Uses of Package
pid

Packages that use pid
manipulator   
pid   
test   
 

Classes in pid used by manipulator
Model
          The main content of PID.
PID
          An Object mimicking the XML coming from PID
 

Classes in pid used by pid
Abstraction
          A link to another pathway from a pathway.
ComplexComponent
          A Complex Component is of of the building block composing a complex molecule.
Condition
          A generic condition, influencing an interaction
FamilyMember
          A molecule member of a family (higher order).
Interaction
          Interaction between two entities
InteractionComponent
          An entity interacting in an interaction.
Label
          Labels give information about the location, activity state, etc...
LabelType
          LabelTypes are top level categories for a small ontology present within PID
LabelValue
          A label Value is a category of a label type pseudoo-ontology
Model
          The main content of PID.
Molecule
          Generic type of molecule, this class represent a structured sequence of atoms.
MoleculePart
          If the molecule is part of a bigger molecule, in some occasion, it is described within that class.
Name
          Reference to a name for an entity.
Ontology
          Ontologies behind PID
Pathway
          A pathway from PID
PathwayComponent
          A step in a pathway, pointing to an interaction.
PreferredSymbolName
          Set of symbols corresponding to the most used by the community.
PTMExpression
          A Post-Translational Modification (http://en.wikipedia.org/wiki/Posttranslational_modification) expression: A set of PTMs for this molecule.
PTMTerm
          A PTM for the current molecule.
UniprotName
          Reference to a uniprot accession string
 

Classes in pid used by test
PID
          An Object mimicking the XML coming from PID