List of usage examples for com.fasterxml.jackson.databind ObjectWriter writeValue
public void writeValue(Writer w, Object value) throws IOException, JsonGenerationException, JsonMappingException
From source file:org.usd.edu.btl.cli.ConvertBioextract.java
public void toBets(String inputS, String output) { ObjectMapper mapper = new ObjectMapper(); //create new Jackson Mapper File input = new File(inputS); BioExtV1 bioExtTool;/*from w w w . j av a 2s . c o m*/ try { //map input json files to iplant class bioExtTool = mapper.readValue(input, BioExtV1.class); BETSV1 bets = BioExtConverter.toBETS(bioExtTool); //pass the iplant tool spec, convert to bets ObjectWriter ow = mapper.writer().withDefaultPrettyPrinter(); String betsJson = ow.writeValueAsString(bets); //write Json as String if (output == null) { /*===============PRINT JSON TO CONSOLE AND FILES =================== */ System.out.println("************************************************\n" + "*********PRINTING OUT CONVERSION************\n" + "----------BioExtract --> Bets--------------\n" + "************************************************\n"); //print objects as Json using jackson System.out.println("=== BioExt TO BETS JSON === \n" + betsJson); } else { //write to files ow.writeValue(new File(output), betsJson); System.out.println(output + " has been created successfully"); System.exit(1); } } catch (Exception e) { System.out.println(e.getMessage()); } }
From source file:com.basistech.rosette.dm.json.plain.JsonTest.java
@Test public void versionCheckPasses() throws Exception { StringWriter writer = new StringWriter(); ObjectMapper mapper = AnnotatedDataModelModule.setupObjectMapper(new ObjectMapper()); ObjectWriter objectWriter = mapper.writer(); objectWriter.writeValue(writer, referenceTextOldEntities); mapper.readValue(writer.toString(), AnnotatedText.class); }
From source file:com.basistech.rosette.dm.json.plain.JsonTest.java
@Test public void versionInjected() throws Exception { StringWriter writer = new StringWriter(); ObjectMapper mapper = AnnotatedDataModelModule.setupObjectMapper(new ObjectMapper()); ObjectWriter objectWriter = mapper.writer(); objectWriter.writeValue(writer, referenceTextOldEntities); // to tell that the version is there, we read as a tree JsonNode tree = mapper.readTree(writer.toString()); String version = tree.get("version").asText(); assertEquals("1.1.0", version); }
From source file:eu.scape_project.cdx_creator.CDXCreationTask.java
public void createIndex() { FileInputStream fileInputStream = null; ArchiveReader reader = null;/*from w w w . j av a2 s .c o m*/ FileOutputStream outputStream = null; try { fileInputStream = new FileInputStream(archiveFile); reader = ArchiveReaderFactory.getReader(fileInputStream, this.archiveFileName); reader.setComputePayloadDigest(config.isCreatePayloadDigest()); List<CdxArchiveRecord> cdxArchRecords = new ArrayList<CdxArchiveRecord>(); while (reader.hasNext()) { ArchiveRecord archRec = (ArchiveRecord) reader.next(); CdxArchiveRecord cdxArchRec = CdxArchiveRecord.fromArchiveRecord(archRec); cdxArchRec.setContainerFileName(archiveFileName); cdxArchRec.setContainerLengthStr(Long.toString(archiveFile.length())); cdxArchRecords.add(cdxArchRec); } CsvMapper mapper = new CsvMapper(); mapper.setDateFormat(GMTGTechDateFormat); String cdxfileCsColumns = config.getCdxfileCsColumns(); List<String> cdxfileCsColumnsList = Arrays.asList(cdxfileCsColumns.split("\\s*,\\s*")); String[] cdxfileCsColumnsArray = cdxfileCsColumnsList.toArray(new String[cdxfileCsColumnsList.size()]); CsvSchema.Builder builder = CsvSchema.builder(); for (String cdxField : cdxfileCsColumnsList) { builder.addColumn(cdxField); } builder.setColumnSeparator(' '); CsvSchema schema = builder.build(); schema = schema.withoutQuoteChar(); SimpleFilterProvider filterProvider = new SimpleFilterProvider().addFilter("cdxfields", FilterExceptFilter.filterOutAllExcept(cdxfileCsColumnsArray)); ObjectWriter cdxArchRecordsWriter = mapper.writer(filterProvider).withSchema(schema); PrintStream pout = null; String outputPathStr = config.getOutputStr(); if (outputPathStr != null) { FileOutputStream fos; try { fos = new FileOutputStream(outputPathStr, true); pout = new PrintStream(fos); System.setOut(pout); } catch (FileNotFoundException ex) { LOG.error("File not found error", ex); } } System.out.println(" " + config.getCdxfileCsHeader()); cdxArchRecordsWriter.writeValue(System.out, cdxArchRecords); if (pout != null) { pout.close(); } } catch (FileNotFoundException ex) { LOG.error("File not found error", ex); } catch (IOException ex) { LOG.error("I/O Error", ex); } finally { try { if (fileInputStream != null) { fileInputStream.close(); } if (outputStream != null) { outputStream.close(); } } catch (IOException ex) { LOG.error("I/O Error", ex); } } }
From source file:com.basistech.rosette.dm.json.plain.JsonTest.java
@Test public void dataPlainString() throws Exception { CharSequence fancyCharSequence = new CharSequence() { private final String data = "Hello Polly"; public String getExtraneousInfo() { return "What is this doing here?"; }/*from w w w . ja va 2 s .co m*/ @Override public int length() { return data.length(); } @Override public char charAt(int index) { return data.charAt(index); } @Override public CharSequence subSequence(int start, int end) { return data.substring(start, end); } @Override public String toString() { return data; } }; AnnotatedText.Builder builder = new AnnotatedText.Builder(); builder.data(fancyCharSequence); AnnotatedText text = builder.build(); StringWriter writer = new StringWriter(); ObjectMapper mapper = AnnotatedDataModelModule.setupObjectMapper(new ObjectMapper()); ObjectWriter objectWriter = mapper.writer(); objectWriter.writeValue(writer, text); assertFalse(writer.toString().contains("What is this doing here")); assertTrue(writer.toString().contains("Hello Polly")); }
From source file:com.basistech.rosette.dm.json.plain.JsonTest.java
@Test public void roundTripOldEntities() throws Exception { StringWriter writer = new StringWriter(); ObjectMapper mapper = AnnotatedDataModelModule.setupObjectMapper(new ObjectMapper()); ObjectWriter objectWriter = mapper.writer(); objectWriter.writeValue(writer, referenceTextOldEntities); ObjectReader reader = mapper.readerFor(AnnotatedText.class); AnnotatedText read = reader.readValue(writer.toString()); ListAttribute<BaseNounPhrase> bnpList = read.getBaseNounPhrases(); assertNotNull(bnpList);/*from w ww. j a va 2s . c om*/ assertEquals(1, bnpList.size()); BaseNounPhrase bnp = bnpList.get(0); assertEquals(baseNounPhrase, bnp); ListAttribute<com.basistech.rosette.dm.EntityMention> emList = read.getEntityMentions(); assertNotNull(emList); assertEquals(1, emList.size()); com.basistech.rosette.dm.EntityMention em = emList.get(0); assertEquals(entityMention, em); ListAttribute<RelationshipMention> rmList = read.getRelationshipMentions(); assertNotNull(rmList); assertEquals(1, rmList.size()); RelationshipMention rm = rmList.get(0); assertEquals(relationshipMention, rm); ListAttribute<com.basistech.rosette.dm.ResolvedEntity> resolvedEntityList = read.getResolvedEntities(); assertNotNull(resolvedEntityList); assertEquals(1, resolvedEntityList.size()); com.basistech.rosette.dm.ResolvedEntity e = resolvedEntityList.get(0); assertEquals(resolvedEntity, e); ListAttribute<LanguageDetection> languageDetectionList = read.getLanguageDetectionRegions(); assertNotNull(languageDetectionList); assertEquals(1, languageDetectionList.size()); assertEquals(languageDetectionRegion, languageDetectionList.get(0)); assertEquals(languageDetection, read.getWholeTextLanguageDetection()); ListAttribute<ScriptRegion> scriptRegionList = read.getScriptRegions(); assertNotNull(scriptRegionList); assertEquals(1, scriptRegionList.size()); assertEquals(scriptRegion, scriptRegionList.get(0)); ListAttribute<Sentence> sentences = read.getSentences(); assertNotNull(sentences); assertEquals(sentence, sentences.get(0)); ListAttribute<Token> tokenList = read.getTokens(); assertNotNull(tokenList); assertEquals(1, tokenList.size()); assertEquals(token, tokenList.get(0)); ListAttribute<TranslatedData> dataTranslations = read.getTranslatedData(); assertEquals(germanTranslatedData, dataTranslations.get(0)); assertEquals(spanishTranslatedData, dataTranslations.get(1)); ListAttribute<TranslatedTokens> translatedTokens = read.getTranslatedTokens(); assertEquals(germanTranslation, translatedTokens.get(0)); assertEquals(spanishTranslation, translatedTokens.get(1)); assertEquals(categoryResult, read.getCategorizerResults().get(0)); assertEquals(sentimentResult, read.getSentimentResults().get(0)); assertEquals(topicResult, read.getTopicResults().get(0)); }
From source file:com.basistech.rosette.dm.json.plain.JsonTest.java
@Test public void roundTrip() throws Exception { StringWriter writer = new StringWriter(); ObjectMapper mapper = AnnotatedDataModelModule.setupObjectMapper(new ObjectMapper()); ObjectWriter objectWriter = mapper.writer(); objectWriter.writeValue(writer, referenceText); ObjectReader reader = mapper.readerFor(AnnotatedText.class); AnnotatedText read = reader.readValue(writer.toString()); ListAttribute<BaseNounPhrase> bnpList = read.getBaseNounPhrases(); assertNotNull(bnpList);/*from ww w . ja v a 2s . c om*/ assertEquals(1, bnpList.size()); BaseNounPhrase bnp = bnpList.get(0); assertEquals(baseNounPhrase, bnp); ListAttribute<Entity> entityList = read.getEntities(); assertNotNull(entityList); assertEquals(1, entityList.size()); Entity en = entityList.get(0); assertEquals(0.4, en.getSalience(), 0.0001); // just make sure the salience field works all around. assertEquals(entity, en); ListAttribute<RelationshipMention> rmList = read.getRelationshipMentions(); assertNotNull(rmList); assertEquals(1, rmList.size()); RelationshipMention rm = rmList.get(0); assertEquals(relationshipMention, rm); ListAttribute<LanguageDetection> languageDetectionList = read.getLanguageDetectionRegions(); assertNotNull(languageDetectionList); assertEquals(1, languageDetectionList.size()); assertEquals(languageDetectionRegion, languageDetectionList.get(0)); assertEquals(languageDetection, read.getWholeTextLanguageDetection()); ListAttribute<ScriptRegion> scriptRegionList = read.getScriptRegions(); assertNotNull(scriptRegionList); assertEquals(1, scriptRegionList.size()); assertEquals(scriptRegion, scriptRegionList.get(0)); ListAttribute<Sentence> sentences = read.getSentences(); assertNotNull(sentences); assertEquals(sentence, sentences.get(0)); ListAttribute<Token> tokenList = read.getTokens(); assertNotNull(tokenList); assertEquals(1, tokenList.size()); assertEquals(token, tokenList.get(0)); ListAttribute<TranslatedData> dataTranslations = read.getTranslatedData(); assertEquals(germanTranslatedData, dataTranslations.get(0)); assertEquals(spanishTranslatedData, dataTranslations.get(1)); ListAttribute<TranslatedTokens> translatedTokens = read.getTranslatedTokens(); assertEquals(germanTranslation, translatedTokens.get(0)); assertEquals(spanishTranslation, translatedTokens.get(1)); assertEquals(categoryResult, read.getCategorizerResults().get(0)); assertEquals(sentimentResult, read.getSentimentResults().get(0)); assertEquals("V", read.getDependencies().get(0).getRelationship()); assertEquals(-1, read.getDependencies().get(0).getGovernorTokenIndex()); assertEquals(0, read.getDependencies().get(0).getDependencyTokenIndex()); assertEquals(topicResult, read.getTopicResults().get(0)); Embeddings readEmbeddings = read.getEmbeddings(); assertEquals(embeddings, readEmbeddings); }
From source file:org.wrml.runtime.format.application.vnd.wrml.design.schema.SchemaDesignFormatter.java
@Override public void writeModel(final OutputStream out, final Model model, final ModelWriteOptions writeOptions) throws ModelWritingException { if (!(model instanceof Schema)) { throw new ModelWritingException("The \"" + getFormatUri() + "\" format cannot write the model.", null, this); }// w w w. jav a 2 s .com final Schema schema = (Schema) model; final ObjectNode rootNode; final ObjectWriter objectWriter; try { // TODO: Should this ObjectMapper be stored in a field? final ObjectMapper objectMapper = new ObjectMapper(); rootNode = createSchemaDesignObjectNode(objectMapper, schema); objectWriter = objectMapper.writer(new DefaultPrettyPrinter()); objectWriter.writeValue(out, rootNode); } catch (final Exception e) { throw new ModelWritingException(getClass().getSimpleName() + " encounter an error while attempting to write a SchemaDesign. Message: " + e.getMessage(), null, this); } }
From source file:org.seedstack.seed.core.internal.data.DataManagerImpl.java
private void dumpAll(List<DataSetMarker<Object>> dataSetMarker, OutputStream outputStream) { try {//from w w w. ja v a 2s . co m JsonGenerator jsonGenerator = this.jsonFactory .createGenerator(new OutputStreamWriter(outputStream, Charset.forName(UTF_8))); ObjectWriter objectWriter = objectMapper.writer(); jsonGenerator.writeStartArray(); for (DataSetMarker<Object> objectDataSetMarker : dataSetMarker) { // start jsonGenerator.writeStartObject(); // metadata jsonGenerator.writeStringField(GROUP, objectDataSetMarker.getGroup()); jsonGenerator.writeStringField(NAME, objectDataSetMarker.getName()); // items jsonGenerator.writeArrayFieldStart(ITEMS); while (objectDataSetMarker.getItems().hasNext()) { objectWriter.writeValue(jsonGenerator, objectDataSetMarker.getItems().next()); } jsonGenerator.writeEndArray(); // end jsonGenerator.writeEndObject(); } jsonGenerator.writeEndArray(); jsonGenerator.flush(); } catch (Exception e) { throw SeedException.wrap(e, DataErrorCode.EXPORT_FAILED); } }
From source file:org.usd.edu.btl.cli.ConvertBets.java
public void toIplant(String inputS, String output) { ObjectMapper betsMapper = new ObjectMapper(); //create new Jackson Mapper File input = new File(inputS); BETSV1 betsTool; //create new seqTool ObjectWriter iplantWriter = betsMapper.writer().withDefaultPrettyPrinter(); //map input json files to iplant class try {/*from w w w . ja v a 2 s . c o m*/ betsTool = betsMapper.readValue(input, BETSV1.class); IplantV1 iplantOutput = BETSConverter.toIplant(betsTool); String iplantOutputJson = iplantWriter.writeValueAsString(iplantOutput); //write Json as String if (output == null) { /*===============PRINT JSON TO CONSOLE AND FILES =================== */ System.err.println("************************************************\n" + "*********PRINTING OUT CONVERSION************\n" + "--------------BETS --> Iplant--------------\n" + "************************************************\n"); //print objects as Json using jackson System.err.println("=== iPlant TO BETS JSON - OUTPUT === \n" + iplantOutputJson); } else { System.err.println("Writing to file..."); //write to files iplantWriter.writeValue(new File(output), iplantOutput); System.err.println(output + " has been created successfully"); } } catch (IOException e) { System.out.println(e.getMessage()); } }