EnsemblDataMapper v1.09
© Roslin Institute 2010. GNU General Public License, version3
EnsemblDataMapper
v1.09
B C D E F G H M P S T U

B

BooleanTypeHandler - Class in uk.ac.roslin.ensembl.mapper.handler
 
BooleanTypeHandler() - Constructor for class uk.ac.roslin.ensembl.mapper.handler.BooleanTypeHandler
 

C

ChromosomeMapper - Interface in uk.ac.roslin.ensembl.mapper.core
 
CoordinateSystemDefaultVersionTypeHandler - Class in uk.ac.roslin.ensembl.mapper.handler
 
CoordinateSystemDefaultVersionTypeHandler() - Constructor for class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemDefaultVersionTypeHandler
 
coordinateSystemID - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
CoordinateSystemSeqLevelTypeHandler - Class in uk.ac.roslin.ensembl.mapper.handler
 
CoordinateSystemSeqLevelTypeHandler() - Constructor for class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemSeqLevelTypeHandler
 
CoordinateSystemTypeHandler - Class in uk.ac.roslin.ensembl.mapper.handler
 
CoordinateSystemTypeHandler() - Constructor for class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemTypeHandler
 

D

DatabaseMapper - Interface in uk.ac.roslin.ensembl.mapper
 
DBResultHandler - Interface in uk.ac.roslin.ensembl.mapper.handler
 

E

ExonMapper - Interface in uk.ac.roslin.ensembl.mapper.core
 

F

featureID - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
FeatureQuery - Class in uk.ac.roslin.ensembl.mapper.query
 
FeatureQuery() - Constructor for class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
featureStableID - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 

G

geneID - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
GeneMapper - Interface in uk.ac.roslin.ensembl.mapper.core
 
getAllCoreDatabaseNames(int) - Method in interface uk.ac.roslin.ensembl.mapper.DatabaseMapper
 
getAllDatabaseNames() - Method in interface uk.ac.roslin.ensembl.mapper.DatabaseMapper
 
getChromosomeByName_CoordSysID(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.ChromosomeMapper
 
getChromosomesByCoordSysID(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.ChromosomeMapper
 
getComponentSequences(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.SequenceMapper
 
getCoordinateSystemID() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
getCoordSystems(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.SpeciesMapper
 
getExon(FeatureQuery) - Method in interface uk.ac.roslin.ensembl.mapper.core.ExonMapper
 
getFeatureID() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Get the value of featureID
getFeatureStableID() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Get the value of featureStableID
getGene(FeatureQuery) - Method in interface uk.ac.roslin.ensembl.mapper.core.GeneMapper
 
getGeneID() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Get the value of geneID
getHomologiesForGene(Gene) - Method in interface uk.ac.roslin.ensembl.mapper.compara.HomologyPairMapper
 
getHomologiesForGeneForSpecies(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.compara.HomologyPairMapper
 
getListResult() - Method in interface uk.ac.roslin.ensembl.mapper.handler.DBResultHandler
 
getMaximumFeatureLength() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
getObjectResult() - Method in interface uk.ac.roslin.ensembl.mapper.handler.DBResultHandler
 
getParentSequenceID() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Get the value of parentSequenceID
getParentStart() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
getParentStop() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
getProteinFeaturesByTranslationID(int) - Method in interface uk.ac.roslin.ensembl.mapper.core.ProteinFeatureMapper
 
getResult(ResultSet, String) - Method in class uk.ac.roslin.ensembl.mapper.handler.BooleanTypeHandler
 
getResult(CallableStatement, int) - Method in class uk.ac.roslin.ensembl.mapper.handler.BooleanTypeHandler
 
getResult(ResultSet, String) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemDefaultVersionTypeHandler
 
getResult(CallableStatement, int) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemDefaultVersionTypeHandler
 
getResult(ResultSet, String) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemSeqLevelTypeHandler
 
getResult(CallableStatement, int) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemSeqLevelTypeHandler
 
getResult(ResultSet, String) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemTypeHandler
 
getResult(CallableStatement, int) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemTypeHandler
 
getResult(ResultSet, String) - Method in class uk.ac.roslin.ensembl.mapper.handler.HomologyTypeHandler
 
getResult(CallableStatement, int) - Method in class uk.ac.roslin.ensembl.mapper.handler.HomologyTypeHandler
 
getSequence(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.SequenceMapper
 
getSequenceByID(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.SequenceMapper
 
getSequenceStart(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.SequenceMapper
 
getSequenceStartStop(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.SequenceMapper
 
getSpeciesFromCollection(String) - Method in interface uk.ac.roslin.ensembl.mapper.DatabaseMapper
 
getSpeciesID() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
getSpeciesProperties(String) - Method in interface uk.ac.roslin.ensembl.mapper.DatabaseMapper
 
getTranscript(FeatureQuery) - Method in interface uk.ac.roslin.ensembl.mapper.core.TranscriptMapper
 
getTranscriptID() - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Get the value of transcriptID
getTranslationByTranscriptID(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.TranslationMapper
 

H

HomologyPairMapper - Interface in uk.ac.roslin.ensembl.mapper.compara
 
HomologyTypeHandler - Class in uk.ac.roslin.ensembl.mapper.handler
 
HomologyTypeHandler() - Constructor for class uk.ac.roslin.ensembl.mapper.handler.HomologyTypeHandler
 

M

maximumFeatureLength - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 

P

parentSequenceID - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
parentStart - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
parentStop - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
ProteinFeatureMapper - Interface in uk.ac.roslin.ensembl.mapper.core
 

S

SequenceMapper - Interface in uk.ac.roslin.ensembl.mapper.core
 
setCoordinateSystemID(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
setFeatureCS(HashMap) - Method in interface uk.ac.roslin.ensembl.mapper.core.SpeciesMapper
 
setFeatureID(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Set the value of featureID
setFeatureStableID(String) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Set the value of featureStableID
setGeneID(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Set the value of geneID
setMaximumFeatureLength(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
setParameter(PreparedStatement, int, Object, JdbcType) - Method in class uk.ac.roslin.ensembl.mapper.handler.BooleanTypeHandler
 
setParameter(PreparedStatement, int, Object, JdbcType) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemDefaultVersionTypeHandler
 
setParameter(PreparedStatement, int, Object, JdbcType) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemSeqLevelTypeHandler
 
setParameter(PreparedStatement, int, Object, JdbcType) - Method in class uk.ac.roslin.ensembl.mapper.handler.CoordinateSystemTypeHandler
 
setParameter(PreparedStatement, int, Object, JdbcType) - Method in class uk.ac.roslin.ensembl.mapper.handler.HomologyTypeHandler
 
setParentSequenceID(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Set the value of parentSequenceID
setParentStart(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
setParentStop(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
setSpeciesID(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
setTranscriptID(Integer) - Method in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
Set the value of transcriptID
speciesID - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
SpeciesMapper - Interface in uk.ac.roslin.ensembl.mapper.core
 

T

transcriptID - Variable in class uk.ac.roslin.ensembl.mapper.query.FeatureQuery
 
TranscriptMapper - Interface in uk.ac.roslin.ensembl.mapper.core
 
TranslationMapper - Interface in uk.ac.roslin.ensembl.mapper.core
 

U

uk.ac.roslin.ensembl.mapper - package uk.ac.roslin.ensembl.mapper
 
uk.ac.roslin.ensembl.mapper.compara - package uk.ac.roslin.ensembl.mapper.compara
 
uk.ac.roslin.ensembl.mapper.core - package uk.ac.roslin.ensembl.mapper.core
 
uk.ac.roslin.ensembl.mapper.handler - package uk.ac.roslin.ensembl.mapper.handler
 
uk.ac.roslin.ensembl.mapper.query - package uk.ac.roslin.ensembl.mapper.query
 

B C D E F G H M P S T U
EnsemblDataMapper
v1.09

EnsemblDataMapper v1.09
© Roslin Institute 2010. GNU General Public License, version3