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scale(Instances)
- Static method in class org.opentox.algorithm.dataprocessing.
DataCleanUp
Scales the data producing a dataset whose values lie within [-1,1]
scale(String[], String)
- Method in class org.opentox.util.libSVM.
svm_scale
scaledFileName
- Variable in class org.opentox.util.libSVM.
svm_scale
search(String, String, String)
- Method in class org.opentox.database.
ModelsTable
search(String, String, String)
- Method in class org.opentox.database.
TaskTable
search(String, String, String)
- Method in class org.opentox.database.
UsersTable
search(String, String, String)
- Method in interface org.opentox.interfaces.
ITable
Performs a search in the table.
searchAlgorithm
- Variable in class org.opentox.resource.
ListModels
Database Query
searchQuery
- Variable in class org.opentox.database.
ModelsTable.JteratorImpl
selectFeatures()
- Method in class org.opentox.algorithm.dataprocessing.
InfoGain
selectFeatures()
- Method in interface org.opentox.interfaces.
IFeatureSelection
???
sentShutDownRequest
- Static variable in class org.opentox.resource.
ShutDownResource
serialVersionUID
- Static variable in class org.opentox.algorithm.trainer.
SvcTrainer
serialVersionUID
- Static variable in class org.opentox.algorithm.trainer.
SvmTrainer
serialVersionUID
- Static variable in class org.opentox.client.
opentoxClient
serialVersionUID
- Static variable in class org.opentox.formatters.
AlgorithmRdfFormatter
serialVersionUID
- Static variable in class org.opentox.media.
OpenToxMediaType
serialVersionUID
- Static variable in class org.opentox.ontology.namespaces.
AbsOntClass
serialVersionUID
- Static variable in class org.opentox.ontology.namespaces.
OTProperties
serialVersionUID
- Static variable in class org.opentox.ontology.rdf.
Dataset
serialVersionUID
- Static variable in class org.opentox.ontology.rdf.
Model
serialVersionUID
- Static variable in class org.opentox.ontology.rdf.
RDFHandler
serialVersionUID
- Static variable in class org.opentox.
OpenToxApplication
serialVersionUID
- Static variable in class org.opentox.resource.
Algorithm
serialVersionUID
- Static variable in class org.opentox.resource.
IndexResource
serialVersionUID
- Static variable in class org.opentox.resource.
ListAlgorithms
serialVersionUID
- Static variable in class org.opentox.resource.
ListModels
serialVersionUID
- Static variable in class org.opentox.resource.
ModelResource
serialVersionUID
- Static variable in class org.opentox.resource.
OTResource
version unique serial number.
serialVersionUID
- Static variable in class org.opentox.util.converters.
Converter
serialVersionUID
- Static variable in class org.opentox.util.libSVM.
svm_scale
serialVersionUID
- Static variable in class org.opentox.util.libSVM.
svm_train
Server
- Class in
org.opentox
Server()
- Constructor for class org.opentox.
Server
Private Constructor.
setAbout(String)
- Method in class org.opentox.ontology.meta.
AlgorithmMeta
setOfFeatures()
- Method in class org.opentox.ontology.rdf.
Dataset
Returns the set of features in the dataset.
setOfFeatures()
- Method in class org.opentox.ontology.rdf.
Model
Returns the set of all features in the Model (RDF representation) including dependent, independent and predicted ones.
setParameters(ArrayList<AlgorithmParameter>)
- Method in class org.opentox.ontology.meta.
AlgorithmMeta
SHA_1
- Static variable in class org.opentox.auth.
DigestGenerator.DigestAlgorithm
Hash algorithms defined in the FIPS PUB 180-2.
SHA_256
- Static variable in class org.opentox.auth.
DigestGenerator.DigestAlgorithm
Hash algorithms defined in the FIPS PUB 180-2.
SHA_384
- Static variable in class org.opentox.auth.
DigestGenerator.DigestAlgorithm
Hash algorithms defined in the FIPS PUB 180-2.
SHA_512
- Static variable in class org.opentox.auth.
DigestGenerator.DigestAlgorithm
Hash algorithms defined in the FIPS PUB 180-2.
shutdown()
- Method in interface org.opentox.interfaces.
IServer
Gracefully terminates the server!
shutdown()
- Method in class org.opentox.
Server
Gracefully terminates the server!
ShutDownResource
- Class in
org.opentox.resource
ShutDownResource()
- Constructor for class org.opentox.resource.
ShutDownResource
SingleTarget
- Static variable in class org.opentox.ontology.namespaces.
AlgorithmTypes
SIZE
- Variable in class org.opentox.algorithm.
AlgorithmEnum.IteratorImpl
source
- Variable in class org.opentox.ontology.meta.
DCMeta
statisticsSupported(AlgorithmEnum)
- Static method in class org.opentox.algorithm.reporting.
AlgorithmReporter
statisticsSupported
- Static variable in class org.opentox.ontology.namespaces.
OTProperties
stmt
- Variable in class org.opentox.database.
ModelsTable.JteratorImpl
stringXSDtypes()
- Static method in class org.opentox.ontology.rdf.
Dataset
The set of XSD data types that should be cast as string.
subject
- Variable in class org.opentox.ontology.meta.
DCMeta
Supervised
- Static variable in class org.opentox.ontology.namespaces.
AlgorithmTypes
svcAlgorithmURI
- Static variable in class org.opentox.resource.
OTResource.URIs
SvcPredictor
- Class in
org.opentox.prediction
SvcPredictor()
- Constructor for class org.opentox.prediction.
SvcPredictor
SvcTrainer
- Class in
org.opentox.algorithm.trainer
SvcTrainer(Form, ServerResource)
- Constructor for class org.opentox.algorithm.trainer.
SvcTrainer
Constructor of the trainer.
svm_predict
- Class in
org.opentox.util.libSVM
Making prediction using an existing SVM model and a test file.
svm_predict()
- Constructor for class org.opentox.util.libSVM.
svm_predict
svm_scale
- Class in
org.opentox.util.libSVM
This class is used to scale the input data.
svm_scale()
- Constructor for class org.opentox.util.libSVM.
svm_scale
svm_train
- Class in
org.opentox.util.libSVM
Training of SVM classification and regression models.
svm_train()
- Constructor for class org.opentox.util.libSVM.
svm_train
svmAlgorithmURI
- Static variable in class org.opentox.resource.
OTResource.URIs
URI for Support vector machine regression algorithm.
SvmParameters
- Class in
org.opentox.algorithm
TODO: Move this class.
SvmParameters()
- Constructor for class org.opentox.algorithm.
SvmParameters
SvmPredictor
- Class in
org.opentox.prediction
SvmPredictor()
- Constructor for class org.opentox.prediction.
SvmPredictor
SvmTrainer
- Class in
org.opentox.algorithm.trainer
Trainer for Support Vector Machine Regression Models.
SvmTrainer(Form, ServerResource)
- Constructor for class org.opentox.algorithm.trainer.
SvmTrainer
Constructor of the trainer.
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