001 /** 002 * Copyright (C) 2010 The Roslin Institute <contact andy.law@roslin.ed.ac.uk> 003 * 004 * This file is part of the Ensembl Java API demonstration project developed by the 005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of 006 * Veterinary Studies, University of Edinburgh. 007 * 008 * This is free software: you can redistribute it and/or modify 009 * it under the terms of the GNU General Public License (version 3) as published by 010 * the Free Software Foundation. 011 * 012 * This software is distributed in the hope that it will be useful, 013 * but WITHOUT ANY WARRANTY; without even the implied warranty of 014 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 015 * GNU General Public License for more details. 016 * 017 * You should have received a copy of the GNU General Public License 018 * in this software distribution. If not, see <http://www.gnu.org/licenses/gpl-3.0.html/>. 019 */ 020 021 package uk.ac.roslin.ensembl.dao.database.factory; 022 023 import uk.ac.roslin.ensembl.exception.DAOException; 024 import uk.ac.roslin.ensembl.exception.ConfigurationException; 025 import uk.ac.roslin.ensembl.exception.EnsemblException; 026 import uk.ac.roslin.ensembl.dao.factory.DAOSingleSpeciesFactory; 027 import uk.ac.roslin.ensembl.config.EnsemblDBType; 028 import uk.ac.roslin.ensembl.model.database.DatabaseType; 029 import uk.ac.roslin.ensembl.model.database.SingleSpeciesDatabase; 030 031 032 public abstract class DBDAOSingleSpeciesFactory extends DBDAOSpeciesFactory implements DAOSingleSpeciesFactory { 033 034 protected String genus_species; 035 036 public DBDAOSingleSpeciesFactory() { 037 super(); 038 } 039 public DBDAOSingleSpeciesFactory(SingleSpeciesDatabase database) throws DAOException { 040 super(database); 041 this.setGenus_Species(database.getDbSpeciesName()); 042 } 043 044 045 @Override 046 public void setGenus_Species(String genus_species) { 047 this.genus_species = genus_species; 048 } 049 050 @Override 051 public String getGenus_Species() { 052 return genus_species; 053 } 054 055 public static DBDAOSingleSpeciesFactory makeFactory(SingleSpeciesDatabase database) throws EnsemblException { 056 057 DatabaseType type = database.getType(); 058 059 if (type.equals(EnsemblDBType.core)) { 060 return new DBDAOSingleSpeciesCoreFactory(database); 061 } 062 else if (type.equals(EnsemblDBType.funcgen)) { 063 return new DBDAOSingleSpeciesFuncgenFactory(database); 064 } 065 else if (type.equals(EnsemblDBType.variation)) { 066 return new DBDAOSingleSpeciesVariationFactory(database); 067 } 068 else { 069 throw new ConfigurationException("The Factory could not make a DBDAOSingleSpeciesFactory of EnsemblDBType: "+type.toString()); 070 } 071 072 } 073 074 @Override 075 public SingleSpeciesDatabase getDatabase() { 076 return (SingleSpeciesDatabase) this.database; 077 } 078 }