001    /**
002     * Copyright (C) 2010 The Roslin Institute <contact andy.law@roslin.ed.ac.uk>
003     *
004     * This file is part of the Ensembl Java API demonstration project developed by the
005     * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of
006     * Veterinary Studies, University of Edinburgh.
007     *
008     * This is free software: you can redistribute it and/or modify
009     * it under the terms of the GNU General Public License (version 3) as published by
010     * the Free Software Foundation.
011     *
012     * This software is distributed in the hope that it will be useful,
013     * but WITHOUT ANY WARRANTY; without even the implied warranty of
014     * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
015     * GNU General Public License for more details.
016     *
017     * You should have received a copy of the GNU General Public License
018     * in this software distribution. If not, see <http://www.gnu.org/licenses/gpl-3.0.html/>.
019     */
020    
021    package uk.ac.roslin.ensembl.dao.factory;
022    
023    import uk.ac.roslin.ensembl.config.EnsemblComparaDivision;
024    import uk.ac.roslin.ensembl.dao.coreaccess.ChromosomeDAO;
025    import uk.ac.roslin.ensembl.dao.coreaccess.GeneDAO;
026    import uk.ac.roslin.ensembl.dao.coreaccess.ProteinFeatureDAO;
027    import uk.ac.roslin.ensembl.dao.coreaccess.AssemblyDAO;
028    import uk.ac.roslin.ensembl.dao.coreaccess.CoordinateSystemDAO;
029    import uk.ac.roslin.ensembl.dao.coreaccess.DNASequenceDAO;
030    import uk.ac.roslin.ensembl.dao.coreaccess.ExonDAO;
031    import uk.ac.roslin.ensembl.dao.coreaccess.TranscriptDAO;
032    import uk.ac.roslin.ensembl.dao.coreaccess.TranslationDAO;
033    import uk.ac.roslin.ensembl.exception.DAOException;
034    
035    public interface DAOCoreFactory extends DAOFactory  {
036    
037        public GeneDAO getGeneDAO() throws DAOException;
038        public ProteinFeatureDAO getProteinFeatureDAO() throws DAOException;
039        public ChromosomeDAO getChromosomeDAO() throws DAOException;
040        public CoordinateSystemDAO getCoordinateSystemDAO() throws DAOException;
041        public AssemblyDAO getAssemblyDAO() throws DAOException;
042        public DNASequenceDAO getSequenceDAO() throws DAOException;
043        public TranslationDAO getTranslationDAO() throws DAOException;
044        public TranscriptDAO getTranscriptDAO()  throws DAOException;
045        public ExonDAO getExonDAO()  throws DAOException;
046        public DAOComparaFactory getComparaFactory(EnsemblComparaDivision comparaDivision);
047    
048    
049    
050    }