Ensembl Data Access Module v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Data Access Module
v1.09

uk.ac.roslin.ensembl.dao.database.coreaccess
Class DBAssemblyDAO

java.lang.Object
  extended by uk.ac.roslin.ensembl.dao.database.DBBaseDAO
      extended by uk.ac.roslin.ensembl.dao.database.coreaccess.DBCoreObjectDAO
          extended by uk.ac.roslin.ensembl.dao.database.coreaccess.DBAssemblyDAO
All Implemented Interfaces:
uk.ac.roslin.ensembl.dao.coreaccess.AssemblyDAO

public class DBAssemblyDAO
extends DBCoreObjectDAO
implements uk.ac.roslin.ensembl.dao.coreaccess.AssemblyDAO

Author:
paterson

Field Summary
 
Fields inherited from class uk.ac.roslin.ensembl.dao.database.coreaccess.DBCoreObjectDAO
collFactory, singleSpecies, species, ssFactory
 
Fields inherited from class uk.ac.roslin.ensembl.dao.database.DBBaseDAO
configuration, daoFactory
 
Constructor Summary
DBAssemblyDAO()
           
DBAssemblyDAO(uk.ac.roslin.ensembl.dao.factory.DAOCollectionCoreFactory factory)
           
DBAssemblyDAO(uk.ac.roslin.ensembl.dao.factory.DAOSingleSpeciesCoreFactory factory)
           
 
Method Summary
 uk.ac.roslin.ensembl.model.MappingSet getComponentMappingsByStartStop(uk.ac.roslin.ensembl.model.core.DNASequence assembledSequence, Integer begin, Integer stop)
           
 
Methods inherited from class uk.ac.roslin.ensembl.dao.database.coreaccess.DBCoreObjectDAO
getSpecies, isSingleSpecies, setFactory, setFactory
 
Methods inherited from class uk.ac.roslin.ensembl.dao.database.DBBaseDAO
getFactory, setConfiguration, setFactory
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DBAssemblyDAO

public DBAssemblyDAO()

DBAssemblyDAO

public DBAssemblyDAO(uk.ac.roslin.ensembl.dao.factory.DAOSingleSpeciesCoreFactory factory)

DBAssemblyDAO

public DBAssemblyDAO(uk.ac.roslin.ensembl.dao.factory.DAOCollectionCoreFactory factory)
Method Detail

getComponentMappingsByStartStop

public uk.ac.roslin.ensembl.model.MappingSet getComponentMappingsByStartStop(uk.ac.roslin.ensembl.model.core.DNASequence assembledSequence,
                                                                             Integer begin,
                                                                             Integer stop)
                                                                      throws uk.ac.roslin.ensembl.exception.DAOException
Specified by:
getComponentMappingsByStartStop in interface uk.ac.roslin.ensembl.dao.coreaccess.AssemblyDAO
Throws:
uk.ac.roslin.ensembl.exception.DAOException

Ensembl Data Access Module
v1.09

Ensembl Data Access Module v1.09
© Roslin Institute 2010. GNU General Public License, version3