Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Model
v1.09

Uses of Interface
uk.ac.roslin.ensembl.model.core.Gene

Packages that use Gene
uk.ac.roslin.ensembl.model.compara   
uk.ac.roslin.ensembl.model.core   
 

Uses of Gene in uk.ac.roslin.ensembl.model.compara
 

Classes in uk.ac.roslin.ensembl.model.compara with type parameters of type Gene
 interface HomologyPairRelationship<CLAZZ extends Gene>
          extends HomologyRelationship for those Relationships that are binary
 interface HomologyRelationship<CLAZZ extends Gene>
          Ensembl schema and PerlAPI claims that homology relationships are not necessarily only binary, i.e. the could have more than two members.
 

Uses of Gene in uk.ac.roslin.ensembl.model.core
 

Methods in uk.ac.roslin.ensembl.model.core that return Gene
 Gene Transcript.getGene()
           
 Gene Species.getGeneByID(Integer id)
           
 Gene Species.getGeneByID(Integer id, String dbVersion)
           
 Gene Species.getGeneByStableID(String stableID)
           
 Gene Species.getGeneByStableID(String stableID, String dbVersion)
           
 

Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type Gene
 List<? extends Gene> DNASequence.getGenesOnRegion(Coordinate coord)
           
 List<? extends Gene> DNASequence.getGenesOnRegion(Integer start, Integer stop)
           
 List<? extends Gene> DNASequence.getGenesOnRegion(Integer start, Integer stop, Coordinate.Strand strand)
           
 


Ensembl Model
v1.09

Ensembl Model v1.09
© Roslin Institute 2010. GNU General Public License, version3