Class Summary |
Abstraction |
A link to another pathway from a pathway. |
ActivityStateLabel |
Label containing the info about the activity state |
Agent |
|
AliasName |
Alternative name for a protein |
ChemicalAbstractName |
Chemical Abstract reference, used for chemical compounds |
Complex |
Type of molecule, composed of sub-unit (Complex Components) |
ComplexComponent |
A Complex Component is of of the building block composing a complex molecule. |
Compound |
Type of molecule, chemical compound, usually bio-active. |
Condition |
A generic condition, influencing an interaction |
EntrezGeneName |
Entrez Gene reference |
FamilyMember |
A molecule member of a family (higher order). |
FunctionLabel |
|
GeneOntologyName |
Gene Ontology reference |
Inhibitor |
|
Input |
|
Interaction |
Interaction between two entities |
InteractionComponent |
An entity interacting in an interaction. |
Label |
Labels give information about the location, activity state, etc... |
LabelType |
LabelTypes are top level categories for a small ontology present within PID |
LabelValue |
A label Value is a category of a label type pseudoo-ontology |
LocationLabel |
Information about the location of the molecule. |
Model |
The main content of PID. |
Molecule |
Generic type of molecule, this class represent a structured sequence of
atoms. |
MoleculePart |
If the molecule is part of a bigger molecule, in some occasion, it is
described within that class. |
Name |
Reference to a name for an entity. |
NegativeCondition |
A negative condition influencing a pathway |
Ontology |
Ontologies behind PID |
Output |
|
Pathway |
A pathway from PID |
PathwayComponent |
A step in a pathway, pointing to an interaction. |
PID |
An Object mimicking the XML coming from PID |
PositiveCondition |
A positive condition influencing an interaction |
PreferredSymbolName |
Set of symbols corresponding to the most used by the community. |
Protein |
Type of molecule, mostly used within PID |
PTMExpression |
A Post-Translational Modification
(http://en.wikipedia.org/wiki/Posttranslational_modification) expression: A
set of PTMs for this molecule. |
PTMTerm |
A PTM for the current molecule. |
RNA |
Type of molecule, storing the information about protein structures among
other things. |
UniprotName |
Reference to a uniprot accession string |