A B C D E F G H I J K L M N O P R S T U V W X Y _

S

scale(Instances) - Static method in class org.opentox.algorithm.dataprocessing.DataCleanUp
Scales the data producing a dataset whose values lie within [-1,1]
scale(String[], String) - Method in class org.opentox.util.libSVM.svm_scale
 
scaledFileName - Variable in class org.opentox.util.libSVM.svm_scale
 
search(String, String, String) - Method in class org.opentox.database.ModelsTable
 
search(String, String, String) - Method in class org.opentox.database.TaskTable
 
search(String, String, String) - Method in class org.opentox.database.UsersTable
 
search(String, String, String) - Method in interface org.opentox.interfaces.ITable
Performs a search in the table.
searchAlgorithm - Variable in class org.opentox.resource.ListModels
Database Query
searchQuery - Variable in class org.opentox.database.ModelsTable.JteratorImpl
 
selectFeatures() - Method in class org.opentox.algorithm.dataprocessing.InfoGain
 
selectFeatures() - Method in interface org.opentox.interfaces.IFeatureSelection
???
sentShutDownRequest - Static variable in class org.opentox.resource.ShutDownResource
 
serialVersionUID - Static variable in class org.opentox.algorithm.trainer.SvcTrainer
 
serialVersionUID - Static variable in class org.opentox.algorithm.trainer.SvmTrainer
 
serialVersionUID - Static variable in class org.opentox.client.opentoxClient
 
serialVersionUID - Static variable in class org.opentox.formatters.AlgorithmRdfFormatter
 
serialVersionUID - Static variable in class org.opentox.media.OpenToxMediaType
 
serialVersionUID - Static variable in class org.opentox.ontology.namespaces.AbsOntClass
 
serialVersionUID - Static variable in class org.opentox.ontology.namespaces.OTProperties
 
serialVersionUID - Static variable in class org.opentox.ontology.rdf.Dataset
 
serialVersionUID - Static variable in class org.opentox.ontology.rdf.Model
 
serialVersionUID - Static variable in class org.opentox.ontology.rdf.RDFHandler
 
serialVersionUID - Static variable in class org.opentox.OpenToxApplication
 
serialVersionUID - Static variable in class org.opentox.resource.Algorithm
 
serialVersionUID - Static variable in class org.opentox.resource.IndexResource
 
serialVersionUID - Static variable in class org.opentox.resource.ListAlgorithms
 
serialVersionUID - Static variable in class org.opentox.resource.ListModels
 
serialVersionUID - Static variable in class org.opentox.resource.ModelResource
 
serialVersionUID - Static variable in class org.opentox.resource.OTResource
version unique serial number.
serialVersionUID - Static variable in class org.opentox.util.converters.Converter
 
serialVersionUID - Static variable in class org.opentox.util.libSVM.svm_scale
 
serialVersionUID - Static variable in class org.opentox.util.libSVM.svm_train
 
Server - Class in org.opentox
 
Server() - Constructor for class org.opentox.Server
Private Constructor.
setAbout(String) - Method in class org.opentox.ontology.meta.AlgorithmMeta
 
setOfFeatures() - Method in class org.opentox.ontology.rdf.Dataset
Returns the set of features in the dataset.
setOfFeatures() - Method in class org.opentox.ontology.rdf.Model
Returns the set of all features in the Model (RDF representation) including dependent, independent and predicted ones.
setParameters(ArrayList<AlgorithmParameter>) - Method in class org.opentox.ontology.meta.AlgorithmMeta
 
SHA_1 - Static variable in class org.opentox.auth.DigestGenerator.DigestAlgorithm
Hash algorithms defined in the FIPS PUB 180-2.
SHA_256 - Static variable in class org.opentox.auth.DigestGenerator.DigestAlgorithm
Hash algorithms defined in the FIPS PUB 180-2.
SHA_384 - Static variable in class org.opentox.auth.DigestGenerator.DigestAlgorithm
Hash algorithms defined in the FIPS PUB 180-2.
SHA_512 - Static variable in class org.opentox.auth.DigestGenerator.DigestAlgorithm
Hash algorithms defined in the FIPS PUB 180-2.
shutdown() - Method in interface org.opentox.interfaces.IServer
Gracefully terminates the server!
shutdown() - Method in class org.opentox.Server
Gracefully terminates the server!
ShutDownResource - Class in org.opentox.resource
 
ShutDownResource() - Constructor for class org.opentox.resource.ShutDownResource
 
SingleTarget - Static variable in class org.opentox.ontology.namespaces.AlgorithmTypes
 
SIZE - Variable in class org.opentox.algorithm.AlgorithmEnum.IteratorImpl
 
source - Variable in class org.opentox.ontology.meta.DCMeta
 
statisticsSupported(AlgorithmEnum) - Static method in class org.opentox.algorithm.reporting.AlgorithmReporter
 
statisticsSupported - Static variable in class org.opentox.ontology.namespaces.OTProperties
 
stmt - Variable in class org.opentox.database.ModelsTable.JteratorImpl
 
stringXSDtypes() - Static method in class org.opentox.ontology.rdf.Dataset
The set of XSD data types that should be cast as string.
subject - Variable in class org.opentox.ontology.meta.DCMeta
 
Supervised - Static variable in class org.opentox.ontology.namespaces.AlgorithmTypes
 
svcAlgorithmURI - Static variable in class org.opentox.resource.OTResource.URIs
 
SvcPredictor - Class in org.opentox.prediction
 
SvcPredictor() - Constructor for class org.opentox.prediction.SvcPredictor
 
SvcTrainer - Class in org.opentox.algorithm.trainer
 
SvcTrainer(Form, ServerResource) - Constructor for class org.opentox.algorithm.trainer.SvcTrainer
Constructor of the trainer.
svm_predict - Class in org.opentox.util.libSVM
Making prediction using an existing SVM model and a test file.
svm_predict() - Constructor for class org.opentox.util.libSVM.svm_predict
 
svm_scale - Class in org.opentox.util.libSVM
This class is used to scale the input data.
svm_scale() - Constructor for class org.opentox.util.libSVM.svm_scale
 
svm_train - Class in org.opentox.util.libSVM
Training of SVM classification and regression models.
svm_train() - Constructor for class org.opentox.util.libSVM.svm_train
 
svmAlgorithmURI - Static variable in class org.opentox.resource.OTResource.URIs
URI for Support vector machine regression algorithm.
SvmParameters - Class in org.opentox.algorithm
TODO: Move this class.
SvmParameters() - Constructor for class org.opentox.algorithm.SvmParameters
 
SvmPredictor - Class in org.opentox.prediction
 
SvmPredictor() - Constructor for class org.opentox.prediction.SvmPredictor
 
SvmTrainer - Class in org.opentox.algorithm.trainer
Trainer for Support Vector Machine Regression Models.
SvmTrainer(Form, ServerResource) - Constructor for class org.opentox.algorithm.trainer.SvmTrainer
Constructor of the trainer.

A B C D E F G H I J K L M N O P R S T U V W X Y _