001 /** 002 * Copyright (C) 2011 The Roslin Institute <contact andy.law@roslin.ed.ac.uk> 003 * 004 * This file is part of the Ensembl Java API demonstration project developed by the 005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of 006 * Veterinary Studies, University of Edinburgh. 007 * 008 * This is free software: you can redistribute it and/or modify 009 * it under the terms of the GNU General Public License (version 3) as published by 010 * the Free Software Foundation. 011 * 012 * This software is distributed in the hope that it will be useful, 013 * but WITHOUT ANY WARRANTY; without even the implied warranty of 014 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 015 * GNU General Public License for more details. 016 * 017 * You should have received a copy of the GNU General Public License 018 * in this software distribution. If not, see <http://www.gnu.org/licenses/gpl-3.0.html/>. 019 */ 020 package uk.ac.roslin.ensembl.model.core; 021 022 /** 023 * 024 * @author tpaterso 025 */ 026 public interface Exon extends Feature { 027 028 public static class Phase { 029 public static int ZERO = 0; 030 public static int ONE = 1; 031 public static int TWO = 2; 032 public static int NONE = -1; 033 034 public static int getPhase(int p) { 035 if (p==0) { 036 return ZERO; 037 } 038 else if (p==1) { 039 return ONE; 040 } 041 else if (p==2) { 042 return TWO; 043 } 044 else return NONE; 045 } 046 } 047 048 049 050 public int getPhase() ; 051 052 public Boolean isConstitutive() ; 053 054 }