Ensembl Data Access Interface v1.09
© Roslin Institute 2010. GNU General Public License, version3
Ensembl Data Access Interface
v1.09

uk.ac.roslin.ensembl.dao.compara
Interface HomologyDAO


public interface HomologyDAO


Method Summary
 List<? extends uk.ac.roslin.ensembl.model.compara.HomologyPairRelationship> getHomologiesForGene(uk.ac.roslin.ensembl.model.core.Gene g)
           
 HashMap<? extends uk.ac.roslin.ensembl.model.core.DNASequence,? extends uk.ac.roslin.ensembl.model.MappingSet> getRegionsOfConservedSynteny(uk.ac.roslin.ensembl.model.core.Chromosome source, uk.ac.roslin.ensembl.model.Coordinate range, uk.ac.roslin.ensembl.model.core.Species target)
           
 

Method Detail

getHomologiesForGene

List<? extends uk.ac.roslin.ensembl.model.compara.HomologyPairRelationship> getHomologiesForGene(uk.ac.roslin.ensembl.model.core.Gene g)
                                                                                                 throws uk.ac.roslin.ensembl.exception.DAOException
Throws:
uk.ac.roslin.ensembl.exception.DAOException

getRegionsOfConservedSynteny

HashMap<? extends uk.ac.roslin.ensembl.model.core.DNASequence,? extends uk.ac.roslin.ensembl.model.MappingSet> getRegionsOfConservedSynteny(uk.ac.roslin.ensembl.model.core.Chromosome source,
                                                                                                                                            uk.ac.roslin.ensembl.model.Coordinate range,
                                                                                                                                            uk.ac.roslin.ensembl.model.core.Species target)
                                                                                                                                            throws uk.ac.roslin.ensembl.exception.DAOException
Throws:
uk.ac.roslin.ensembl.exception.DAOException

Ensembl Data Access Interface
v1.09

Ensembl Data Access Interface v1.09
© Roslin Institute 2010. GNU General Public License, version3