Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Model
v1.09

uk.ac.roslin.ensembl.biojava3
Interface EnsemblDNASequenceReader

All Superinterfaces:
org.biojava3.core.sequence.template.Accessioned, Iterable<org.biojava3.core.sequence.compound.NucleotideCompound>, org.biojava3.core.sequence.template.ProxySequenceReader<org.biojava3.core.sequence.compound.NucleotideCompound>, org.biojava3.core.sequence.template.Sequence<org.biojava3.core.sequence.compound.NucleotideCompound>, org.biojava3.core.sequence.template.SequenceReader<org.biojava3.core.sequence.compound.NucleotideCompound>, Serializable

public interface EnsemblDNASequenceReader
extends org.biojava3.core.sequence.template.ProxySequenceReader<org.biojava3.core.sequence.compound.NucleotideCompound>, Serializable

Author:
paterson

Method Summary
 Integer getCoordSystemID()
           
 Integer getLengthInteger()
           
 String getName()
           
 String getReverseComplementSequenceAsString(Integer start, Integer end)
           
 Integer getSeqRegionID()
           
 void setCoordSystemID(Integer coordSystemID)
           
 void setLength(Integer length)
           
 void setName(String name)
           
 void setSeqRegionID(Integer seqRegionID)
           
 
Methods inherited from interface org.biojava3.core.sequence.template.SequenceReader
setCompoundSet, setContents
 
Methods inherited from interface org.biojava3.core.sequence.template.Sequence
countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence
 
Methods inherited from interface java.lang.Iterable
iterator
 
Methods inherited from interface org.biojava3.core.sequence.template.Accessioned
getAccession
 

Method Detail

getName

String getName()

setName

void setName(String name)

getCoordSystemID

Integer getCoordSystemID()

setCoordSystemID

void setCoordSystemID(Integer coordSystemID)

getLengthInteger

Integer getLengthInteger()

setLength

void setLength(Integer length)

getSeqRegionID

Integer getSeqRegionID()

setSeqRegionID

void setSeqRegionID(Integer seqRegionID)

getReverseComplementSequenceAsString

String getReverseComplementSequenceAsString(Integer start,
                                            Integer end)

Ensembl Model
v1.09

Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3