001 /** 002 * Copyright (C) 2010 The Roslin Institute <contact andy.law@roslin.ed.ac.uk> 003 * 004 * This file is part of the Ensembl Java API demonstration project developed by the 005 * Bioinformatics Group at The Roslin Institute, The Royal (Dick) School of 006 * Veterinary Studies, University of Edinburgh. 007 * 008 * This is free software: you can redistribute it and/or modify 009 * it under the terms of the GNU General Public License (version 3) as published by 010 * the Free Software Foundation. 011 * 012 * This software is distributed in the hope that it will be useful, 013 * but WITHOUT ANY WARRANTY; without even the implied warranty of 014 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 015 * GNU General Public License for more details. 016 * 017 * You should have received a copy of the GNU General Public License 018 * in this software distribution. If not, see <http://www.gnu.org/licenses/gpl-3.0.html/>. 019 */ 020 package uk.ac.roslin.ensembl.datasourceaware.compara; 021 022 import java.util.List; 023 import java.util.TreeSet; 024 import uk.ac.roslin.ensembl.datasourceaware.core.DAGene; 025 import uk.ac.roslin.ensembl.model.compara.HomologyAlignmentProperties; 026 import uk.ac.roslin.ensembl.model.compara.HomologyType; 027 import uk.ac.roslin.ensembl.model.core.Species; 028 import uk.ac.roslin.ensembl.model.relationship.InverseBinaryRelationshipView; 029 030 public class InverseHomologyPairRelationshipView 031 extends DAHomologyPairRelationship 032 implements InverseBinaryRelationshipView<DAHomologyPairRelationship> { 033 034 DAHomologyPairRelationship originalHPR; 035 036 public InverseHomologyPairRelationshipView(DAHomologyPairRelationship original) { 037 originalHPR = original; 038 } 039 040 @Override 041 public HomologyAlignmentProperties getSourceProperties() { 042 return this.originalHPR.getTargetProperties(); 043 } 044 045 @Override 046 public HomologyAlignmentProperties getTargetProperties() { 047 return this.originalHPR.getSourceProperties(); 048 } 049 050 @Override 051 public DAGene getSource() { 052 return this.originalHPR.getTarget(); 053 } 054 055 @Override 056 public DAGene getTarget() { 057 return this.originalHPR.getSource(); 058 } 059 060 @Override 061 public DAHomologyPairRelationship getBinaryRelationship() { 062 return this.originalHPR; 063 } 064 065 @Override 066 public TreeSet<DAGene> getMembers() { 067 return this.originalHPR.getMembers(); 068 } 069 070 @Override 071 public List<Species> getSpecies() { 072 return this.originalHPR.getSpecies(); 073 } 074 075 @Override 076 public HomologyType getType() { 077 return this.originalHPR.getType(); 078 } 079 080 @Override 081 public HomologyType getRelationshipType() { 082 return this.originalHPR.getRelationshipType(); 083 } 084 085 @Override 086 public String getLastCommonAncestor() { 087 return this.originalHPR.getLastCommonAncestor(); 088 } 089 }