040 041 public int getSourceEnd(); 042 043 public void setSourceEnd(int sourceEnd); 044 045 public int getSourceStart(); 046 047 public void setSourceStart(int sourceStart); 048 049 public int getTargetEnd(); 050 051 public void setTargetEnd(int targetEnd); 052 053 public String getTargetName(); 054 055 public void setTargetName(String targetName); 056 057 public int getTargetStart(); 058 059 public void setTargetStart(int targetStart); 060 061 public int getTranslationID(); 062 063 public void setTranslationID(int translationID); 064 065 }