Ensembl Data Access Interface v1.09
©
Roslin Institute
2010.
GNU General Public License, version3
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Ensembl Data Access Interface
v1.09
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A
addGeneByIDOnParent(Integer, DNASequence)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
GeneDAO
addGeneByStableIDOnParent(String, DNASequence)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
GeneDAO
AssemblyDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
C
ChromosomeDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
CoordinateSystemDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
D
DAOCollectionCoreFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOCollectionFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOCollectionFuncgenFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOCollectionVariationFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOComparaFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOCoreFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOFuncgenFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOSingleSpeciesCoreFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOSingleSpeciesFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOSpeciesFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DAOVariationFactory
- Interface in
uk.ac.roslin.ensembl.dao.factory
DatabaseDAO
- Interface in
uk.ac.roslin.ensembl.dao
DNASequenceDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
E
ExonDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
G
GeneDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
getAllCoreDatabasesForVersion(int)
- Method in interface uk.ac.roslin.ensembl.dao.
DatabaseDAO
getAssemblyDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getChromosomeByName(String)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
ChromosomeDAO
getChromosomeDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getChromosomes()
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
ChromosomeDAO
getCollectionSpeciesProperties(CollectionCoreDatabase)
- Method in interface uk.ac.roslin.ensembl.dao.
DatabaseDAO
getComparaDivision()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOComparaFactory
getComparaFactory(EnsemblComparaDivision)
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getComponentMappingsByStartStop(DNASequence, Integer, Integer)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
AssemblyDAO
getConfiguration()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getCoordinateSystemDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getCoordinateSystems()
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
CoordinateSystemDAO
getDatabase()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCollectionCoreFactory
getDatabase()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getDatabase()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOSingleSpeciesCoreFactory
getDatabaseName()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getDatabases()
- Method in interface uk.ac.roslin.ensembl.dao.
DatabaseDAO
getDBType()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getDBVersion()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getEnsemblSchemaVersion()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getExonByID(Integer)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
ExonDAO
getExonByStableID(String)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
ExonDAO
getExonDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getExonsForTranscript(Transcript)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
ExonDAO
getFullSequence(EnsemblDNASequenceReader)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
DNASequenceDAO
getGeneByID(Integer)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
GeneDAO
getGeneByStableID(String)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
GeneDAO
getGeneDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getGeneMappingsOnRegion(DNASequence, Coordinate)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
GeneDAO
getGenus_Species()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOSingleSpeciesFactory
getHomologiesForGene(Gene)
- Method in interface uk.ac.roslin.ensembl.dao.compara.
HomologyDAO
getHomologyDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOComparaFactory
getMybatisSchemaFilePath()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getNewSqlSession()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getProteinFeatureDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getProteinFeaturesByTranslationID(int)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
ProteinFeatureDAO
getRegionsOfConservedSynteny(Chromosome, Coordinate, Species)
- Method in interface uk.ac.roslin.ensembl.dao.compara.
HomologyDAO
getRegistry()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
getSequenceByID(Integer)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
DNASequenceDAO
getSequenceByStartStop(EnsemblDNASequenceReader, Integer, Integer)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
DNASequenceDAO
getSequenceDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getSpecies()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCollectionFactory
getSpecies()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOSpeciesFactory
getSpeciesProperties(SingleSpeciesCoreDatabase)
- Method in interface uk.ac.roslin.ensembl.dao.
DatabaseDAO
getTranscriptByID(Integer)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
TranscriptDAO
getTranscriptByStableID(String)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
TranscriptDAO
getTranscriptDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getTranscriptsForGene(Gene)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
TranscriptDAO
getTranslationByTranscriptID(Integer)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
TranslationDAO
getTranslationDAO()
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOCoreFactory
getValidatedSequence(DNASequence)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
DNASequenceDAO
getValidatedSequences(List<? extends DNASequence>)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
DNASequenceDAO
H
HomologyDAO
- Interface in
uk.ac.roslin.ensembl.dao.compara
P
ProteinFeatureDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
R
ReInitializationDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
reInitialize(CoreObject)
- Method in interface uk.ac.roslin.ensembl.dao.coreaccess.
ReInitializationDAO
S
setDatabaseName(String)
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
setDBType(DatabaseType)
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
setDBVersion(String)
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
setEnsemblSchemaVersion(String)
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
setGenus_Species(String)
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOSingleSpeciesFactory
setMybatisSchemaFilePath(String)
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOFactory
setSpecies(Species)
- Method in interface uk.ac.roslin.ensembl.dao.factory.
DAOSpeciesFactory
T
TranscriptDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
TranslationDAO
- Interface in
uk.ac.roslin.ensembl.dao.coreaccess
U
uk.ac.roslin.ensembl.dao
- package uk.ac.roslin.ensembl.dao
uk.ac.roslin.ensembl.dao.compara
- package uk.ac.roslin.ensembl.dao.compara
uk.ac.roslin.ensembl.dao.coreaccess
- package uk.ac.roslin.ensembl.dao.coreaccess
uk.ac.roslin.ensembl.dao.factory
- package uk.ac.roslin.ensembl.dao.factory
A
C
D
E
G
H
P
R
S
T
U
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
Ensembl Data Access Interface
v1.09
PREV NEXT
FRAMES
NO FRAMES
All Classes
Ensembl Data Access Interface v1.09
©
Roslin Institute
2010.
GNU General Public License, version3