Example usage for com.mongodb.client.model Variable getName

Introduction

In this page you can find the example usage for com.mongodb.client.model Variable getName.

Prototype

public String getName() 

Source Link

Usage

From source file:org.opencb.opencga.catalog.db.mongodb.CatalogMongoStudyDBAdaptor.java

License:Apache License

@Override
public QueryResult<VariableSet> addFieldToVariableSet(long variableSetId, Variable variable)
        throws CatalogDBException {
    long startTime = startQuery();

    checkVariableSetExists(variableSetId);
    checkVariableNotInVariableSet(variableSetId, variable.getName());

    Bson bsonQuery = Filters.eq(QueryParams.VARIABLE_SET_ID.key(), variableSetId);
    Bson update = Updates.push(QueryParams.VARIABLE_SET.key() + ".$." + VariableSetParams.VARIABLE.key(),
            getMongoDBDocument(variable, "variable"));
    QueryResult<UpdateResult> queryResult = studyCollection.update(bsonQuery, update, null);
    if (queryResult.first().getModifiedCount() == 0) {
        throw CatalogDBException.updateError("VariableSet", variableSetId);
    }//w  w  w. j  av  a 2s  . c  om
    if (variable.isRequired()) {
        dbAdaptorFactory.getCatalogSampleDBAdaptor().addVariableToAnnotations(variableSetId, variable);
        dbAdaptorFactory.getCatalogCohortDBAdaptor().addVariableToAnnotations(variableSetId, variable);
        dbAdaptorFactory.getCatalogIndividualDBAdaptor().addVariableToAnnotations(variableSetId, variable);
    }
    return endQuery("Add field to variable set", startTime, getVariableSet(variableSetId, null));
}

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