A B C D E F G H I J K L M N O P R S T U V W X Y _

D

d - Variable in class org.opentox.algorithm.trainer.SvcTrainer
 
d - Variable in class org.opentox.algorithm.trainer.SvmTrainer
 
data - Variable in class org.opentox.algorithm.trainer.MlrTrainer
 
data - Variable in class org.opentox.ontology.meta.ModelMeta
Instances object corresponding to the URI of the dataset.
DATABASENAME - Static variable in interface org.opentox.interfaces.IDataBaseAccess
 
DataCleanUp - Class in org.opentox.algorithm.dataprocessing
 
DataCleanUp() - Constructor for class org.opentox.algorithm.dataprocessing.DataCleanUp
 
dataDir - Static variable in class org.opentox.resource.OTResource.Directories
Directory of data files.
DataEntry - Static variable in class org.opentox.ontology.namespaces.OTClass
 
dataEntry - Static variable in class org.opentox.ontology.namespaces.OTProperties
 
dataInstances - Variable in class org.opentox.algorithm.trainer.SvcTrainer
An Instances object used to store the data.
dataInstances - Variable in class org.opentox.algorithm.trainer.SvmTrainer
An Instances object used to store the data.
Dataset - Static variable in class org.opentox.ontology.namespaces.OTClass
 
Dataset - Class in org.opentox.ontology.rdf
 
Dataset(InputStream) - Constructor for class org.opentox.ontology.rdf.Dataset
Initializes a new Dataset object given an input stream which can either correspond to a file on the disk or some web resource.
Dataset(OntModel) - Constructor for class org.opentox.ontology.rdf.Dataset
 
Dataset(URI) - Constructor for class org.opentox.ontology.rdf.Dataset
Initializes a Dataset given a URI.
Dataset(URL) - Constructor for class org.opentox.ontology.rdf.Dataset
Initializes a Dataset object given a URL.
Dataset() - Constructor for class org.opentox.ontology.rdf.Dataset
Initialized a void Dataset object; invokes a call to the super-class constructor
dataseturi - Variable in class org.opentox.algorithm.trainer.AbstractTrainer
 
dataseturi - Variable in class org.opentox.ontology.meta.ModelMeta
URI of the dataset used to train the model.
dataType - Variable in class org.opentox.algorithm.AlgorithmParameter
Parameter datatype according to the XSD specifications.
date - Variable in class org.opentox.ontology.meta.DCMeta
 
DB_PASSWORD - Static variable in class org.opentox.database.InHouseDB
 
DB_URL - Static variable in interface org.opentox.interfaces.IDataBaseAccess
 
DB_USER - Static variable in class org.opentox.database.InHouseDB
 
dbcon - Static variable in class org.opentox.OpenToxApplication
Connection to the Models' database.
DCMeta - Class in org.opentox.ontology.meta
 
DCMeta() - Constructor for class org.opentox.ontology.meta.DCMeta
 
DEGREE - Static variable in class org.opentox.algorithm.ConstantParameters
 
DEGREE(int) - Static method in class org.opentox.algorithm.ConstantParameters
 
degree - Variable in class org.opentox.algorithm.SvmParameters
The degree of the polynomial kernel (when used).
degree - Variable in class org.opentox.algorithm.trainer.SvcTrainer
The degree of the polynomial kernel (when used).
delete() - Method in interface org.opentox.interfaces.IRemovableResource
 
delete() - Method in class org.opentox.resource.ModelResource
 
dependentVariables - Static variable in class org.opentox.ontology.namespaces.OTProperties
 
description - Variable in class org.opentox.ontology.meta.DCMeta
 
DigestGenerator - Class in org.opentox.auth
Factory for the generation of SHA and MD5 digests.
DigestGenerator() - Constructor for class org.opentox.auth.DigestGenerator
 
DigestGenerator.DigestAlgorithm - Class in org.opentox.auth
Set of Available Digest Algorithm.
DigestGenerator.DigestAlgorithm() - Constructor for class org.opentox.auth.DigestGenerator.DigestAlgorithm
 
do_cross_validation() - Method in class org.opentox.util.libSVM.svm_train
 
doInit() - Method in interface org.opentox.interfaces.IProvidesHttpAccess
 
doInit() - Method in class org.opentox.resource.Algorithm
Initialize the resource.
doInit() - Method in class org.opentox.resource.IndexResource
Initializes the Resource
doInit() - Method in class org.opentox.resource.ListAlgorithms
Initialize the resource.
doInit() - Method in class org.opentox.resource.ListModels
Initializes the resource.
doInit() - Method in class org.opentox.resource.ListTasks
 
doInit() - Method in class org.opentox.resource.ModelInfoResource
Initialized the resource.
doInit() - Method in class org.opentox.resource.ModelResource
Initializes the resource.
doInit() - Method in class org.opentox.resource.ShutDownResource
 
doInit() - Method in class org.opentox.resource.TaskResource
 
doInit() - Method in class org.opentox.resource.TestResource
 
domainName - Static variable in class org.opentox.resource.OTResource.URIs
The domain name assigned to the IP of the server.
DRIVER - Static variable in interface org.opentox.interfaces.IDataBaseAccess
 

A B C D E F G H I J K L M N O P R S T U V W X Y _