Ensembl Data Access Interface v1.09
© Roslin Institute 2010. GNU General Public License, version3
uk.ac.roslin.ensembl.dao.coreaccess
Interface DNASequenceDAO
public interface DNASequenceDAO
- Author:
- paterson
getSequenceByStartStop
String getSequenceByStartStop(uk.ac.roslin.ensembl.biojava3.EnsemblDNASequenceReader reader,
Integer start,
Integer stop)
throws uk.ac.roslin.ensembl.exception.DAOException
- Throws:
uk.ac.roslin.ensembl.exception.DAOException
getFullSequence
String getFullSequence(uk.ac.roslin.ensembl.biojava3.EnsemblDNASequenceReader reader)
throws uk.ac.roslin.ensembl.exception.DAOException
- Throws:
uk.ac.roslin.ensembl.exception.DAOException
getSequenceByID
uk.ac.roslin.ensembl.model.core.DNASequence getSequenceByID(Integer id)
throws uk.ac.roslin.ensembl.exception.DAOException
- Throws:
uk.ac.roslin.ensembl.exception.DAOException
getValidatedSequence
uk.ac.roslin.ensembl.model.core.DNASequence getValidatedSequence(uk.ac.roslin.ensembl.model.core.DNASequence seq)
throws uk.ac.roslin.ensembl.exception.DAOException
- Throws:
uk.ac.roslin.ensembl.exception.DAOException
getValidatedSequences
List<? extends uk.ac.roslin.ensembl.model.core.DNASequence> getValidatedSequences(List<? extends uk.ac.roslin.ensembl.model.core.DNASequence> sequences)
throws uk.ac.roslin.ensembl.exception.DAOException
- Throws:
uk.ac.roslin.ensembl.exception.DAOException
Ensembl Data Access Interface v1.09
© Roslin Institute 2010. GNU General Public License, version3