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D
d
- Variable in class org.opentox.algorithm.trainer.
SvcTrainer
d
- Variable in class org.opentox.algorithm.trainer.
SvmTrainer
data
- Variable in class org.opentox.algorithm.trainer.
MlrTrainer
data
- Variable in class org.opentox.ontology.meta.
ModelMeta
Instances object corresponding to the URI of the dataset.
DATABASENAME
- Static variable in interface org.opentox.interfaces.
IDataBaseAccess
DataCleanUp
- Class in
org.opentox.algorithm.dataprocessing
DataCleanUp()
- Constructor for class org.opentox.algorithm.dataprocessing.
DataCleanUp
dataDir
- Static variable in class org.opentox.resource.
OTResource.Directories
Directory of data files.
DataEntry
- Static variable in class org.opentox.ontology.namespaces.
OTClass
dataEntry
- Static variable in class org.opentox.ontology.namespaces.
OTProperties
dataInstances
- Variable in class org.opentox.algorithm.trainer.
SvcTrainer
An Instances object used to store the data.
dataInstances
- Variable in class org.opentox.algorithm.trainer.
SvmTrainer
An Instances object used to store the data.
Dataset
- Static variable in class org.opentox.ontology.namespaces.
OTClass
Dataset
- Class in
org.opentox.ontology.rdf
Dataset(InputStream)
- Constructor for class org.opentox.ontology.rdf.
Dataset
Initializes a new Dataset object given an input stream which can either correspond to a file on the disk or some web resource.
Dataset(OntModel)
- Constructor for class org.opentox.ontology.rdf.
Dataset
Dataset(URI)
- Constructor for class org.opentox.ontology.rdf.
Dataset
Initializes a Dataset given a URI.
Dataset(URL)
- Constructor for class org.opentox.ontology.rdf.
Dataset
Initializes a Dataset object given a URL.
Dataset()
- Constructor for class org.opentox.ontology.rdf.
Dataset
Initialized a void Dataset object; invokes a call to the super-class constructor
dataseturi
- Variable in class org.opentox.algorithm.trainer.
AbstractTrainer
dataseturi
- Variable in class org.opentox.ontology.meta.
ModelMeta
URI of the dataset used to train the model.
dataType
- Variable in class org.opentox.algorithm.
AlgorithmParameter
Parameter datatype according to the
XSD
specifications.
date
- Variable in class org.opentox.ontology.meta.
DCMeta
DB_PASSWORD
- Static variable in class org.opentox.database.
InHouseDB
DB_URL
- Static variable in interface org.opentox.interfaces.
IDataBaseAccess
DB_USER
- Static variable in class org.opentox.database.
InHouseDB
dbcon
- Static variable in class org.opentox.
OpenToxApplication
Connection to the Models' database.
DCMeta
- Class in
org.opentox.ontology.meta
DCMeta()
- Constructor for class org.opentox.ontology.meta.
DCMeta
DEGREE
- Static variable in class org.opentox.algorithm.
ConstantParameters
DEGREE(int)
- Static method in class org.opentox.algorithm.
ConstantParameters
degree
- Variable in class org.opentox.algorithm.
SvmParameters
The degree of the polynomial kernel (when used).
degree
- Variable in class org.opentox.algorithm.trainer.
SvcTrainer
The degree of the polynomial kernel (when used).
delete()
- Method in interface org.opentox.interfaces.
IRemovableResource
delete()
- Method in class org.opentox.resource.
ModelResource
dependentVariables
- Static variable in class org.opentox.ontology.namespaces.
OTProperties
description
- Variable in class org.opentox.ontology.meta.
DCMeta
DigestGenerator
- Class in
org.opentox.auth
Factory for the generation of SHA and MD5 digests.
DigestGenerator()
- Constructor for class org.opentox.auth.
DigestGenerator
DigestGenerator.DigestAlgorithm
- Class in
org.opentox.auth
Set of Available Digest Algorithm.
DigestGenerator.DigestAlgorithm()
- Constructor for class org.opentox.auth.
DigestGenerator.DigestAlgorithm
do_cross_validation()
- Method in class org.opentox.util.libSVM.
svm_train
doInit()
- Method in interface org.opentox.interfaces.
IProvidesHttpAccess
doInit()
- Method in class org.opentox.resource.
Algorithm
Initialize the resource.
doInit()
- Method in class org.opentox.resource.
IndexResource
Initializes the Resource
doInit()
- Method in class org.opentox.resource.
ListAlgorithms
Initialize the resource.
doInit()
- Method in class org.opentox.resource.
ListModels
Initializes the resource.
doInit()
- Method in class org.opentox.resource.
ListTasks
doInit()
- Method in class org.opentox.resource.
ModelInfoResource
Initialized the resource.
doInit()
- Method in class org.opentox.resource.
ModelResource
Initializes the resource.
doInit()
- Method in class org.opentox.resource.
ShutDownResource
doInit()
- Method in class org.opentox.resource.
TaskResource
doInit()
- Method in class org.opentox.resource.
TestResource
domainName
- Static variable in class org.opentox.resource.
OTResource.URIs
The domain name assigned to the IP of the server.
DRIVER
- Static variable in interface org.opentox.interfaces.
IDataBaseAccess
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