Example usage for com.google.common.collect Range lowerEndpoint

Introduction

In this page you can find the example usage for com.google.common.collect Range lowerEndpoint.

Prototype

public C lowerEndpoint() 

Source Link

Document

Returns the lower endpoint of this range.

Usage

From source file:com.google.eclipse.protobuf.validation.ProtobufJavaValidator.java

private String rangeToString(Range<Long> range) {
    if (range.hasLowerBound() && range.hasUpperBound() && range.lowerEndpoint() == range.upperEndpoint()) {
        return String.valueOf(range.lowerEndpoint());
    }//w  w w  . j av a  2 s . co  m

    String upper = range.hasUpperBound() ? String.valueOf(range.upperEndpoint()) : indexRanges.getMaxKeyword();
    return String.format("%d to %s", range.lowerEndpoint(), upper);
}

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From source file:com.helion3.prism.storage.mongodb.MongoRecords.java

/**
 * Recursive method of building condition documents.
 *
 * @param fieldsOrGroups List<Condition>
 * @return Document//from   w  w w  .  j a  va2s.c  o  m
 */
private Document buildConditions(List<Condition> fieldsOrGroups) {
    Document conditions = new Document();

    for (Condition fieldOrGroup : fieldsOrGroups) {
        if (fieldOrGroup instanceof ConditionGroup) {
            ConditionGroup group = (ConditionGroup) fieldOrGroup;
            Document subdoc = buildConditions(group.getConditions());

            if (group.getOperator().equals(Operator.OR)) {
                conditions.append("$or", subdoc);
            } else {
                conditions.putAll(subdoc);
            }
        } else {
            FieldCondition field = (FieldCondition) fieldOrGroup;

            // Match an array of items
            if (field.getValue() instanceof List) {
                String matchRule = field.getMatchRule().equals(MatchRule.INCLUDES) ? "$in" : "$nin";
                conditions.put(field.getFieldName().toString(), new Document(matchRule, field.getValue()));
            }

            else if (field.getMatchRule().equals(MatchRule.EQUALS)) {
                conditions.put(field.getFieldName().toString(), field.getValue());
            }

            else if (field.getMatchRule().equals(MatchRule.GREATER_THAN_EQUAL)) {
                conditions.put(field.getFieldName().toString(), new Document("$gte", field.getValue()));
            }

            else if (field.getMatchRule().equals(MatchRule.LESS_THAN_EQUAL)) {
                conditions.put(field.getFieldName().toString(), new Document("$lte", field.getValue()));
            }

            else if (field.getMatchRule().equals(MatchRule.BETWEEN)) {
                if (!(field.getValue() instanceof Range)) {
                    throw new IllegalArgumentException("\"Between\" match value must be a Range.");
                }

                Range<?> range = (Range<?>) field.getValue();

                Document between = new Document("$gte", range.lowerEndpoint()).append("$lte",
                        range.upperEndpoint());
                conditions.put(field.getFieldName().toString(), between);
            }
        }
    }

    return conditions;
}

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From source file:org.sonatype.nexus.repository.partial.PartialFetchHandler.java

/**
 * Mutate the response into one that returns part of the payload.
 *//*from   w  ww.ja v a  2 s. c om*/
private PayloadResponse partialResponse(final PayloadResponse response, final Payload payload,
        final Range requestedRange) {
    response.setStatus(Status.success(HttpStatus.PARTIAL_CONTENT));
    final Range<Long> rangeToSend = requestedRange;

    Payload partialPayload = new PartialPayload(payload, rangeToSend);

    response.setPayload(partialPayload);

    final Headers responseHeaders = response.getHeaders();
    // ResponseSender takes care of Content-Length header, via payload.size
    responseHeaders.set(HttpHeaders.CONTENT_RANGE,
            rangeToSend.lowerEndpoint() + "-" + rangeToSend.upperEndpoint() + "/" + payload.getSize());

    return response;
}

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From source file:li.klass.fhem.activities.graph.ChartingActivity.java

private void setRangeFor(Optional<Range<Double>> axisRange,
        com.github.mikephil.charting.components.YAxis axis) {
    if (axisRange.isPresent()) {
        Range<Double> range = axisRange.get();
        if (range.hasLowerBound()) {
            axis.setAxisMinValue(range.lowerEndpoint().floatValue());
        }//from   w  ww  . jav a  2s .co  m
        if (range.hasUpperBound()) {
            axis.setAxisMinValue(range.upperEndpoint().floatValue());
        }
    }
}

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From source file:net.sf.mzmine.modules.visualization.tic.TICVisualizerWindow.java

/**
 *//*from  w w w  .  j  a v a 2s  . com*/
public void setRTRange(Range<Double> rtRange) {
    ticPlot.getXYPlot().getDomainAxis().setRange(rtRange.lowerEndpoint(), rtRange.upperEndpoint());
}

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From source file:org.mskcc.shenkers.control.track.gene.GTFGeneModelProvider.java

private void createGtfBgz(File gtf_file, File gtf_bgz_file) throws IOException {
    logger.info("reading {}", gtf_file.getAbsolutePath());
    AbstractFeatureReader<GTFContext, LineIterator> afr = AbstractFeatureReader
            .getFeatureReader(gtf_file.getAbsolutePath(), codec, false);
    CloseableTribbleIterator<GTFContext> iterator = afr.iterator();
    List<GTFContext> gtf = new ArrayList<>();
    while (iterator.hasNext()) {
        GTFContext next = iterator.next();
        gtf.add(next);//from w w  w .java2 s. com
    }
    ImmutableListMultimap<String, GTFContext> transcript_id_multimap = Multimaps.index(gtf.iterator(),
            GTFContext::getTranscriptId);

    logger.info("adding transcript ranges");
    gtf.addAll(transcript_id_multimap.keySet().stream().map(key -> {
        System.out.println(key);
        ImmutableList<GTFContext> contexts = transcript_id_multimap.get(key);
        Range<Integer> span = contexts.stream().map(c -> Range.closed(c.getStart(), c.getEnd()))
                .collect(new RangeSetCollector()).span();

        GTFContext context = new GTFContext(contexts.get(0).getChr(), span.lowerEndpoint(),
                span.upperEndpoint());
        context.setFeature("transcript");
        context.setFrame(".");
        context.setName(".");
        context.setScore(".");
        context.setSource(".");
        context.setStrand('.');
        context.setAttributes(String.format("transcript_id \"%s\";", key));
        return context;
    }).collect(Collectors.toList()));

    logger.info("sorting");
    Collections.sort(gtf, new CoordinateOrderComparator());
    logger.info("writing to compressed output stream");
    BlockCompressedOutputStream os = new BlockCompressedOutputStream(gtf_bgz_file);
    Writer w = new OutputStreamWriter(os);
    for (GTFContext feature : gtf) {
        w.write(codec.encodeToString(feature));
    }
    w.close();
}

---

From source file:io.github.mzmine.modules.plots.msspectrum.datasets.MsSpectrumDataSet.java

public String getDescription() {
    StringBuilder sb = new StringBuilder();
    if (spectrum instanceof MsScan) {
        MsScan scan = (MsScan) spectrum;
        String scanDesc = MsScanUtils.createFullMsScanDescription(scan);
        sb.append(scanDesc);/*from www  .  j a  v  a 2s  .  com*/
    }

    NumberFormat intensityFormat = MZmineCore.getConfiguration().getIntensityFormat();
    NumberFormat mzFormat = MZmineCore.getConfiguration().getMZFormat();

    sb.append("Spectrum type: ");
    sb.append(spectrum.getSpectrumType());
    sb.append("\n");
    sb.append("Number of data points: ");
    sb.append(numOfDataPoints);
    sb.append("\n");
    Range<Double> mzRange = spectrum.getMzRange();
    if (mzRange != null) {
        sb.append("m/z range: ");
        sb.append(mzFormat.format(mzRange.lowerEndpoint()));
        sb.append(" - ");
        sb.append(mzFormat.format(mzRange.upperEndpoint()));
        sb.append(" m/z\n");
    }
    sb.append("Base peak intensity: ");
    sb.append(intensityFormat.format(topIndensity));
    sb.append("\n");
    sb.append("SPLASH ID: ");
    String splash = SplashCalculationAlgorithm.calculateSplash(spectrum);
    sb.append(splash);

    return sb.toString();
}

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From source file:com.google.errorprone.bugpatterns.javadoc.UnescapedEntity.java

private RangeSet<Integer> fixGenerics(RangeSet<Integer> generics, RangeSet<Integer> preTags,
        RangeSet<Integer> dontEmitCodeFix, VisitorState state) {
    RangeSet<Integer> emittedFixes = TreeRangeSet.create();
    for (Range<Integer> range : generics.asRanges()) {
        if (emittedFixes.intersects(range) || dontEmitCodeFix.intersects(range)) {
            continue;
        }//from   w w  w.  j ava 2 s.co  m
        Range<Integer> regionToWrap = preTags.rangeContaining(range.lowerEndpoint());
        if (regionToWrap == null) {
            regionToWrap = range;
        }
        emittedFixes.add(regionToWrap);
        state.reportMatch(
                buildDescription(getDiagnosticPosition(range.lowerEndpoint(), state.getPath().getLeaf()))
                        .setMessage(
                                "This looks like a type with type parameters. The < and > characters here will "
                                        + "be interpreted as HTML, which can be avoided by wrapping it in a "
                                        + "{@code } tag.")
                        .addFix(wrapInCodeTag(regionToWrap)).build());
    }
    return emittedFixes;
}

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From source file:io.github.msdk.rawdata.filters.ResampleFilterAlgorithm.java

/** {@inheritDoc} */
@Override/*from ww w .  jav a2 s . co  m*/
public MsScan performFilter(@Nonnull MsScan scan) {

    // Load data points
    mzBuffer = scan.getMzValues(mzBuffer);
    intensityBuffer = scan.getIntensityValues(intensityBuffer);
    numOfDataPoints = scan.getNumberOfDataPoints();
    newNumOfDataPoints = 0;

    Range<Double> mzRange = scan.getMzRange();

    if (mzRange == null) {
        MsScan result = MsScanUtil.clone(store, scan, true);
        return result;
    }

    if (binSize > mzRange.upperEndpoint()) {
        this.binSize = (int) Math.round(mzRange.upperEndpoint());
    }

    int numberOfBins = (int) Math.round((mzRange.upperEndpoint() - mzRange.lowerEndpoint()) / binSize);
    if (numberOfBins <= 0) {
        numberOfBins++;
    }

    // Create the array with the intensity values for each bin
    Float[] newY = new Float[numberOfBins];
    int intVal = 0;
    for (int i = 0; i < numberOfBins; i++) {
        newY[i] = 0.0f;
        int pointsInTheBin = 0;
        for (int j = 0; j < binSize; j++) {
            if (intVal < numOfDataPoints) {
                newY[i] += intensityBuffer[intVal++];
                pointsInTheBin++;
            }
        }
        newY[i] /= pointsInTheBin;
    }

    // Set the new m/z value in the middle of the bin
    double newX = mzRange.lowerEndpoint() + binSize / 2.0;

    // Creates new DataPoints

    for (Float newIntensity : newY) {
        mzBuffer[newNumOfDataPoints] = newX;
        intensityBuffer[newNumOfDataPoints] = newIntensity;
        newNumOfDataPoints++;

        newX += binSize;
    }

    // Return a new scan with the new data points
    MsScan result = MsScanUtil.clone(store, scan, false);
    result.setDataPoints(mzBuffer, intensityBuffer, newNumOfDataPoints);

    return result;
}

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From source file:com.basistech.tclre.ColorMap.java

/**
 * subrange - allocate new subcolors to this range of chars, fill in arcs.
 * The range will overlap existing ranges; even in the simplest case,
 * it will overlap the initial WHITE range. For each existing range that
 * it overlaps, allocate a new color, mark the range as mapping to that color,
 * and add an arc between the states for that color.
 *///  ww w.  j a  v  a  2 s.  co  m
void subrange(int from, int to, State lp, State rp) throws RegexException {
    /* Avoid one call to map.get() for each character in the range.
     * This map will usually contain one item, but in complex cases more.
     * For example, if we had [a-f][g-h] and then someone asked for [f-g], there
     * would be two. Each of these new ranges will get a new color via subcolor.
     */
    Map<Range<Integer>, Short> curColors = map.subRangeMap(Range.closed(from, to)).asMapOfRanges();
    /*
     * To avoid concurrent mod problems, we need to copy the ranges we are working from.
     */
    List<Range<Integer>> ranges = Lists.newArrayList(curColors.keySet());
    for (Range<Integer> rangeToProcess : ranges) {
        // bound management here irritating.
        int start = rangeToProcess.lowerEndpoint();
        if (rangeToProcess.lowerBoundType() == BoundType.OPEN) {
            start++;
        }
        int end = rangeToProcess.upperEndpoint();
        if (rangeToProcess.upperBoundType() == BoundType.CLOSED) {
            end++;
        }
        // allocate a new subcolor and account it owning the entire range.
        short color = subcolor(start, end - start);
        compiler.getNfa().newarc(Compiler.PLAIN, color, lp, rp);
    }
}

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