Example usage for com.google.common.collect Range upperEndpoint

Introduction

In this page you can find the example usage for com.google.common.collect Range upperEndpoint.

Prototype

public C upperEndpoint()

Source Link

Document

Returns the upper endpoint of this range.

Usage

From source file:net.sf.mzmine.modules.peaklistmethods.identification.onlinedbsearch.databases.HMDBGateway.java

public String[] findCompounds(double mass, MZTolerance mzTolerance, int numOfResults, ParameterSet parameters)
        throws IOException {

    Range<Double> toleranceRange = mzTolerance.getToleranceRange(mass);

    String queryAddress = hmdbSeachAddress + "&query_from=" + toleranceRange.lowerEndpoint() + "&query_to="
            + toleranceRange.upperEndpoint();

    URL queryURL = new URL(queryAddress);

    // Submit the query
    String queryResult = InetUtils.retrieveData(queryURL);

    // Organize the IDs as a TreeSet to keep them sorted
    TreeSet<String> results = new TreeSet<String>();

    // Find IDs in the HTML data
    Pattern pat = Pattern.compile("metabolites/(HMDB[0-9]{5})");
    Matcher matcher = pat.matcher(queryResult);
    while (matcher.find()) {
        String hmdbID = matcher.group(1);
        results.add(hmdbID);//from   ww w . j ava2 s  .c o m
    }

    // Remove all except first numOfResults IDs. The reason why we first
    // retrieve all results and then remove those above numOfResults is to
    // keep the lowest HDMB IDs - these may be the most interesting ones.
    while (results.size() > numOfResults) {
        String lastItem = results.last();
        results.remove(lastItem);
    }

    return results.toArray(new String[0]);

}

From source file:com.rockhoppertech.music.series.time.TimeEvent.java

public boolean overlaps(TimeEvent te) {
    // boolean b = this.getRange().overlaps(te.getRange());
    boolean b = false;
    Range<Double> range1 = this.getOpenRange();
    Range<Double> range2 = te.getOpenRange();
    if (range1.contains(range2.lowerEndpoint()) || range1.contains(range2.upperEndpoint())) {
        b = true;/*from  w  ww.  j  a  v  a 2 s . c  o  m*/
    }

    logger.debug(String.format("overlaps %b %s %s", b, this.getOpenRange(), te.getOpenRange()));

    return b;
}

From source file:io.github.msdk.rawdata.filters.ResampleFilterAlgorithm.java

/** {@inheritDoc} */
@Override//from w w w.  ja va2s. c  om
public MsScan performFilter(@Nonnull MsScan scan) {

    // Load data points
    mzBuffer = scan.getMzValues(mzBuffer);
    intensityBuffer = scan.getIntensityValues(intensityBuffer);
    numOfDataPoints = scan.getNumberOfDataPoints();
    newNumOfDataPoints = 0;

    Range<Double> mzRange = scan.getMzRange();

    if (mzRange == null) {
        MsScan result = MsScanUtil.clone(store, scan, true);
        return result;
    }

    if (binSize > mzRange.upperEndpoint()) {
        this.binSize = (int) Math.round(mzRange.upperEndpoint());
    }

    int numberOfBins = (int) Math.round((mzRange.upperEndpoint() - mzRange.lowerEndpoint()) / binSize);
    if (numberOfBins <= 0) {
        numberOfBins++;
    }

    // Create the array with the intensity values for each bin
    Float[] newY = new Float[numberOfBins];
    int intVal = 0;
    for (int i = 0; i < numberOfBins; i++) {
        newY[i] = 0.0f;
        int pointsInTheBin = 0;
        for (int j = 0; j < binSize; j++) {
            if (intVal < numOfDataPoints) {
                newY[i] += intensityBuffer[intVal++];
                pointsInTheBin++;
            }
        }
        newY[i] /= pointsInTheBin;
    }

    // Set the new m/z value in the middle of the bin
    double newX = mzRange.lowerEndpoint() + binSize / 2.0;

    // Creates new DataPoints

    for (Float newIntensity : newY) {
        mzBuffer[newNumOfDataPoints] = newX;
        intensityBuffer[newNumOfDataPoints] = newIntensity;
        newNumOfDataPoints++;

        newX += binSize;
    }

    // Return a new scan with the new data points
    MsScan result = MsScanUtil.clone(store, scan, false);
    result.setDataPoints(mzBuffer, intensityBuffer, newNumOfDataPoints);

    return result;
}

From source file:org.pascani.dsl.dbmapper.databases.ElasticSearch.java

private Map<String, String> handle(ChangeEvent e) {
    Map<String, String> data = null;
    TaggedValue<Serializable> taggedValue = TaggedValue.instanceFrom(e.value(), Serializable.class);
    if (taggedValue.value() instanceof Number || taggedValue.value() instanceof Boolean
            || taggedValue.value() instanceof String) {
        data = toData(e, taggedValue.value(), taggedValue.tags());
    } else if (taggedValue.value() instanceof Range<?>) {
        Range<?> range = (Range<?>) taggedValue.value();
        Class<?> clazz = range.hasLowerBound() ? range.lowerEndpoint().getClass()
                : range.upperEndpoint().getClass();
        if (Number.class.isAssignableFrom(clazz)) {
            data = toData(e, taggedValue.value(), taggedValue.tags());
        } else {/*from  w  w w.  j a v  a  2 s  .  c o  m*/
            System.out.println("Not supported type " + clazz.getCanonicalName());
        }
    } else {
        System.out.println("Not supported type " + taggedValue.value().getClass().getCanonicalName());
    }
    return data;
}

From source file:li.klass.fhem.activities.graph.YAxis.java

public YAxis(Context context, GPlotAxis axis, String label) {
    this.context = context;
    this.label = label;

    Range<Double> range = axis.getRange().or(Range.range(-1d, BoundType.OPEN, 1d, BoundType.OPEN));
    if (range.hasLowerBound()) {
        minimumY = range.lowerEndpoint();
    }//from  www. jav a  2  s.co m
    if (range.hasUpperBound()) {
        maximumY = range.upperEndpoint();
    }
}

From source file:org.apache.brooklyn.location.jclouds.networking.SharedLocationSecurityGroupCustomizer.java

private Function<Range<Integer>, IpPermission> portRangeToPermission(
        final JcloudsLocationSecurityGroupCustomizer instance, final IpProtocol protocol) {
    return new Function<Range<Integer>, IpPermission>() {
        @Nullable/*from w  ww  .java  2s  .  c  om*/
        @Override
        public IpPermission apply(@Nullable Range<Integer> integerRange) {
            IpPermission extraPermission = IpPermission.builder().fromPort(integerRange.lowerEndpoint())
                    .toPort(integerRange.upperEndpoint()).ipProtocol(protocol)
                    .cidrBlock(instance.getBrooklynCidrBlock()).build();
            return extraPermission;
        }
    };
}

From source file:org.robotframework.red.nattable.painter.RedTableTextPainter.java

private Stream<Range<Integer>> splitRangesForWrappedLabel(final int[] map, final String text,
        final Range<Integer> range) {
    final int lower = range.lowerEndpoint();
    final int upper = range.upperEndpoint() - 1;

    final int lowerEndpoint = map[lower] == -1 ? map[lower + 1] : map[lower];
    final int upperEndpoint = map[upper] == -1 ? map[upper - 1] : map[upper];
    final List<Range<Integer>> transformedRanges = new ArrayList<>();
    if (lowerEndpoint <= upperEndpoint) {
        final Matcher matcher = NEW_LINE_PATTERN.matcher(text.substring(lowerEndpoint, upperEndpoint + 1));

        int lastLower = lowerEndpoint;
        while (matcher.find()) {
            transformedRanges.add(Range.closedOpen(lastLower, matcher.start() + lowerEndpoint));
            lastLower = matcher.end() + lowerEndpoint;
        }//from   w  w  w  .ja va2s  .c o  m
        transformedRanges.add(Range.closedOpen(lastLower, upperEndpoint + 1));
    }
    return transformedRanges.stream();
}

From source file:com.yahoo.gondola.container.client.ZookeeperShardManagerClient.java

@Override
public void rollbackBuckets(Range<Integer> splitRange) throws ShardManagerException, InterruptedException {
    sendActionToAll(MIGRATE_ROLLBACK, splitRange.lowerEndpoint(), splitRange.upperEndpoint());
    if (!waitCondition(null, ZookeeperStat::isNormalOperational, 3000)) {
        throw new ShardManagerException(FAILED_BUCKET_ROLLBACK, "timed out");
    }// w ww.j a  v  a 2s  .  co m
    sendActionToAll(NOOP);
}

From source file:edu.cmu.lti.oaqa.framework.eval.passage.PassageMAPEvalAggregator.java

private float getAvgPsgMAP(List<Passage> docs, List<Passage> gs) {
    if (gs.size() == 0) {
        return 0;
    }/*from   ww w .  j  av a 2s .  co  m*/
    int totalChars = 0;
    int overlapLength = 0;
    float sumPrecision = 0;
    int count = 0;
    Set<Passage> foundGoldTriplets = Sets.newHashSet();
    for (Passage doc : docs) {
        Range<Integer> docRange = Range.closedOpen(doc.getBegin(), doc.getEnd());
        totalChars += docRange.upperEndpoint() - docRange.lowerEndpoint();
        for (Passage g : gs) {
            if (!g.getUri().equals(doc.getUri()))
                continue;
            Range<Integer> gRange = Range.closedOpen(g.getBegin(), g.getEnd());
            if (!docRange.isConnected(gRange)) {
                continue;
            }
            Range<Integer> overlap = docRange.intersection(gRange);
            if (overlap.isEmpty()) {
                continue;
            }
            overlapLength += overlap.upperEndpoint() - overlap.lowerEndpoint();
            sumPrecision += (float) overlapLength / (float) totalChars;
            count++;
            foundGoldTriplets.add(g);
            break;
        }
    }
    int numZeros = Sets.difference(Sets.newHashSet(gs), foundGoldTriplets).size();
    return (float) sumPrecision / (float) (count + numZeros);
}

From source file:com.basistech.tclre.RuntimeColorMap.java

private void computeBmp(RangeMap<Integer, Short> fullMap) {
    for (Map.Entry<Range<Integer>, Short> me : fullMap.asMapOfRanges().entrySet()) {
        Range<Integer> range = me.getKey();
        int min = range.lowerEndpoint();
        if (range.lowerBoundType() == BoundType.OPEN) {
            min++;//from   w ww  .j av a  2  s  . c  o  m
        }
        if (min < Character.MAX_VALUE) {
            int rmax = range.upperEndpoint();
            if (range.upperBoundType() == BoundType.OPEN) {
                rmax--;
            }
            int max = Math.min(Character.MAX_VALUE, rmax);
            for (int x = min; x <= max; x++) {
                this.bmpMap[x] = me.getValue();
            }
        }
    }
}