Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Model
v1.09

uk.ac.roslin.ensembl.model
Class CoordinateSet

java.lang.Object
  extended by java.util.AbstractCollection<E>
      extended by java.util.AbstractSet<E>
          extended by java.util.TreeSet<Coordinate>
              extended by uk.ac.roslin.ensembl.model.CoordinateSet
All Implemented Interfaces:
Serializable, Cloneable, Iterable<Coordinate>, Collection<Coordinate>, NavigableSet<Coordinate>, Set<Coordinate>, SortedSet<Coordinate>

public class CoordinateSet
extends TreeSet<Coordinate>
implements Serializable

Author:
tpaterso
See Also:
Serialized Form

Constructor Summary
CoordinateSet()
           
 
Method Summary
 Boolean containsCoordinateWithoutGaps(Coordinate test)
           
 Integer getEnd()
           
 CoordinateSet getGaps()
           
 Coordinate getRange()
           
 Integer getStart()
           
 CoordinateSet getUncoveredRegions(Coordinate test)
           
 
Methods inherited from class java.util.TreeSet
add, addAll, ceiling, clear, clone, comparator, contains, descendingIterator, descendingSet, first, floor, headSet, headSet, higher, isEmpty, iterator, last, lower, pollFirst, pollLast, remove, size, subSet, subSet, tailSet, tailSet
 
Methods inherited from class java.util.AbstractSet
equals, hashCode, removeAll
 
Methods inherited from class java.util.AbstractCollection
containsAll, retainAll, toArray, toArray, toString
 
Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface java.util.Set
containsAll, equals, hashCode, removeAll, retainAll, toArray, toArray
 

Constructor Detail

CoordinateSet

public CoordinateSet()
Method Detail

getStart

public Integer getStart()

getEnd

public Integer getEnd()

getRange

public Coordinate getRange()

getGaps

public CoordinateSet getGaps()

containsCoordinateWithoutGaps

public Boolean containsCoordinateWithoutGaps(Coordinate test)

getUncoveredRegions

public CoordinateSet getUncoveredRegions(Coordinate test)

Ensembl Model
v1.09

Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3