Example usage for com.google.common.collect ImmutableSetMultimap.Builder ImmutableSetMultimap.Builder

Introduction

In this page you can find the example usage for com.google.common.collect ImmutableSetMultimap.Builder ImmutableSetMultimap.Builder.

Prototype

ImmutableSetMultimap.Builder

Source Link

Usage

From source file:uk.ac.ebi.atlas.bioentity.GeneSetPageController.java

@Override
protected void initBioentityPropertyService(String identifier) {
    String species = speciesResult.isSingleSpecies() ? speciesResult.firstSpecies() : "";

    SortedSetMultimap<String, String> propertyValuesByType = TreeMultimap.create();

    ImmutableSetMultimap.Builder<Integer, GoPoTerm> builder = new ImmutableSetMultimap.Builder<>();
    ImmutableSetMultimap<Integer, GoPoTerm> goTermsByDepth = builder.build();
    ImmutableSetMultimap<Integer, GoPoTerm> poTermsByDepth = builder.build();

    identifier = identifier.toUpperCase();

    if (GeneSetUtil.isReactome(identifier)) {
        propertyValuesByType.put("reactome", identifier);
        propertyValuesByType.put(BioEntityPropertyService.PROPERTY_TYPE_DESCRIPTION,
                reactomeClient.fetchPathwayNameFailSafe(identifier));
    } else if (GeneSetUtil.isGeneOntology(identifier)) {
        String termName = goTermTrader.getTermName(identifier);
        propertyValuesByType.put("go", identifier);
        propertyValuesByType.put(BioEntityPropertyService.PROPERTY_TYPE_DESCRIPTION, termName);
        goTermsByDepth = mapGoTermsByDepth(propertyValuesByType.get("go"));
    } else if (GeneSetUtil.isPlantOntology(identifier)) {
        String termName = poTermTrader.getTermName(identifier);
        propertyValuesByType.put("po", identifier);
        propertyValuesByType.put(BioEntityPropertyService.PROPERTY_TYPE_DESCRIPTION, termName);
        poTermsByDepth = mapPoTermsByDepth(propertyValuesByType.get("po"));
    } else if (GeneSetUtil.isInterPro(identifier)) {
        String term = interProTermTrader.getTerm(identifier);
        propertyValuesByType.put("interpro", identifier);
        propertyValuesByType.put(BioEntityPropertyService.PROPERTY_TYPE_DESCRIPTION, term);
    } else if (GeneSetUtil.isPlantReactome(identifier)) {
        propertyValuesByType.put("plant_reactome", identifier);
    }/*from w  ww .ja va 2 s.c o m*/

    SortedSet<String> names = Sets.newTreeSet();
    names.add(identifier);

    bioEntityPropertyService.init(species, propertyValuesByType, goTermsByDepth, poTermsByDepth, names,
            identifier);
}

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From source file:uk.ac.ebi.atlas.bioentity.BioEntityPageController.java

protected ImmutableSetMultimap<Integer, GoPoTerm> mapGoTermsByDepth(Set<String> accessions) {
    ImmutableSetMultimap.Builder<Integer, GoPoTerm> builder = new ImmutableSetMultimap.Builder<>();

    for (String accession : accessions) {
        builder.put(goTermTrader.getDepth(accession), goTermTrader.getTerm(accession));
    }//from w w w.j av a 2 s  .c  om

    return builder.build();
}

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From source file:uk.ac.ebi.atlas.bioentity.BioEntityPageController.java

protected ImmutableSetMultimap<Integer, GoPoTerm> mapPoTermsByDepth(Set<String> accessions) {
    ImmutableSetMultimap.Builder<Integer, GoPoTerm> builder = new ImmutableSetMultimap.Builder<>();

    for (String accession : accessions) {
        builder.put(poTermTrader.getDepth(accession), poTermTrader.getTerm(accession));
    }/*from   w ww  .j a va 2 s  . c  o m*/

    return builder.build();
}

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