pid
Class Pathway
java.lang.Object
pid.Pathway
- All Implemented Interfaces:
- java.io.Serializable
public class Pathway
- extends java.lang.Object
- implements java.io.Serializable
A pathway from PID
- Author:
- Samuel Croset
- See Also:
- Serialized Form
Constructor Summary |
Pathway()
Only constructor, initialise the arrays. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
id
private int id
isSubnet
private boolean isSubnet
organism
private java.lang.String organism
longName
private java.lang.String longName
shortName
private java.lang.String shortName
source
private java.lang.String source
curators
private java.util.ArrayList<java.lang.String> curators
reviewers
private java.util.ArrayList<java.lang.String> reviewers
pathwayComponents
private java.util.ArrayList<PathwayComponent> pathwayComponents
Pathway
public Pathway()
- Only constructor, initialise the arrays.
getId
public int getId()
- Returns:
- the id of the pathway
setId
public void setId(int id)
isSubnet
public boolean isSubnet()
- Returns:
- whether the current pathway is a subnet of another pathway or
not.
setSubnet
public void setSubnet(boolean isSubnet)
getOrganism
public java.lang.String getOrganism()
- Returns:
- the organism of the pathway.
setOrganism
public void setOrganism(java.lang.String organism)
getLongName
public java.lang.String getLongName()
- Returns:
- the human readable form of the pathway name.
setLongName
public void setLongName(java.lang.String longName)
getShortName
public java.lang.String getShortName()
- Returns:
- the name of the pathway in a more computer oriented way.
setShortName
public void setShortName(java.lang.String shortName)
setSource
public void setSource(java.lang.String source)
getSource
public java.lang.String getSource()
- Returns:
- the original source holding the data.
setCurators
public void setCurators(java.util.ArrayList<java.lang.String> curators)
getCurators
public java.util.ArrayList<java.lang.String> getCurators()
- Returns:
- the curators of the pathway.
setReviewers
public void setReviewers(java.util.ArrayList<java.lang.String> reviewers)
getReviewers
public java.util.ArrayList<java.lang.String> getReviewers()
- Returns:
- the list of reviewer for the pathway.
setPathwayComponents
public void setPathwayComponents(java.util.ArrayList<PathwayComponent> pathwayComponents)
getPathwayComponents
public java.util.ArrayList<PathwayComponent> getPathwayComponents()
- Returns:
- the list of steps within the pathway, so called pathway
components.