Download simucell Free Java Code

.gitignore//  w ww.  j  a  va2 s.  com
README.txt
documentation/HTML/css/documentation.css
documentation/HTML/microenv.html
documentation/HTML/polarized.html
documentation/documentation.docx
license.txt
saved_data/microenv.m
saved_data/polarized.m
saved_data/simucellTestSimple.m
src/core/Colors.m
src/core/Marker.m
src/core/Marker_Operation_Queue.m
src/core/Overlap_Specification.m
src/core/Parameter.m
src/core/SimuCell_CellArtifact_Operation.m
src/core/SimuCell_Class_Type.m
src/core/SimuCell_Compositing_Model.m
src/core/SimuCell_DynamicProps.m
src/core/SimuCell_Engine_Notifier.m
src/core/SimuCell_ImageArtifact_Operation.m
src/core/SimuCell_Marker_Operation.m
src/core/SimuCell_Model.m
src/core/SimuCell_Object.m
src/core/SimuCell_Object_Model.m
src/core/SimuCell_Placement_Model.m
src/core/Subpopulation.m
src/core/calculate_color_groups.m
src/core/dependancy_resolution.m
src/core/merge_cell_intensities.m
src/core/overlap_check.m
src/core/simucell_engine.m
src/data/slml/endosome.mat
src/data/slml/endosome.xml
src/data/slml/giantin.mat
src/data/slml/giantin.xml
src/data/slml/gpp130.mat
src/data/slml/gpp130.xml
src/data/slml/lysosome.mat
src/data/slml/lysosome.xml
src/data/slml/mitochondrion.mat
src/data/slml/mitochondrion.xml
src/data/slml/nucleolus.mat
src/data/slml/nucleolus.xml
src/generate_doc.m
src/gui/StructDlg.m
src/gui/define_artifact.fig
src/gui/define_artifact.m
src/gui/define_cell_placement.fig
src/gui/define_cell_placement.m
src/gui/define_compositing.fig
src/gui/define_compositing.m
src/gui/define_marker.fig
src/gui/define_marker.m
src/gui/define_placement.fig
src/gui/define_placement.m
src/gui/define_shape.fig
src/gui/define_shape.m
src/gui/generate_script_from_simucell.m
src/gui/get_screen_size.m
src/gui/header.png
src/gui/saveObjectFromParameters.m
src/gui/setParametersPanel.m
src/gui/simucellGUI.fig
src/gui/simucellGUI.m
src/gui/struct2str.m
src/gui/struct_mfile_reference.m
src/plugins/.Centered_nucleus_model.m.swp
src/plugins/cell_artifacts/Cell_Staining_Artifacts.m
src/plugins/cell_artifacts/Out_Of_Focus_Cells.m
src/plugins/composite/Default_Compositing.m
src/plugins/image_artifacts/Add_Basal_Brightness.m
src/plugins/image_artifacts/Linear_Image_Gradient.m
src/plugins/image_artifacts/Radial_Image_Gradient.m
src/plugins/markers/Angular_Marker_Gradient.m
src/plugins/markers/Cell_Density_Dependant_Marker_Level.m
src/plugins/markers/Constant_Dependant_Marker_Level.m
src/plugins/markers/Constant_Marker_Level.m
src/plugins/markers/Distance_To_Edge_Marker_Gradient.m
src/plugins/markers/Distance_To_Shape_Marker_Gradient.m
src/plugins/markers/Linear_Marker_Gradient.m
src/plugins/markers/Locally_Dependant_Marker_Level.m
src/plugins/markers/Microenvironmental_Marker_Level.m
src/plugins/markers/Perlin_Texture.m
src/plugins/markers/Rescale_Marker_Levels.m
src/plugins/markers/Turbulent_Texture.m
src/plugins/placement/Clustered_Placement.m
src/plugins/placement/Nearby_Placement.m
src/plugins/placement/Random_Placement.m
src/plugins/shape/cytoplasm/Centered_Cytoplasm_Model.m
src/plugins/shape/cytoplasm/Cytoplasm_Model.m
src/plugins/shape/cytoplasm/Fluid_Shape.m
src/plugins/shape/nucleus/Centered_Nucleus_Model.m
src/plugins/shape/nucleus/Nucleus_Model.m
src/plugins/shape/nucleus/SLML_Nucleus_Model.m
src/plugins/shape/other/Lipid_Droplet_Model.m
src/plugins/shape/other/Microtubule_Fibre_Model.m
src/simucell.m
src/test/test_script.m
src/utils/discrete_prob.m
src/utils/elliptical_shape.m
src/utils/getAllFiles.m
src/utils/line_points.m
src/utils/removeFromCellArray.m
src/utils/slml/getCellMembraneModelDelimiters.m
src/utils/slml/getFileExtension.m
src/utils/slml/getFileName.m
src/utils/slml/getNuclearModelDelimiters.m
src/utils/slml/getProteinModelDelimiters.m
src/utils/slml/hasTag.m
src/utils/slml/isMatFile.m
src/utils/slml/isSlmlInstanceValid.m
src/utils/slml/isaFile.m
src/utils/slml/isaLinux.m
src/utils/slml/ml_addrow.m
src/utils/slml/ml_boundbox.m
src/utils/slml/ml_bwmajorangle.m
src/utils/slml/ml_bwmoment.m
src/utils/slml/ml_calcobjcof.m
src/utils/slml/ml_celldistcode.m
src/utils/slml/ml_comfun.m
src/utils/slml/ml_crd2img.m
src/utils/slml/ml_edgecenter.m
src/utils/slml/ml_evalfun.m
src/utils/slml/ml_evallogistic.m
src/utils/slml/ml_feat2sp.m
src/utils/slml/ml_findobjs.m
src/utils/slml/ml_gaussimg.m
src/utils/slml/ml_gaussobj.m
src/utils/slml/ml_gencellcomp.m
src/utils/slml/ml_gencellshape.m
src/utils/slml/ml_genprotimg.m
src/utils/slml/ml_genshape.m
src/utils/slml/ml_getinvfun.m
src/utils/slml/ml_getlinept.m
src/utils/slml/ml_getlinept2.m
src/utils/slml/ml_getlinept_mex.mexa64
src/utils/slml/ml_getlinept_mex.mexglx
src/utils/slml/ml_getlinept_mex.mexmac
src/utils/slml/ml_getvarnum.m
src/utils/slml/ml_imaddobj2.m
src/utils/slml/ml_imcoords.m
src/utils/slml/ml_imgptspixel.m
src/utils/slml/ml_initparam.m
src/utils/slml/ml_invpcatrans.m
src/utils/slml/ml_iscomposite.m
src/utils/slml/ml_mappos.m
src/utils/slml/ml_mnornd.m
src/utils/slml/ml_moldshape.m
src/utils/slml/ml_mult2.m
src/utils/slml/ml_mxp2img.m
src/utils/slml/ml_mxp2mxs.m
src/utils/slml/ml_mxs2crd.m
src/utils/slml/ml_mxs2img.m
src/utils/slml/ml_normangle.m
src/utils/slml/ml_obj2img.m
src/utils/slml/ml_objinimg.m
src/utils/slml/ml_objrecrange.m
src/utils/slml/ml_objs2img.m
src/utils/slml/ml_parsecell.m
src/utils/slml/ml_rnd.m
src/utils/slml/ml_shiftdist.m
src/utils/slml/ml_showpts_2d.m
src/utils/slml/ml_sqr.m
src/utils/slml/ml_wquantile.m
src/utils/slml/model2cell.m
src/utils/slml/model2img.m
src/utils/slml/model2img2.m
src/utils/slml/model2nuclei.m
src/utils/slml/slml2img.m
src/utils/slml/slml2model.m
src/utils/slml/slml2struct.m
src/utils/slml/struct2vector.m
src/utils/slml/test_slml.m
src/utils/slml/xml_read.m
src/version.txt