Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3
uk.ac.roslin.ensembl.model.core
Interface Species
- All Known Subinterfaces:
- CollectionSpecies
public interface Species
- Author:
- paterson
getAliases
TreeSet<String> getAliases()
getCommonName
String getCommonName()
getSpeciesBinomial
String getSpeciesBinomial()
getDatabaseStyleName
String getDatabaseStyleName()
getComparaName
String getComparaName()
getShortName
String getShortName()
setProperty
void setProperty(HashMap row)
getCurrentCoreDatabase
CoreDatabase getCurrentCoreDatabase()
getTaxonomyID
String getTaxonomyID()
getDBSpeciesID
Integer getDBSpeciesID(String version)
getEnsemblStablePrefix
String getEnsemblStablePrefix()
getDatabases
TreeSet<? extends Database> getDatabases()
addDatabases
void addDatabases(TreeSet<? extends Database> databases)
addDatabase
void addDatabase(Database database)
getDatabasesByType
TreeSet<? extends Database> getDatabasesByType(DatabaseType type)
getDatabasesByVersion
TreeSet<? extends Database> getDatabasesByVersion(String version)
getDatabaseByTypeAndVersion
Database getDatabaseByTypeAndVersion(DatabaseType type,
String version)
getChromosomeByName
Chromosome getChromosomeByName(String name)
throws DAOException
- Throws:
DAOException
getChromosomeByName
Chromosome getChromosomeByName(String name,
String dbVersion)
throws DAOException
- Throws:
DAOException
getChromosomes
TreeMap<String,? extends Chromosome> getChromosomes()
throws DAOException
- Throws:
DAOException
getChromosomes
TreeMap<String,? extends Chromosome> getChromosomes(String dbVersion)
throws DAOException
- Throws:
DAOException
getSchemaVersions
TreeSet<String> getSchemaVersions()
getDBVersions
TreeSet<String> getDBVersions()
getGeneByID
Gene getGeneByID(Integer id)
throws DAOException
- Throws:
DAOException
getGeneByID
Gene getGeneByID(Integer id,
String dbVersion)
throws DAOException
- Throws:
DAOException
getGeneByStableID
Gene getGeneByStableID(String stableID)
throws DAOException
- Throws:
DAOException
getGeneByStableID
Gene getGeneByStableID(String stableID,
String dbVersion)
throws DAOException
- Throws:
DAOException
getComparaDivision
EnsemblComparaDivision getComparaDivision()
getAssembly
String getAssembly()
getAssembly
String getAssembly(String dbVersion)
Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3