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Carl
Boettiger
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rfishbase: exploring, manipulating and visualizing FishBase data from R.
(2012)
Boettiger, Lang, Wainwright.
Wiley Blackwell (Blackwell Publishing).
Journal of fish biology
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Modeling stabilizing selection: Expanding the Ornstein-Uhlenbeck model of adaptive evolution
(2012)
Wiley Blackwell (Blackwell Publishing).
Evolution
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Early warning signals and the prosecutor's fallacy.
(2012)
Boettiger, Hastings.
The Royal Society.
Proceedings. Biological sciences / The Royal Society
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Fluctuation domains in adaptive evolution.
(2010)
Boettiger, Dushoff, Weitz.
Elsevier.
Theoretical population biology
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Treebase: an R package for discovery, access and manipulation of online phylogenies
(2012)
Boettiger, Temple Lang.
Wiley Blackwell (Blackwell Publishing).
Methods in Ecology and Evolution
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Is your phylogeny informative? Measuring the power of comparative methods.
(2012)
Boettiger, Coop, Ralph.
Wiley Blackwell (Blackwell Publishing).
Evolution; international journal of organic evolution
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Quantifying limits to detection of early warning for critical transitions.
(2012)
Boettiger, Hastings.
The Royal Society.
Journal of the Royal Society, Interface / the Royal Society
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Tipping points: From patterns to predictions.
(2013)
Boettiger, Hastings.
Nature Publishing Group.
Nature
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The Shape, Multiplicity, and Evolution of Superclusters in ΛCDM Cosmology
(2006)
Wray, Bahcall, Bode et al..
IOP Publishing.
ApJ
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dataset
Data from: Is your phylogeny informative? Measuring the power of comparative methods
(2012)
Dryad Digital Repository.
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Regime shifts in ecology and evolution (PhD Dissertation)
(2012)
Figshare.
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Ensemble Behavior from Individual Dynamics in Multispecies Forest Populations (Senior Thesis)
(2013)
Figshare.
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Lab Notebook, 2012
(2013)
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Data from: Fluctuation domains in adaptive evolution
(2012)
Dryad Digital Repository.
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Adaptive Dynamics: Branching Phenomena and the Canonical Equation (Junior Paper)
(2013)
Figshare.
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Clonal Interference Models in Population Genetics (Junior Paper)
(2013)
Figshare.
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Stochastic impediments to biological diversification (IIASA Application)
(2013)
Figshare.
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Management for an uncertain world: robust decision theory in face of regime shifts (NSF Biology Postdoc Application)
(2013)
Figshare.
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slides
Is your phylogeny informative?
Slideshare.
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Open Science
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Scioslides
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A general model of continuous character evolution
Slideshare.
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Reading the Secrets of Biological Fluctuations
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Inferring Adaptive Landscapes from Phylogenetic Trees
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A new phylogenetic comparative method: detecting niches and transitions with continuous characters
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Detecting evolutionary regime shifts with comparative phylogenetics
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IIASA Progress Report 2
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Iiasa final
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Limits to Detection for Early Warning Signals of Population Collapse
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ESA 2012 talk
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R interface to TreeBASE
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software
knitcitations
(2012)
Generate citations for knitr markdown and html files
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treeBASE
(2011)
An R interface to the treeBASE API (now on CRAN)
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pdg_control
(2011)
Pretty Darn Good Control: applications in optimal control
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labnotebook
(2012)
Source code and version history for my online lab notebook
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rfishbase
(2011)
an R interface to the fishbase.org database (now on CRAN)
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Comparative-Phylogenetics
(2010)
Research and Methods Development in Comparative Phylogenetics
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socialR
(2010)
functions for making R interact with social media
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AdaptiveDynamics
(2010)
Individual based simulations of adaptive dynamics
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earlywarning
(2012)
Methods for detecting early warning signals of critical transitions
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cboettig.github.com
(2012)
Carl Boettiger's projects on Github
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structured-populations
(2010)
Stochastic Population Dynamics in Ecology with Age and Stage Structure
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nonparametric-bayes
(2012)
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pmc
(2011)
Phylogenetic Monte Carlo: Quantifying Uncertainty in Phylogenetic Methods (now on CRAN)
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communityPhylo
(2011)
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warningsignals
(2011)
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adg
(2011)
algorithms discussion group code
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wrightscape
(2010)
Infer adaptive landscapes from phylogenetic trees
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populationdynamics
(2012)
Tools to simulate various population dynamics models in ecology
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sandbox
(2010)
miscellaneous scripts and scratchpads
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fluctuationDomains
(2011)
Code for "Fluctuation Domains in Adaptive Evolution", published in TPB
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mcmcTools
(2011)
tools for Markov Chain Monte Carlo in R
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multiple_uncertainty
(2012)
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HMMt
(2013)
R package for Hidden Markov Models with t emissions
mendeley
(2013)
A simple ruby wrapper for the mendeley api
webpage
Welcome to my Lab Notebook - Reloaded
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