Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Model
v1.09

Uses of Class
uk.ac.roslin.ensembl.model.compara.HomologyType

Packages that use HomologyType
uk.ac.roslin.ensembl.model.compara   
 

Uses of HomologyType in uk.ac.roslin.ensembl.model.compara
 

Fields in uk.ac.roslin.ensembl.model.compara declared as HomologyType
static HomologyType HomologyType.APPARENT_ORTHOLOG_ONE2ONE
          two homologous objects derived by speciation Ensembl pipeline annotates as apparent_ortholog_one2one see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.BETWEEN_SPECIES_PARALOG
          two homologous objects derived by duplication Ensembl pipeline annotates as between_species_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.CONTIGUOUS_GENE_SPLIT
          two homologous objects derived by duplication Ensembl pipeline annotates as contiguous_gene_split see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.ORTHOLOG_MANY2MANY
          two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_many2many see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.ORTHOLOG_ONE2MANY
          two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_one2many see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.ORTHOLOG_ONE2ONE
          two homologous objects derived by speciation Ensembl pipeline annotates as ortholog_one2one see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.OTHER_PARALOG
          two homologous objects derived by duplication Ensembl pipeline annotates as other_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.POSSIBLE_ORTHOLOG
          two homologous objects derived by speciation Ensembl pipeline annotates as possible_ortholog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.PUTATIVE_GENE_SPLIT
          two homologous objects derived by duplication Ensembl pipeline annotates as putative_gene_split see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
static HomologyType HomologyType.WITHIN_SPECIES_PARALOG
          two homologous objects derived by duplication Ensembl pipeline annotates as within_species_paralog see http://Nov2010.archive.ensembl.org/info/docs/compara/homology_method.html
 

Methods in uk.ac.roslin.ensembl.model.compara that return HomologyType
static HomologyType HomologyType.getHomologyTypeByName(String typeName)
          Checks to see if the supplied type is the name of a valid HomologyType and returns the corresponding HomologyType object if it is.
 HomologyType HomologyRelationship.getRelationshipType()
           
static HomologyType HomologyType.getRelationshipType(String value)
           
 

Methods in uk.ac.roslin.ensembl.model.compara that return types with arguments of type HomologyType
static Collection<HomologyType> HomologyType.getAllTypes()
           
 


Ensembl Model
v1.09

Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3