Serialized Form


Package pid

Class pid.Abstraction extends java.lang.Object implements Serializable

Serialized Fields

pathway_idref

int pathway_idref

pathway_name

java.lang.String pathway_name

external_pathway_id

java.lang.String external_pathway_id

Class pid.ActivityStateLabel extends Label implements Serializable

Class pid.Agent extends InteractionComponent implements Serializable

Class pid.AliasName extends Name implements Serializable

Class pid.ChemicalAbstractName extends Name implements Serializable

Class pid.Complex extends Molecule implements Serializable

Class pid.ComplexComponent extends java.lang.Object implements Serializable

Serialized Fields

molecule_idref

int molecule_idref

labels

java.util.ArrayList<E> labels

ptmExpression

PTMExpression ptmExpression

Class pid.Compound extends Molecule implements Serializable

Class pid.Condition extends java.lang.Object implements Serializable

Serialized Fields

condition_type

java.lang.String condition_type

Class pid.EntrezGeneName extends Name implements Serializable

Class pid.FamilyMember extends java.lang.Object implements Serializable

Serialized Fields

member_molecule_idref

int member_molecule_idref

labels

java.util.ArrayList<E> labels

ptmExpression

PTMExpression ptmExpression

Class pid.FunctionLabel extends Label implements Serializable

Class pid.GeneOntologyName extends Name implements Serializable

Class pid.Inhibitor extends InteractionComponent implements Serializable

Class pid.Input extends InteractionComponent implements Serializable

Class pid.Interaction extends java.lang.Object implements Serializable

Serialized Fields

id

java.lang.String id

interactionType

java.lang.String interactionType

abstraction

Abstraction abstraction

source

java.lang.String source

conditions

java.util.ArrayList<E> conditions

evidences

java.util.ArrayList<E> evidences

references

java.util.ArrayList<E> references

components

java.util.ArrayList<E> components

Class pid.InteractionComponent extends java.lang.Object implements Serializable

Serialized Fields

ptmExpression

PTMExpression ptmExpression

labels

java.util.ArrayList<E> labels

molecule_idref

int molecule_idref

Class pid.Label extends java.lang.Object implements Serializable

Serialized Fields

value

java.lang.String value

Class pid.LabelType extends java.lang.Object implements Serializable

Serialized Fields

labelValues

java.util.ArrayList<E> labelValues

name

java.lang.String name

id

int id

Class pid.LabelValue extends java.lang.Object implements Serializable

Serialized Fields

name

java.lang.String name

id

int id

parent_idref

java.lang.String parent_idref

go

java.lang.String go

Class pid.LocationLabel extends Label implements Serializable

Class pid.Model extends java.lang.Object implements Serializable

Serialized Fields

molecules

java.util.ArrayList<E> molecules

interactions

java.util.ArrayList<E> interactions

pathways

java.util.ArrayList<E> pathways

Class pid.Molecule extends java.lang.Object implements Serializable

Serialized Fields

id

int id

names

java.util.ArrayList<E> names

complexComponents

java.util.ArrayList<E> complexComponents

familyMembers

java.util.ArrayList<E> familyMembers

parts

java.util.ArrayList<E> parts

Class pid.MoleculePart extends java.lang.Object implements Serializable

Serialized Fields

whole_molecule_idref

int whole_molecule_idref

part_molecule_idref

int part_molecule_idref

start

int start

end

int end

Class pid.Name extends java.lang.Object implements Serializable

Serialized Fields

abbreviation

java.lang.String abbreviation

fullName

java.lang.String fullName

value

java.lang.String value

Class pid.NegativeCondition extends Condition implements Serializable

Class pid.Ontology extends java.lang.Object implements Serializable

Serialized Fields

labelTypes

java.util.ArrayList<E> labelTypes

Class pid.Output extends InteractionComponent implements Serializable

Class pid.Pathway extends java.lang.Object implements Serializable

Serialized Fields

id

int id

isSubnet

boolean isSubnet

organism

java.lang.String organism

longName

java.lang.String longName

shortName

java.lang.String shortName

source

java.lang.String source

curators

java.util.ArrayList<E> curators

reviewers

java.util.ArrayList<E> reviewers

pathwayComponents

java.util.ArrayList<E> pathwayComponents

Class pid.PathwayComponent extends java.lang.Object implements Serializable

Serialized Fields

interaction_idref

java.lang.String interaction_idref

Class pid.PID extends java.lang.Object implements Serializable

Serialized Fields

created

java.lang.String created

ontology

Ontology ontology

model

Model model

Class pid.PositiveCondition extends Condition implements Serializable

Class pid.PreferredSymbolName extends Name implements Serializable

Class pid.Protein extends Molecule implements Serializable

Class pid.PTMExpression extends java.lang.Object implements Serializable

Serialized Fields

ptmTerms

java.util.ArrayList<E> ptmTerms

Class pid.PTMTerm extends java.lang.Object implements Serializable

Serialized Fields

protein

java.lang.String protein

position

int position

aminoAcid

java.lang.String aminoAcid

modification

java.lang.String modification

Class pid.RNA extends Molecule implements Serializable

Class pid.UniprotName extends Name implements Serializable