List of usage examples for java.awt Color magenta
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From source file:edu.harvard.mcz.imagecapture.PositionTemplateEditor.java
/** * This method initializes jPanel // w ww. ja v a 2 s .c o m * * @return javax.swing.JPanel */ private JPanel getJPanel() { if (jPanel == null) { GridBagConstraints gridBagConstraints24 = new GridBagConstraints(); gridBagConstraints24.fill = GridBagConstraints.BOTH; gridBagConstraints24.gridy = 10; gridBagConstraints24.weightx = 1.0; gridBagConstraints24.anchor = GridBagConstraints.WEST; gridBagConstraints24.gridx = 1; GridBagConstraints gridBagConstraints113 = new GridBagConstraints(); gridBagConstraints113.gridx = 0; gridBagConstraints113.anchor = GridBagConstraints.EAST; gridBagConstraints113.gridy = 10; jLabel9 = new JLabel(); jLabel9.setText("Taxon Name Barcode"); GridBagConstraints gridBagConstraints23 = new GridBagConstraints(); gridBagConstraints23.fill = GridBagConstraints.BOTH; gridBagConstraints23.gridy = 13; gridBagConstraints23.weightx = 1.0; gridBagConstraints23.anchor = GridBagConstraints.WEST; gridBagConstraints23.gridx = 1; GridBagConstraints gridBagConstraints112 = new GridBagConstraints(); gridBagConstraints112.gridx = 0; gridBagConstraints112.gridy = 13; GridBagConstraints gridBagConstraints22 = new GridBagConstraints(); gridBagConstraints22.fill = GridBagConstraints.BOTH; gridBagConstraints22.gridy = 12; gridBagConstraints22.weightx = 1.0; gridBagConstraints22.anchor = GridBagConstraints.WEST; gridBagConstraints22.gridx = 1; GridBagConstraints gridBagConstraints111 = new GridBagConstraints(); gridBagConstraints111.gridx = 0; gridBagConstraints111.gridy = 12; GridBagConstraints gridBagConstraints110 = new GridBagConstraints(); gridBagConstraints110.gridx = 1; gridBagConstraints110.fill = GridBagConstraints.HORIZONTAL; gridBagConstraints110.gridwidth = 1; gridBagConstraints110.anchor = GridBagConstraints.NORTH; gridBagConstraints110.gridy = 14; jLabelFeedback = new JLabel(); jLabelFeedback.setText(" "); GridBagConstraints gridBagConstraints21 = new GridBagConstraints(); gridBagConstraints21.fill = GridBagConstraints.BOTH; gridBagConstraints21.gridy = 0; gridBagConstraints21.weightx = 2.0; gridBagConstraints21.anchor = GridBagConstraints.NORTHWEST; gridBagConstraints21.gridx = 1; GridBagConstraints gridBagConstraints13 = new GridBagConstraints(); gridBagConstraints13.gridx = 0; gridBagConstraints13.anchor = GridBagConstraints.NORTHEAST; gridBagConstraints13.gridy = 0; jLabel8 = new JLabel(); jLabel8.setText("ImageFile"); GridBagConstraints gridBagConstraints18 = new GridBagConstraints(); gridBagConstraints18.fill = GridBagConstraints.BOTH; gridBagConstraints18.gridy = 9; gridBagConstraints18.weightx = 1.0; gridBagConstraints18.anchor = GridBagConstraints.WEST; gridBagConstraints18.gridx = 1; GridBagConstraints gridBagConstraints17 = new GridBagConstraints(); gridBagConstraints17.fill = GridBagConstraints.BOTH; gridBagConstraints17.gridy = 8; gridBagConstraints17.weightx = 1.0; gridBagConstraints17.anchor = GridBagConstraints.WEST; gridBagConstraints17.gridx = 1; GridBagConstraints gridBagConstraints16 = new GridBagConstraints(); gridBagConstraints16.fill = GridBagConstraints.BOTH; gridBagConstraints16.gridy = 7; gridBagConstraints16.weightx = 1.0; gridBagConstraints16.anchor = GridBagConstraints.WEST; gridBagConstraints16.gridx = 1; GridBagConstraints gridBagConstraints15 = new GridBagConstraints(); gridBagConstraints15.fill = GridBagConstraints.BOTH; gridBagConstraints15.gridy = 6; gridBagConstraints15.weightx = 1.0; gridBagConstraints15.anchor = GridBagConstraints.WEST; gridBagConstraints15.gridx = 1; GridBagConstraints gridBagConstraints14 = new GridBagConstraints(); gridBagConstraints14.fill = GridBagConstraints.BOTH; gridBagConstraints14.gridy = 5; gridBagConstraints14.weightx = 1.0; gridBagConstraints14.anchor = GridBagConstraints.WEST; gridBagConstraints14.gridx = 1; GridBagConstraints gridBagConstraints12 = new GridBagConstraints(); gridBagConstraints12.fill = GridBagConstraints.BOTH; gridBagConstraints12.gridy = 3; gridBagConstraints12.weightx = 1.0; gridBagConstraints12.anchor = GridBagConstraints.WEST; gridBagConstraints12.gridx = 1; GridBagConstraints gridBagConstraints11 = new GridBagConstraints(); gridBagConstraints11.gridx = 0; gridBagConstraints11.anchor = GridBagConstraints.EAST; gridBagConstraints11.gridy = 9; jLabel7 = new JLabel(); jLabel7.setText("Specimen"); jLabel7.setForeground(Color.ORANGE); GridBagConstraints gridBagConstraints10 = new GridBagConstraints(); gridBagConstraints10.gridx = 0; gridBagConstraints10.anchor = GridBagConstraints.EAST; gridBagConstraints10.gridy = 8; jLabel6 = new JLabel(); jLabel6.setText("Tray Labels"); jLabel6.setForeground(Color.CYAN); GridBagConstraints gridBagConstraints9 = new GridBagConstraints(); gridBagConstraints9.gridx = 0; gridBagConstraints9.anchor = GridBagConstraints.EAST; gridBagConstraints9.gridy = 7; jLabel5 = new JLabel(); jLabel5.setText("Pin Labels"); jLabel5.setForeground(Color.MAGENTA); GridBagConstraints gridBagConstraints8 = new GridBagConstraints(); gridBagConstraints8.gridx = 0; gridBagConstraints8.anchor = GridBagConstraints.EAST; gridBagConstraints8.insets = new Insets(0, 3, 0, 0); gridBagConstraints8.gridy = 6; jLabel4 = new JLabel(); jLabel4.setText("Taxon Name Label"); jLabel4.setForeground(Color.BLUE); GridBagConstraints gridBagConstraints7 = new GridBagConstraints(); gridBagConstraints7.gridx = 0; gridBagConstraints7.anchor = GridBagConstraints.EAST; gridBagConstraints7.gridy = 5; jLabel3 = new JLabel(); jLabel3.setText("Barcode"); jLabel3.setForeground(Color.RED); GridBagConstraints gridBagConstraints6 = new GridBagConstraints(); gridBagConstraints6.gridx = 0; gridBagConstraints6.anchor = GridBagConstraints.EAST; gridBagConstraints6.gridy = 3; jLabel2 = new JLabel(); jLabel2.setText("Image Size"); GridBagConstraints gridBagConstraints5 = new GridBagConstraints(); gridBagConstraints5.fill = GridBagConstraints.BOTH; gridBagConstraints5.gridy = 2; gridBagConstraints5.weightx = 1.0; gridBagConstraints5.anchor = GridBagConstraints.WEST; gridBagConstraints5.gridx = 1; GridBagConstraints gridBagConstraints4 = new GridBagConstraints(); gridBagConstraints4.fill = GridBagConstraints.BOTH; gridBagConstraints4.gridy = 1; gridBagConstraints4.weightx = 1.0; gridBagConstraints4.anchor = GridBagConstraints.WEST; gridBagConstraints4.gridx = 1; GridBagConstraints gridBagConstraints2 = new GridBagConstraints(); gridBagConstraints2.gridx = 0; gridBagConstraints2.anchor = GridBagConstraints.EAST; gridBagConstraints2.gridy = 2; jLabel1 = new JLabel(); jLabel1.setText("Name"); GridBagConstraints gridBagConstraints1 = new GridBagConstraints(); gridBagConstraints1.gridx = 0; gridBagConstraints1.anchor = GridBagConstraints.EAST; gridBagConstraints1.gridy = 1; jLabel = new JLabel(); jLabel.setText("Template ID"); GridBagConstraints gridBagConstraints = new GridBagConstraints(); gridBagConstraints.gridx = 1; gridBagConstraints.gridy = 11; jPanel = new JPanel(); jPanel.setLayout(new GridBagLayout()); jPanel.add(getJButtonSave(), gridBagConstraints); jPanel.add(jLabel, gridBagConstraints1); jPanel.add(jLabel1, gridBagConstraints2); jPanel.add(getJTextFieldTemplateId(), gridBagConstraints4); jPanel.add(getJTextFieldName(), gridBagConstraints5); jPanel.add(jLabel2, gridBagConstraints6); jPanel.add(jLabel3, gridBagConstraints7); jPanel.add(jLabel4, gridBagConstraints8); jPanel.add(jLabel5, gridBagConstraints9); jPanel.add(jLabel6, gridBagConstraints10); jPanel.add(jLabel7, gridBagConstraints11); jPanel.add(getJTextField2(), gridBagConstraints12); jPanel.add(getJTextField3(), gridBagConstraints14); jPanel.add(getJTextField4(), gridBagConstraints15); jPanel.add(getJTextField5(), gridBagConstraints16); jPanel.add(getJTextField6(), gridBagConstraints17); jPanel.add(getJTextField7(), gridBagConstraints18); jPanel.add(jLabel8, gridBagConstraints13); jPanel.add(getJTextField8(), gridBagConstraints21); jPanel.add(jLabelFeedback, gridBagConstraints110); jPanel.add(getJButton(), gridBagConstraints111); jPanel.add(getJTextFieldBarcodeScan(), gridBagConstraints22); jPanel.add(getJButton1(), gridBagConstraints112); jPanel.add(getJTextField(), gridBagConstraints23); jPanel.add(jLabel9, gridBagConstraints113); jPanel.add(getJTextField9(), gridBagConstraints24); } return jPanel; }
From source file:org.owasp.benchmark.score.report.ScatterHome.java
private void makeLegend(Set<Report> toolResults, double x, double y, XYSeriesCollection dataset, XYPlot xyplot) {/*w w w . j av a 2 s .co m*/ char ch = INITIAL_LABEL; // This is the first label in the Key with all the tools processed by this scorecard int i = -2; // Used to keep track of which row in the key were are processing. Helps calculate the Y axis // location where to put the Key entry boolean printedNonCommercialLabel = false; //non-commercial results for (Report r : toolResults) { OverallResults or = r.getOverallResults(); if (!r.isCommercial()) { // print non-commercial label if there is at least one non-commercial tool if (!printedNonCommercialLabel) { XYTextAnnotation stroketext1 = new XYTextAnnotation("Non-Commercial", x, y + i * -3.3); stroketext1.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext1.setBackgroundPaint(Color.white); stroketext1.setPaint(Color.black); stroketext1.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext1); i++; printedNonCommercialLabel = true; } // Special hack to make it line up better if the letter is an 'I' or 'i' String label = (ch == 'I' || ch == 'i' ? ch + ": " : "" + ch + ": "); double score = or.getScore() * 100; String msg = "\u25A0 " + label + r.getToolNameAndVersion() + " (" + Math.round(score) + "%)"; XYTextAnnotation stroketext3 = new XYTextAnnotation(msg, x, y + i * -3.3); stroketext3.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext3.setBackgroundPaint(Color.white); stroketext3.setPaint(Color.blue); stroketext3.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext3); i++; // Weak hack if there are more than 26 tools scored. This will only get us to 52. if (ch == 'Z') ch = 'a'; else ch++; } } //commercial tools double totalScore = 0; boolean printedCommercialLabel = false; int commercialToolCount = 0; for (Report r : toolResults) { OverallResults or = r.getOverallResults(); if (r.isCommercial()) { // print commercial label if there is at least one commercial tool if (!printedCommercialLabel) { XYTextAnnotation stroketext = new XYTextAnnotation("Commercial", x, y + i * -3.3); stroketext.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext.setBackgroundPaint(Color.white); stroketext.setPaint(Color.black); stroketext.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext); i++; printedCommercialLabel = true; } commercialToolCount++; // Special hack to make it line up better if the letter is an 'I' or 'i' String label = (ch == 'I' || ch == 'i' ? ch + ": " : "" + ch + ": "); double score = or.getScore() * 100; if (!BenchmarkScore.showAveOnlyMode) { String msg = "\u25A0 " + label + r.getToolNameAndVersion() + " (" + Math.round(score) + "%)"; XYTextAnnotation stroketext4 = new XYTextAnnotation(msg, x, y + i * -3.3); stroketext4.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext4.setBackgroundPaint(Color.white); stroketext4.setPaint(Color.blue); stroketext4.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext4); i++; // Weak hack if there are more than 26 tools scored. This will only get us to 52. if (ch == 'Z') ch = 'a'; else ch++; } totalScore += score; } if (r.getToolName().replace(' ', '_').equalsIgnoreCase(focus)) { OverallResults orc = r.getOverallResults(); Point2D focusPoint = new Point2D.Double(orc.getFalsePositiveRate() * 100, orc.getTruePositiveRate() * 100); Color green = new Color(0, 1, 0, 0.5f); makePoint(xyplot, focusPoint, 3, green); } } //commercial average if (commercialToolCount > 1 || (BenchmarkScore.showAveOnlyMode && commercialToolCount == 1)) { double averageScore = totalScore / commercialToolCount; XYTextAnnotation stroketext2 = new XYTextAnnotation( "\u25A0 " + ch + ": Commercial Average" + " (" + Math.round(averageScore) + "%)", x, y + i * -3.3); stroketext2.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext2.setBackgroundPaint(Color.white); stroketext2.setPaint(Color.magenta); stroketext2.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext2); Point2D averagePoint = new Point2D.Double(afr * 100, atr * 100); makePoint(xyplot, averagePoint, 3, Color.magenta); } }
From source file:mil.tatrc.physiology.utilities.csv.plots.MultiPlotter.java
protected void formatMultiPlot(PlotJob job, JFreeChart chart, XYSeriesCollection dataSet1, XYSeriesCollection dataSet2) {// w w w . j a v a 2 s. c o m Color[] blueColors = { Color.blue, Color.cyan, new Color(0, 160, 255), new Color(0, 100, 255), new Color(0, 160, 255), new Color(14, 0, 145), new Color(70, 105, 150) }; Color[] redColors = { Color.red, Color.magenta, new Color(255, 0, 100), new Color(255, 0, 160), Color.pink, new Color(145, 0, 0), new Color(132, 58, 58) }; Color[] variedColors = { Color.red, Color.blue, Color.green, Color.orange, Color.magenta, Color.cyan, Color.gray, new Color(255, 165, 0), new Color(42, 183, 136), new Color(87, 158, 186) }; XYPlot plot = (XYPlot) chart.getPlot(); XYLineAndShapeRenderer renderer1 = (XYLineAndShapeRenderer) plot.getRenderer(); BasicStroke wideLine = new BasicStroke(2.0f); //For Scientific notation NumberFormat formatter = new DecimalFormat("0.######E0"); for (int i = 0; i < plot.getDomainAxisCount(); i++) { plot.getDomainAxis(i).setLabelFont(new Font("SansSerif", Font.PLAIN, job.fontSize)); plot.getDomainAxis(i).setTickLabelFont(new Font("SansSerif", Font.PLAIN, 15)); plot.getDomainAxis(i).setLabelPaint(job.bgColor == Color.red ? Color.white : Color.black); plot.getDomainAxis(i).setTickLabelPaint(job.bgColor == Color.red ? Color.white : Color.black); } for (int i = 0; i < plot.getRangeAxisCount(); i++) { plot.getRangeAxis(i).setLabelFont(new Font("SansSerif", Font.PLAIN, job.fontSize)); plot.getRangeAxis(i).setTickLabelFont(new Font("SansSerif", Font.PLAIN, 15)); plot.getRangeAxis(i).setLabelPaint(job.bgColor == Color.red ? Color.white : Color.black); plot.getRangeAxis(i).setTickLabelPaint(job.bgColor == Color.red ? Color.white : Color.black); NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(i); rangeAxis.setNumberFormatOverride(formatter); } //White background outside of plottable area chart.setBackgroundPaint(job.bgColor); plot.setBackgroundPaint(Color.white); plot.setDomainGridlinePaint(Color.black); plot.setRangeGridlinePaint(Color.black); plot.setDomainCrosshairVisible(true); plot.setRangeCrosshairVisible(true); chart.getLegend().setItemFont(new Font("SansSerif", Font.PLAIN, 15)); chart.getTitle().setFont(new Font("SansSerif", Font.PLAIN, job.fontSize)); chart.getTitle().setPaint(job.bgColor == Color.red ? Color.white : Color.black); //If there is only one Y axis, we just need to color the data series differently if (job.Y2headers == null || job.Y2headers.isEmpty()) { for (int i = 0, cIndex = 0; i < dataSet1.getSeriesCount(); i++, cIndex++) { renderer1.setSeriesStroke(i, wideLine); renderer1.setBaseShapesVisible(false); if (cIndex > 9) cIndex = 0; renderer1.setSeriesFillPaint(i, variedColors[cIndex]); renderer1.setSeriesPaint(i, variedColors[cIndex]); } } //If there are 2 Y axes, we should color the axes to correspond with the data so it isn't (as) confusing else { StandardXYItemRenderer renderer2 = new StandardXYItemRenderer(); plot.setRenderer(1, renderer2); for (int i = 0, cIndex = 0; i < dataSet1.getSeriesCount(); i++, cIndex++) { renderer1.setSeriesStroke(i, wideLine); renderer1.setBaseShapesVisible(false); if (cIndex > 6) cIndex = 0; renderer1.setSeriesFillPaint(i, redColors[cIndex]); renderer1.setSeriesPaint(i, redColors[cIndex]); } for (int i = 0, cIndex = 0; i < dataSet2.getSeriesCount(); i++, cIndex++) { renderer2.setSeriesStroke(i, wideLine); renderer2.setBaseShapesVisible(false); if (cIndex > 6) cIndex = 0; renderer2.setSeriesFillPaint(i, blueColors[cIndex]); renderer2.setSeriesPaint(i, blueColors[cIndex]); } plot.getRangeAxis(0).setLabelPaint(redColors[0]); plot.getRangeAxis(0).setTickLabelPaint(redColors[0]); plot.getRangeAxis(1).setLabelPaint(blueColors[0]); plot.getRangeAxis(1).setTickLabelPaint(blueColors[0]); } }
From source file:hr.restart.util.chart.ChartXY.java
/** * Creates a BAR CHART//from w ww.ja v a 2s . co m * @param dataset The org.jfree.data.CategoryDataset * @param title The title * @return org.jfree.chart.JFreeChart */ private JFreeChart createBarChart(final CategoryDataset dataset, String title, PlotOrientation orientation) { final JFreeChart chart = ChartFactory.createBarChart(title, // chart title "", // domain axis label "", // range axis label dataset, // data orientation, // the plot orientation false, // include legend true, false); chart.setBackgroundPaint(Color.white); // the subtitle from the combobox if (jcb != null) chart.addSubtitle(new TextTitle(jcb.getSelectedItem().toString())); //subtitles setted by the user. if (getSubtitles() != null) for (int i = 0; i < getSubtitles().size(); i++) { chart.addSubtitle(new TextTitle(getSubtitles().get(i).toString())); } final Plot plot = chart.getPlot(); // get a reference to the plot for further customisation... final CategoryPlot categoryPlot = (CategoryPlot) plot; categoryPlot.setNoDataMessage("NO DATA!"); categoryPlot.setRangeAxisLocation(AxisLocation.BOTTOM_OR_LEFT); final CategoryItemRenderer renderer = new CustomRenderer(new Paint[] { Color.red, Color.blue, Color.green, Color.yellow, Color.orange, Color.cyan, Color.magenta, Color.blue }); categoryPlot.setRenderer(renderer); renderer.setLabelGenerator(new StandardCategoryLabelGenerator()); renderer.setItemLabelsVisible(true); // inside //renderer.setBaseItemLabelPaint(Color.white); Font font = new Font("SansSerif", Font.PLAIN, 7); Font derive = font.deriveFont(Font.BOLD); renderer.setBaseItemLabelFont(derive); // margin final CategoryAxis domainAxis = categoryPlot.getDomainAxis(); domainAxis.setLowerMargin(0.0); domainAxis.setUpperMargin(0.0); //domainAxis.setBottomCategoryLabelPosition(new CategoryLabelPosition(RectangleAnchor.BOTTOM, TextBlockAnchor.BOTTOM_CENTER)); domainAxis.setCategoryLabelPositions(new CategoryLabelPositions( new CategoryLabelPosition(RectangleAnchor.TOP, TextBlockAnchor.TOP_CENTER), // TOP new CategoryLabelPosition(RectangleAnchor.BOTTOM, TextBlockAnchor.BOTTOM_CENTER), // BOTTOM new CategoryLabelPosition(RectangleAnchor.LEFT, TextBlockAnchor.CENTER_LEFT, CategoryLabelWidthType.RANGE, 0.30f), // LEFT new CategoryLabelPosition(RectangleAnchor.RIGHT, TextBlockAnchor.CENTER_RIGHT, CategoryLabelWidthType.RANGE, 0.30f) // RIGHT) )); final ItemLabelPosition p = new ItemLabelPosition(ItemLabelAnchor.CENTER, TextAnchor.CENTER, TextAnchor.CENTER, 0.0); renderer.setPositiveItemLabelPosition(p); if (comboBoxOrientation != null) { if (comboBoxOrientation.getSelectedItem() == "Vertikalni") { domainAxis.setCategoryLabelPositions( CategoryLabelPositions.createUpRotationLabelPositions(Math.PI / 4.0)); } } return chart; }
From source file:org.owasp.benchmark.score.report.ScatterVulns.java
private void makeLegend(String category, Set<Report> toolResults, double x, double y, XYSeriesCollection dataset, XYPlot xyplot) { char ch = ScatterHome.INITIAL_LABEL; int i = -2;/*from w w w .ja va 2 s. c o m*/ // non-commercial results boolean printedNonCommercialLabel = false; for (Report r : toolResults) { if (!r.isCommercial()) { // print non commercial label if there is at least one // non-commercial tool if (!printedNonCommercialLabel) { XYTextAnnotation stroketext1 = new XYTextAnnotation("Non-Commercial", x, y + i * -3.3); stroketext1.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext1.setBackgroundPaint(Color.white); stroketext1.setPaint(Color.black); stroketext1.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext1); i++; printedNonCommercialLabel = true; } OverallResults or = r.getOverallResults(); // Special hack to make it line up better if the letter is an 'I' or 'i' String label = (ch == 'I' || ch == 'i' ? ch + ": " : "" + ch + ": "); double score = or.getResults(category).score * 100; String msg = "\u25A0 " + label + r.getToolNameAndVersion() + " (" + Math.round(score) + "%)"; XYTextAnnotation stroketext3 = new XYTextAnnotation(msg, x, y + i * -3.3); stroketext3.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext3.setBackgroundPaint(Color.white); stroketext3.setPaint( r.getToolName().replace(' ', '_').equalsIgnoreCase(focus) ? Color.green : Color.blue); stroketext3.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext3); i++; // Weak hack if there are more than 26 tools scored. This will only get us to 52. if (ch == 'Z') ch = 'a'; else ch++; } } // commercial tools boolean printedCommercialLabel = false; double commercialTotal = 0; for (Report r : toolResults) { OverallResults or = r.getOverallResults(); if (r.isCommercial()) { // print commercial label if there is at least one commercial // tool if (!printedCommercialLabel) { XYTextAnnotation stroketext4 = new XYTextAnnotation("Commercial", x, y + i * -3.3); stroketext4.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext4.setBackgroundPaint(Color.white); stroketext4.setPaint(Color.black); stroketext4.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext4); i++; printedCommercialLabel = true; } commercialToolCount++; double score = or.getResults(category).score * 100; // don't show the commercial tool results if in 'show ave only mode' if (!BenchmarkScore.showAveOnlyMode) { // Special hack to make it line up better if the letter is an 'I' or 'i' String label = (ch == 'I' || ch == 'i' ? ch + ": " : "" + ch + ": "); String msg = "\u25A0 " + label + r.getToolNameAndVersion() + " (" + Math.round(score) + "%)"; XYTextAnnotation stroketext4 = new XYTextAnnotation(msg, x, y + i * -3.3); stroketext4.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext4.setBackgroundPaint(Color.white); stroketext4.setPaint(Color.blue); stroketext4.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext4); i++; // increment the location of the label // Weak hack if there are more than 26 tools scored. This will only get us to 52. if (ch == 'Z') ch = 'a'; else ch++; } commercialTotal += score; if (score < commercialLow) { commercialLow = score; commercialLowToolType = r.getToolType(); } if (score > commercialHigh) { commercialHigh = score; commercialHighToolType = r.getToolType(); } } // Add color emphasis to the tool of focus if (r.getToolName().replace(' ', '_').equalsIgnoreCase(focus)) { OverallResult orc = r.getOverallResults().getResults(category); Point2D focusPoint = new Point2D.Double(orc.falsePositiveRate * 100, orc.truePositiveRate * 100); Color green = new Color(0, 1, 0, 0.5f); makePoint(xyplot, focusPoint, 3, green); } } // commercial average if (commercialToolCount > 1 || (BenchmarkScore.showAveOnlyMode && commercialToolCount == 1)) { commercialAve = commercialTotal / commercialToolCount; XYTextAnnotation stroketext2 = new XYTextAnnotation( "\u25A0 " + ch + ": Commercial Average" + " (" + Math.round(commercialAve) + "%)", x, y + i * -3.3); stroketext2.setTextAnchor(TextAnchor.CENTER_LEFT); stroketext2.setBackgroundPaint(Color.white); stroketext2.setPaint(Color.magenta); stroketext2.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext2); Point2D averagePoint = new Point2D.Double(afr * 100, atr * 100); Color red = new Color(1, 0, 0, 0.5f); makePoint(xyplot, averagePoint, 3, red); } }
From source file:edu.fullerton.ldvservlet.SrcList.java
private PageItem makePlots(ArrayList<ChanSourceData> csdList, String name, Database db, Page vpage, ViewUser vuser, String contextPath) throws WebUtilException, LdvTableException { PageItemList ret = new PageItemList(); CombinedDomainXYPlot plot = new CombinedDomainXYPlot(new DateAxis("Date/Time (UTC)")); plot.setGap(10.0);/*ww w . j av a2s . c o m*/ String baseName = ""; StringBuilder errors = new StringBuilder(); int plotNum = 0; Color[] colors = { Color.RED, Color.BLUE, Color.MAGENTA, Color.ORANGE, Color.DARK_GRAY, Color.GREEN }; boolean gotData = false; TimeInterval timeRange = null; for (ChanSourceData csd : csdList) { TimeInterval ti = csd.getTimeRange(); if (ti != null) { if (timeRange == null) { timeRange = ti; } else if (timeRange.overlaps(ti)) { timeRange = timeRange.mergeIntervals(ti); } else if (ti.getStartGps() < timeRange.getStartGps()) { timeRange.setStartGps(ti.getStartGps()); } else if (ti.getStopGps() > timeRange.getStopGps()) { timeRange.setStopGps(ti.getStopGps()); } } } if (timeRange != null) { for (ChanSourceData csd : csdList) { baseName = csd.getChanInfo().getBaseName(); TimeSeriesCollection mtds = new TimeSeriesCollection(); String server = csd.getChanInfo().getServer().replace(".caltech.edu", ""); String legend = String.format("Type: %1$s at %2$s", csd.getChanInfo().getcType(), server); TimeSeries ts; double[][] data = csd.getGraphData(); if (data == null) { data = new double[2][2]; data[0][0] = timeRange.getStartGps(); data[1][0] = timeRange.getStopGps(); data[0][1] = data[1][1] = 0; errors.append("Error getting data for: ").append(legend).append("<br>"); } else { gotData = true; } for (double[] d : data) { d[1] = d[1] <= 1 ? 1 : d[1]; } ts = getTimeSeries(data, legend); mtds.addSeries(ts); XYAreaRenderer renderer = new XYAreaRenderer(XYAreaRenderer.AREA); BasicStroke str = new BasicStroke(2); int colorIdx = plotNum % colors.length; Color color = colors[colorIdx]; NumberAxis yAxis = new NumberAxis("% Avail"); yAxis.setRange(0, 100); renderer.setBaseFillPaint(color); renderer.setSeriesFillPaint(0, Color.WHITE); renderer.setBaseStroke(str); renderer.setUseFillPaint(true); XYPlot subplot = new XYPlot(mtds, null, yAxis, renderer); plot.add(subplot); plotNum++; } ChartPanel cpnl; JFreeChart chart; String gtitle = String.format("Available data for %1$s ", baseName); String subTitleTxt = String.format("From %1$s to %2$s", TimeAndDate.gpsAsUtcString(timeRange.getStartGps()), TimeAndDate.gpsAsUtcString(timeRange.getStopGps())); plot.setOrientation(PlotOrientation.VERTICAL); chart = new JFreeChart(gtitle, JFreeChart.DEFAULT_TITLE_FONT, plot, true); chart.addSubtitle(new TextTitle(subTitleTxt)); cpnl = new ChartPanel(chart, false, false, false, false, false); PluginSupport psupport = new PluginSupport(); psupport.setup(db, vpage, vuser); int imgId; PageItemImage img = null; try { psupport.setSize(800, 600); imgId = psupport.saveImageAsPNG(cpnl); String url = String.format("%1$s/view?act=getImg&imgId=%2$d", contextPath, imgId); img = new PageItemImage(url, "availability", baseName); } catch (SQLException | IOException | NoSuchAlgorithmException ex) { String ermsg = String.format("Error creating or saving image: %1$s - $2$s", ex.getClass().getSimpleName(), ex.getLocalizedMessage()); errors.append(ermsg); } if (errors.length() > 0) { ret.add(errors.toString()); } if (img != null) { ret.add(img); } } else { ret.add("No data to plot."); } return ret; }
From source file:edu.unibonn.kmeans.mapreduce.plotting.TimeSeriesPlotter_KMeans.java
private Paint getColor(int color_number) { Color curr_color = null;/*from w ww. j a v a 2 s.c o m*/ switch (color_number) { case 0: curr_color = Color.BLUE; break; case 1: curr_color = Color.GREEN; break; case 2: curr_color = Color.RED; break; case 3: curr_color = Color.PINK; break; case 4: curr_color = Color.MAGENTA; break; case 5: curr_color = Color.CYAN; break; case 6: curr_color = Color.DARK_GRAY; break; case 7: curr_color = Color.LIGHT_GRAY; break; case 8: curr_color = Color.YELLOW; break; case 9: curr_color = Color.ORANGE; break; case 10: curr_color = Color.BLACK; break; // case 11: curr_color = Color.YELLOW; // break; // case 12: curr_color = Color.BLACK; // break; // case 13: curr_color = Color.BLACK; // break; // case 14: curr_color = Color.BLACK; // break; // case 15: curr_color = Color.BLACK; // break; // case 16: curr_color = Color.BLACK; // break; // case 17: curr_color = Color.BLACK; // break; // case 18: curr_color = Color.BLACK; // break; // case 20: curr_color = Color.BLACK; // break; // case 21: curr_color = Color.BLACK; // break; // case 22: curr_color = Color.BLACK; // break; // case 23: curr_color = Color.BLACK; // break; default: curr_color = Color.WHITE; break; } return curr_color; }
From source file:edu.ku.brc.specify.extras.ViewToSchemaReview.java
/** * // w ww . ja v a2s . c o m */ public void checkSchemaAndViews() { Hashtable<String, HashSet<String>> viewFieldHash = new Hashtable<String, HashSet<String>>(); SpecifyAppContextMgr sacm = (SpecifyAppContextMgr) AppContextMgr.getInstance(); for (ViewIFace view : sacm.getEntirelyAllViews()) { //System.err.println(view.getName() + " ----------------------"); for (AltViewIFace av : view.getAltViews()) { ViewDefIFace vd = av.getViewDef(); if (vd.getType() == ViewType.form) { DBTableInfo ti = DBTableIdMgr.getInstance().getByClassName(vd.getClassName()); if (ti != null) { HashSet<String> tiHash = viewFieldHash.get(ti.getName()); if (tiHash == null) { tiHash = new HashSet<String>(); viewFieldHash.put(ti.getName(), tiHash); } FormViewDef fvd = (FormViewDef) vd; for (FormRowIFace row : fvd.getRows()) { for (FormCellIFace cell : row.getCells()) { if (cell.getType() == FormCellIFace.CellType.panel) { FormCellPanelIFace panelCell = (FormCellPanelIFace) cell; for (String fieldName : panelCell.getFieldNames()) { tiHash.add(fieldName); } } else if (cell.getType() == FormCellIFace.CellType.field || cell.getType() == FormCellIFace.CellType.subview) { String fieldName = cell.getName(); if (!cell.isIgnoreSetGet() && !fieldName.equals("this")) { DBFieldInfo fi = ti.getFieldByName(fieldName); if (fi != null) { //System.err.println("Form Field["+fieldName+"] is in schema."); tiHash.add(fieldName); } else { DBRelationshipInfo ri = ti.getRelationshipByName(fieldName); if (ri == null) { //System.err.println("Form Field["+fieldName+"] not in table."); } else { tiHash.add(fieldName); } } } else if (cell instanceof FormCellFieldIFace) { FormCellFieldIFace fcf = (FormCellFieldIFace) cell; if (fcf.getUiType() == FormCellFieldIFace.FieldType.plugin) { String pluginName = fcf.getProperty("name"); if (StringUtils.isNotEmpty(pluginName)) { checkPluginForNames(fcf, pluginName, tiHash); } } } } } } } } } } for (DBTableInfo ti : DBTableIdMgr.getInstance().getTables()) { int cnt = 0; HashSet<String> tiHash = viewFieldHash.get(ti.getName()); if (tiHash != null) { tblTitle2Name.put(ti.getTitle(), ti.getName()); //System.err.println(ti.getName() + " ----------------------"); for (DBFieldInfo fi : ti.getFields()) { Boolean isInForm = tiHash.contains(fi.getName()); modelList.add( createRow(ti.getTitle(), fi.getName(), fi.getTitle(), isInForm, fi.isHidden(), cnt++)); } for (DBRelationshipInfo ri : ti.getRelationships()) { Boolean isInForm = tiHash.contains(ri.getName()); modelList.add( createRow(ti.getTitle(), ri.getName(), ri.getTitle(), isInForm, ri.isHidden(), cnt++)); } } } viewModel = new ViewModel(); JTable table = new JTable(viewModel); sorter = new TableRowSorter<TableModel>(viewModel); searchTF = new JAutoCompTextField(20); table.setRowSorter(sorter); CellConstraints cc = new CellConstraints(); PanelBuilder pb = new PanelBuilder(new FormLayout("f:p:g", "p,4px,f:p:g,2px,p:g")); SearchBox searchBox = new SearchBox(searchTF, null); filterCBX = UIHelper.createComboBox(new String[] { "None", "Not On Form, Not Hidden", "On Form, Hidden" }); PanelBuilder searchPB = new PanelBuilder(new FormLayout("p,2px,p, f:p:g, p,2px,p", "p")); searchPB.add(UIHelper.createI18NFormLabel("SEARCH"), cc.xy(1, 1)); searchPB.add(searchBox, cc.xy(3, 1)); searchPB.add(UIHelper.createI18NFormLabel("Filter"), cc.xy(5, 1)); searchPB.add(filterCBX, cc.xy(7, 1)); JLabel legend = UIHelper.createLabel( "<HTML><li><font color=\"red\">Red</font> - Not on form and not hidden</li><li><font color=\"magenta\">Magenta</font> - On the form , but is hidden</li><li>Black - Correct</li>"); legend.setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED)); PanelBuilder legPB = new PanelBuilder(new FormLayout("p,f:p:g", "p")); legPB.add(legend, cc.xy(1, 1)); pb.add(searchPB.getPanel(), cc.xy(1, 1)); pb.add(UIHelper.createScrollPane(table), cc.xy(1, 3)); pb.add(legPB.getPanel(), cc.xy(1, 5)); pb.setDefaultDialogBorder(); sorter.setRowFilter(null); searchTF.getDocument().addDocumentListener(new DocumentAdaptor() { @Override protected void changed(DocumentEvent e) { SwingUtilities.invokeLater(new Runnable() { /* (non-Javadoc) * @see java.lang.Runnable#run() */ @Override public void run() { if (filterCBX.getSelectedIndex() > 0) { blockCBXUpdate = true; filterCBX.setSelectedIndex(-1); blockCBXUpdate = false; } String text = searchTF.getText(); sorter.setRowFilter(text.isEmpty() ? null : RowFilter.regexFilter("^(?i)" + text, 0, 1)); } }); } }); filterCBX.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent e) { SwingUtilities.invokeLater(new Runnable() { @Override public void run() { if (!blockCBXUpdate) { RowFilter<TableModel, Integer> filter = null; int inx = filterCBX.getSelectedIndex(); if (inx > 0) { filter = filterCBX.getSelectedIndex() == 1 ? new NotOnFormNotHiddenRowFilter() : new OnFormIsHiddenRowFilter(); } sorter.setRowFilter(filter); } } }); } }); table.setDefaultRenderer(String.class, new BiColorTableCellRenderer(false)); table.setDefaultRenderer(Boolean.class, new BiColorBooleanTableCellRenderer()); table.getColumnModel().getColumn(0).setCellRenderer(new TitleCellFadeRenderer()); table.getColumnModel().getColumn(3).setCellRenderer(new BiColorTableCellRenderer(true)); table.getColumnModel().getColumn(2).setCellRenderer(new BiColorTableCellRenderer(false) { @SuppressWarnings("unchecked") @Override public Component getTableCellRendererComponent(JTable tableArg, Object value, boolean isSelected, boolean hasFocus, int row, int column) { JLabel lbl = (JLabel) super.getTableCellRendererComponent(tableArg, value, isSelected, hasFocus, row, column); /*if (sorter.getRowFilter() != null) { System.out.println(" getRowCount:"+sorter.getModel().getRowCount()); Pair<String, Integer> col1Pair = (Pair<String, Integer>)sorter.getModel().getValueAt(row, 0); rowData = modelList.get(col1Pair.second); } else { rowData = modelList.get(row); }*/ //System.out.println(" R2:"+row+" "+rowData[0]+"/"+rowData[1]+" - "+rowData[3]+"|"+rowData[4]); if (value instanceof TableInfo) { TableInfo pair = (TableInfo) value; Object[] rowData = modelList.get(pair.getSecond()); lbl.setText(rowData[0].toString()); } else if (value instanceof Pair<?, ?>) { Pair<String, Integer> pair = (Pair<String, Integer>) value; Object[] rowData = modelList.get(pair.getSecond()); boolean isOnForm = rowData[3] instanceof Boolean ? (Boolean) rowData[3] : ((String) rowData[3]).equals("Yes"); boolean isHidden = rowData[4] instanceof Boolean ? (Boolean) rowData[4] : ((String) rowData[4]).equals("true"); if (!isOnForm && !isHidden) { lbl.setForeground(Color.RED); } else if (isOnForm && isHidden) { lbl.setForeground(Color.MAGENTA); } else { lbl.setForeground(Color.BLACK); } lbl.setText(pair.getFirst()); } else { lbl.setText(value.toString()); } return lbl; } }); //UIHelper.makeTableHeadersCentered(table, false); UIHelper.calcColumnWidths(table, null); //Removing fix all button because fix() method is broken (bug #8087)... /*CustomDialog dlg = new CustomDialog((Frame)UIRegistry.getTopWindow(), "", true, CustomDialog.OKCANCELAPPLY, pb.getPanel()) { @Override protected void applyButtonPressed() { fix(this); } }; dlg.setApplyLabel("Fix All");*/ CustomDialog dlg = new CustomDialog((Frame) UIRegistry.getTopWindow(), "", true, CustomDialog.OKCANCEL, pb.getPanel()); //... end removing fix all button dlg.setVisible(true); if (!dlg.isCancelled()) { updateSchema(); } }
From source file:controller.ChartAndGraphServlet.java
/** * Creates the appropriate chart for the patient history page or the * statistics page. Line charts are created to display a longitudinal view * of patient results on the history page. The statistics page includes pie * charts, bar charts, histograms, and box and whisker charts. * * @param request servlet request//from ww w. j a v a2 s . c o m * @param response servlet response * @throws IOException */ public void getChart(HttpServletRequest request, HttpServletResponse response) throws IOException { HttpSession session = request.getSession(); response.setContentType("image/png"); OutputStream outputStream = response.getOutputStream(); final int widthIncreaseThreshold = 18; final int incrementalIncreaseThreshold = 22; final int incrementalIncreaseInPixels = 45; final int treatmentClassUnknownIndex = 6; int width = 640; int height = 450; int bigWidth = 780; ReferenceContainer rc = (ReferenceContainer) session.getServletContext().getAttribute("references"); HealthyTargetReference htr = rc.getHealthyTargets(); String action = request.getParameter("action"); switch (action) { case "a1c": { ArrayList<A1cResult> a1cHistory = (ArrayList<A1cResult>) session .getAttribute(SessionObjectUtility.A1C_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = a1cHistory.size() - 1; i > -1; i--) { dataset.addValue(a1cHistory.get(i).getValue(), "A1C", a1cHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.A1C_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("A1C History", "dates", "A1C", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getA1c().getUpperBound(); BigDecimal lower = htr.getA1c().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (a1cHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (a1cHistory.size() > incrementalIncreaseThreshold) { int increments = a1cHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "psa": { ArrayList<ContinuousResult> psaHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.PSA_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = psaHistory.size() - 1; i > -1; i--) { dataset.addValue(psaHistory.get(i).getValue(), "PSA", psaHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.PSA_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("PSA History", "dates", "PSA", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getPsa().getUpperBound(); BigDecimal lower = htr.getPsa().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (psaHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (psaHistory.size() > incrementalIncreaseThreshold) { int increments = psaHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "alt": { ArrayList<ContinuousResult> altHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.ALT_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = altHistory.size() - 1; i > -1; i--) { dataset.addValue(altHistory.get(i).getValue(), "ALT", altHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.ALT_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("ALT History", "dates", "ALT", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getAlt().getUpperBound(); BigDecimal lower = htr.getAlt().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (altHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (altHistory.size() > incrementalIncreaseThreshold) { int increments = altHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "ast": { ArrayList<ContinuousResult> astHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.AST_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = astHistory.size() - 1; i > -1; i--) { dataset.addValue(astHistory.get(i).getValue(), "AST", astHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.AST_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("AST History", "dates", "AST", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getAst().getUpperBound(); BigDecimal lower = htr.getAst().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (astHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (astHistory.size() > incrementalIncreaseThreshold) { int increments = astHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "bp": { ArrayList<BloodPressureResult> bpHistory = (ArrayList<BloodPressureResult>) session .getAttribute(SessionObjectUtility.BP_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = bpHistory.size() - 1; i > -1; i--) { dataset.addValue(bpHistory.get(i).getSystolicValue(), "systolic", bpHistory.get(i).getDate()); dataset.addValue(bpHistory.get(i).getDiastolicValue(), "diastolic", bpHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.BP_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("Blood Pressure History", "dates", "blood pressure", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upperSystole = htr.getBloodPressureSystole().getUpperBound(); BigDecimal upperDiastole = htr.getBloodPressureDiastole().getUpperBound(); if (upperSystole != null) { ValueMarker marker = new ValueMarker(upperSystole.doubleValue()); marker.setPaint(Color.MAGENTA); plot.addRangeMarker(marker); } if (upperDiastole != null) { ValueMarker marker = new ValueMarker(upperDiastole.doubleValue()); marker.setPaint(Color.BLUE); plot.addRangeMarker(marker); } if (bpHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (bpHistory.size() > incrementalIncreaseThreshold) { int increments = bpHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "bmi": { ArrayList<ContinuousResult> bmiHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.BMI_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = bmiHistory.size() - 1; i > -1; i--) { dataset.addValue(bmiHistory.get(i).getValue(), "BMI", bmiHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.BMI_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("BMI History", "dates", "BMI", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getBmi().getUpperBound(); BigDecimal lower = htr.getBmi().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (bmiHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (bmiHistory.size() > incrementalIncreaseThreshold) { int increments = bmiHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "creatinine": { ArrayList<ContinuousResult> creatinineHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.CREATININE_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = creatinineHistory.size() - 1; i > -1; i--) { dataset.addValue(creatinineHistory.get(i).getValue(), "creatinine", creatinineHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.CREATININE_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("Creatinine History", "dates", "creatinine", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getCreatinine().getUpperBound(); BigDecimal lower = htr.getCreatinine().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (creatinineHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (creatinineHistory.size() > incrementalIncreaseThreshold) { int increments = creatinineHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "egfr": { ArrayList<ContinuousResult> egfrHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.EGFR_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = egfrHistory.size() - 1; i > -1; i--) { dataset.addValue(egfrHistory.get(i).getValue(), "eGFR", egfrHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.EGFR_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("eGFR History", "dates", "eGFR", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getEgfr().getUpperBound(); BigDecimal lower = htr.getEgfr().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (egfrHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (egfrHistory.size() > incrementalIncreaseThreshold) { int increments = egfrHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "glucose": { ArrayList<ContinuousResult> glucoseHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.GLUCOSE_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = glucoseHistory.size() - 1; i > -1; i--) { dataset.addValue(glucoseHistory.get(i).getValue(), "glucose", glucoseHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.GLUCOSE_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("Glucose History", "dates", "glucose", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getGlucoseAc().getUpperBound(); BigDecimal lower = htr.getGlucoseAc().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (glucoseHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (glucoseHistory.size() > incrementalIncreaseThreshold) { int increments = glucoseHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "hdl": { ArrayList<ContinuousResult> hdlHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.HDL_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = hdlHistory.size() - 1; i > -1; i--) { dataset.addValue(hdlHistory.get(i).getValue(), "HDL", hdlHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.HDL_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /*get the chart */ JFreeChart chart = ChartFactory.createLineChart("HDL History", "dates", "HDL", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upperFemale = htr.getHdlFemale().getUpperBound(); BigDecimal lowerFemale = htr.getHdlFemale().getLowerBound(); BigDecimal upperMale = htr.getHdlMale().getUpperBound(); BigDecimal lowerMale = htr.getHdlMale().getLowerBound(); if (upperFemale != null) { ValueMarker marker = new ValueMarker(upperFemale.doubleValue()); marker.setPaint(Color.MAGENTA); plot.addRangeMarker(marker); } if (lowerFemale != null) { ValueMarker marker = new ValueMarker(lowerFemale.doubleValue()); marker.setPaint(Color.MAGENTA); plot.addRangeMarker(marker); } if (upperMale != null) { ValueMarker marker = new ValueMarker(upperMale.doubleValue()); marker.setPaint(Color.BLUE); plot.addRangeMarker(marker); } if (lowerMale != null) { ValueMarker marker = new ValueMarker(lowerMale.doubleValue()); marker.setPaint(Color.BLUE); plot.addRangeMarker(marker); } if (hdlHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (hdlHistory.size() > incrementalIncreaseThreshold) { int increments = hdlHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "ldl": { ArrayList<LdlResult> ldlHistory = (ArrayList<LdlResult>) session .getAttribute(SessionObjectUtility.LDL_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = ldlHistory.size() - 1; i > -1; i--) { dataset.addValue(ldlHistory.get(i).getValue(), "LDL", ldlHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.LDL_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("LDL History", "dates", "LDL", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getLdl().getUpperBound(); BigDecimal lower = htr.getLdl().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (ldlHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (ldlHistory.size() > incrementalIncreaseThreshold) { int increments = ldlHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "compliance": { ArrayList<ContinuousResult> complianceHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.COMPLIANCE_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = complianceHistory.size() - 1; i > -1; i--) { dataset.addValue(complianceHistory.get(i).getValue(), "compliance", complianceHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.COMPLIANCE_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("Compliance History", "dates", "compliance", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); if (complianceHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (complianceHistory.size() > incrementalIncreaseThreshold) { int increments = complianceHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "physicalActivity": { ArrayList<DiscreteResult> physicalActivityHistory = (ArrayList<DiscreteResult>) session .getAttribute(SessionObjectUtility.PHYSICAL_ACTIVITY_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = physicalActivityHistory.size() - 1; i > -1; i--) { dataset.addValue(physicalActivityHistory.get(i).getValue(), "physical activity", physicalActivityHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.PHYSICAL_ACTIVITY_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("Physical Activity History", "dates", "min per wk", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getPhysicalActivity().getUpperBound(); BigDecimal lower = htr.getPhysicalActivity().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (physicalActivityHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (physicalActivityHistory.size() > incrementalIncreaseThreshold) { int increments = physicalActivityHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "psychological": { ArrayList<PsychologicalScreeningResult> psychologicalHistory = (ArrayList<PsychologicalScreeningResult>) session .getAttribute(SessionObjectUtility.PSYCHOLOGICAL_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = psychologicalHistory.size() - 1; i > -1; i--) { dataset.addValue(psychologicalHistory.get(i).getScore(), "PHQ9 score", psychologicalHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.PSYCHOLOGICAL_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("Psychological Screening History", "dates", "score", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); if (psychologicalHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (psychologicalHistory.size() > incrementalIncreaseThreshold) { int increments = psychologicalHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "t4": { ArrayList<ContinuousResult> t4History = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.T4_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = t4History.size() - 1; i > -1; i--) { dataset.addValue(t4History.get(i).getValue(), "T4", t4History.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.T4_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("T4 History", "dates", "T4", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getT4().getUpperBound(); BigDecimal lower = htr.getT4().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (t4History.size() > widthIncreaseThreshold) { width = bigWidth; } if (t4History.size() > incrementalIncreaseThreshold) { int increments = t4History.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "triglycerides": { ArrayList<ContinuousResult> triglyceridesHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.TRIGLYCERIDES_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = triglyceridesHistory.size() - 1; i > -1; i--) { dataset.addValue(triglyceridesHistory.get(i).getValue(), "triglycerides", triglyceridesHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.TRIGLYCERIDES_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("Triglycerides History", "dates", "triglycerides", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getTriglycerides().getUpperBound(); BigDecimal lower = htr.getTriglycerides().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (triglyceridesHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (triglyceridesHistory.size() > incrementalIncreaseThreshold) { int increments = triglyceridesHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "tsh": { ArrayList<TshResult> tshHistory = (ArrayList<TshResult>) session .getAttribute(SessionObjectUtility.TSH_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = tshHistory.size() - 1; i > -1; i--) { dataset.addValue(tshHistory.get(i).getValue(), "TSH", tshHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.TSH_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("TSH History", "dates", "TSH", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getTsh().getUpperBound(); BigDecimal lower = htr.getTsh().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (tshHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (tshHistory.size() > incrementalIncreaseThreshold) { int increments = tshHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "uacr": { ArrayList<ContinuousResult> uacrHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.UACR_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = uacrHistory.size() - 1; i > -1; i--) { dataset.addValue(uacrHistory.get(i).getValue(), "UACR", uacrHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.UACR_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("UACR History", "dates", "UACR", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upper = htr.getUacr().getUpperBound(); BigDecimal lower = htr.getUacr().getLowerBound(); if (upper != null) { ValueMarker marker = new ValueMarker(upper.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (lower != null) { ValueMarker marker = new ValueMarker(lower.doubleValue()); marker.setPaint(Color.YELLOW); plot.addRangeMarker(marker); } if (uacrHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (uacrHistory.size() > incrementalIncreaseThreshold) { int increments = uacrHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "waist": { ArrayList<ContinuousResult> waistHistory = (ArrayList<ContinuousResult>) session .getAttribute(SessionObjectUtility.WAIST_GRAPH_POINTS); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); /* add the data */ for (int i = waistHistory.size() - 1; i > -1; i--) { dataset.addValue(waistHistory.get(i).getValue(), "waist", waistHistory.get(i).getDate()); } /* remove reference */ session.setAttribute(SessionObjectUtility.WAIST_GRAPH_POINTS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createLineChart("Waist History", "dates", "waist", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); /* angle the x-axis labels */ CategoryPlot plot = chart.getCategoryPlot(); CategoryAxis xAxis = (CategoryAxis) plot.getDomainAxis(); xAxis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); /* show the healthy target boundaries */ BigDecimal upperFemale = htr.getWaistFemale().getUpperBound(); BigDecimal lowerFemale = htr.getWaistFemale().getLowerBound(); BigDecimal upperMale = htr.getWaistMale().getUpperBound(); BigDecimal lowerMale = htr.getWaistMale().getLowerBound(); if (upperFemale != null) { ValueMarker marker = new ValueMarker(upperFemale.doubleValue()); marker.setPaint(Color.MAGENTA); plot.addRangeMarker(marker); } if (lowerFemale != null) { ValueMarker marker = new ValueMarker(lowerFemale.doubleValue()); marker.setPaint(Color.MAGENTA); plot.addRangeMarker(marker); } if (upperMale != null) { ValueMarker marker = new ValueMarker(upperMale.doubleValue()); marker.setPaint(Color.BLUE); plot.addRangeMarker(marker); } if (lowerMale != null) { ValueMarker marker = new ValueMarker(lowerMale.doubleValue()); marker.setPaint(Color.BLUE); plot.addRangeMarker(marker); } if (waistHistory.size() > widthIncreaseThreshold) { width = bigWidth; } if (waistHistory.size() > incrementalIncreaseThreshold) { int increments = waistHistory.size() % incrementalIncreaseThreshold; for (int i = 0; i < increments; i++) { width += incrementalIncreaseInPixels; } } ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "agedemographics": { DemographicData demographicData = (DemographicData) session .getAttribute(SessionObjectUtility.AGE_DEMOGRAPHICS_GRAPH_DATA); HistogramDataset dataset = new HistogramDataset(); ArrayList<Integer> ages = demographicData.getAges(); if (ages.size() > 0) { double[] vector = new double[ages.size()]; for (int i = 0; i < vector.length; i++) { vector[i] = ages.get(i); } /* add the data */ dataset.addSeries("number of patients", vector, 10); /* remove reference */ session.setAttribute(SessionObjectUtility.AGE_DEMOGRAPHICS_GRAPH_DATA, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createHistogram("Age Distribution", "age", "number of patients", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); XYPlot plot = chart.getXYPlot(); final XYBarRenderer renderer = (XYBarRenderer) plot.getRenderer(); /* creating a shadow */ renderer.setShadowXOffset(4.0); renderer.setShadowYOffset(1.5); renderer.setShadowVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); } break; } case "genderdemographics": { DemographicData demographicData = (DemographicData) session .getAttribute(SessionObjectUtility.GENDER_DEMOGRAPHICS_GRAPH_DATA); DefaultPieDataset dataset = new DefaultPieDataset(); /* add the data */ dataset.setValue("female", demographicData.getPercentFemale()); dataset.setValue("male", demographicData.getPercentMale()); /* remove reference */ session.setAttribute(SessionObjectUtility.GENDER_DEMOGRAPHICS_GRAPH_DATA, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createPieChart3D("Gender", dataset, legend, tooltips, urls); final PiePlot3D plot = (PiePlot3D) chart.getPlot(); plot.setStartAngle(90); plot.setForegroundAlpha(0.60f); plot.setInteriorGap(0.02); PieSectionLabelGenerator labels = new StandardPieSectionLabelGenerator("{0}: ({2})", new DecimalFormat("0"), new DecimalFormat("0%")); plot.setLabelGenerator(labels); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "racedemographics": { DemographicData demographicData = (DemographicData) session .getAttribute(SessionObjectUtility.RACE_DEMOGRAPHICS_GRAPH_DATA); DefaultPieDataset dataset = new DefaultPieDataset(); /* add the data */ dataset.setValue("White", demographicData.getPercentWhite()); dataset.setValue("African American", demographicData.getPercentAfricanAmerican()); dataset.setValue("Asian/Pacific Islander", demographicData.getPercentAsian()); dataset.setValue("American Indian/Alaska Native", demographicData.getPercentIndian()); dataset.setValue("Hispanic", demographicData.getPercentHispanic()); dataset.setValue("Middle Eastern", demographicData.getPercentMiddleEastern()); dataset.setValue("Other", demographicData.getPercentOther()); /* remove reference */ session.setAttribute(SessionObjectUtility.RACE_DEMOGRAPHICS_GRAPH_DATA, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createPieChart3D("Race", dataset, legend, tooltips, urls); final PiePlot3D plot = (PiePlot3D) chart.getPlot(); plot.setStartAngle(90); plot.setForegroundAlpha(0.60f); plot.setInteriorGap(0.02); PieSectionLabelGenerator labels = new StandardPieSectionLabelGenerator("{0}: ({2})", new DecimalFormat("0"), new DecimalFormat("0%")); plot.setLabelGenerator(labels); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "lasta1c": { Stats glycemicStats = (Stats) session.getAttribute(SessionObjectUtility.LAST_A1C_DATA); HistogramDataset dataset = new HistogramDataset(); ArrayList<CategoricalValue> lastA1cValues = new ArrayList<>(); if (glycemicStats.getGroups() != null) { int i; for (i = 0; i < glycemicStats.getGroups().size(); i++) { if (glycemicStats.getGroups().get(i) != null) { lastA1cValues.addAll(glycemicStats.getGroups().get(i)); } } } if (lastA1cValues.size() > 0) { double[] vector = new double[lastA1cValues.size()]; for (int i = 0; i < vector.length; i++) { vector[i] = lastA1cValues.get(i).getValue().doubleValue(); } /* add the data */ dataset.addSeries("number of patients", vector, 15); /* remove reference */ session.setAttribute(SessionObjectUtility.LAST_A1C_DATA, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createHistogram("Most Recent A1C Values", "last A1C(%)", "number of patients", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); XYPlot plot = chart.getXYPlot(); final XYBarRenderer renderer = (XYBarRenderer) plot.getRenderer(); /* creating a shadow */ renderer.setShadowXOffset(4.0); renderer.setShadowYOffset(1.5); renderer.setShadowVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); } break; } case "lasta1cbyclassattendance": { final int topGroupIndex = 4; Stats glycemicStats = (Stats) session.getAttribute(SessionObjectUtility.LAST_A1C_BY_CLASS_DATA); DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset(); if (glycemicStats.getGroups() != null) { for (int i = 0; i < glycemicStats.getGroups().size(); i++) { if ((glycemicStats.getGroups().get(i) != null) && (!glycemicStats.getGroups().get(i).isEmpty())) { List values = new ArrayList(); for (CategoricalValue cv : glycemicStats.getGroups().get(i)) { values.add(cv.getValue()); } if (i == topGroupIndex) { dataset.add(BoxAndWhiskerCalculator.calculateBoxAndWhiskerStatistics(values), "last A1C(%)", "5 or more"); } else { dataset.add(BoxAndWhiskerCalculator.calculateBoxAndWhiskerStatistics(values), "last A1C(%)", i + 1); } } } } /* remove reference */ session.setAttribute(SessionObjectUtility.LAST_A1C_BY_CLASS_DATA, null); CategoryAxis domainAxis = new CategoryAxis("number of classes attended"); NumberAxis rangeAxis = new NumberAxis("last A1C(%)"); BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer(); CategoryPlot plot = new CategoryPlot(dataset, domainAxis, rangeAxis, renderer); JFreeChart chart = new JFreeChart("Most Recent A1C by Classes Attended", plot); renderer.setMeanVisible(false); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "lastbmimales": { Stats bmiMalesStats = (Stats) session.getAttribute(SessionObjectUtility.LAST_BMI_MALES_DATA); HistogramDataset dataset = new HistogramDataset(); ArrayList<CategoricalValue> lastBmiMalesValues = new ArrayList<>(); if ((bmiMalesStats.getGroups() != null) && (!bmiMalesStats.getGroups().isEmpty())) { for (int i = 0; i < bmiMalesStats.getGroups().size(); i++) { if (bmiMalesStats.getGroups().get(i) != null) { lastBmiMalesValues.addAll(bmiMalesStats.getGroups().get(i)); } } } if (lastBmiMalesValues.size() > 0) { double[] vector = new double[lastBmiMalesValues.size()]; for (int i = 0; i < vector.length; i++) { vector[i] = lastBmiMalesValues.get(i).getValue().doubleValue(); } /* add the data */ dataset.addSeries("number of patients", vector, 15); /* remove reference */ session.setAttribute(SessionObjectUtility.LAST_BMI_MALES_DATA, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createHistogram("Most Recent BMI Values for Males", "last BMI", "number of patients", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); XYPlot plot = chart.getXYPlot(); final XYBarRenderer renderer = (XYBarRenderer) plot.getRenderer(); /* creating a shadow */ renderer.setShadowXOffset(4.0); renderer.setShadowYOffset(1.5); renderer.setShadowVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); } break; } case "lastbmifemales": { Stats bmiFemalesStats = (Stats) session.getAttribute(SessionObjectUtility.LAST_BMI_FEMALES_DATA); HistogramDataset dataset = new HistogramDataset(); ArrayList<CategoricalValue> lastBmiFemalesValues = new ArrayList<>(); if ((bmiFemalesStats.getGroups() != null) && (!bmiFemalesStats.getGroups().isEmpty())) { for (int i = 0; i < bmiFemalesStats.getGroups().size(); i++) { if (bmiFemalesStats.getGroups().get(i) != null) { lastBmiFemalesValues.addAll(bmiFemalesStats.getGroups().get(i)); } } } if (lastBmiFemalesValues.size() > 0) { double[] vector = new double[lastBmiFemalesValues.size()]; for (int i = 0; i < vector.length; i++) { vector[i] = lastBmiFemalesValues.get(i).getValue().doubleValue(); } /* add the data */ dataset.addSeries("number of patients", vector, 15); /* remove reference */ session.setAttribute(SessionObjectUtility.LAST_BMI_FEMALES_DATA, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createHistogram("Most Recent BMI Values for Females", "last BMI", "number of patients", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); XYPlot plot = chart.getXYPlot(); final XYBarRenderer renderer = (XYBarRenderer) plot.getRenderer(); /* creating a shadow */ renderer.setShadowXOffset(4.0); renderer.setShadowYOffset(1.5); renderer.setShadowVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); } break; } case "lastbmimalesbyclassattendance": { final int topGroupIndex = 4; Stats bmiMalesStats = (Stats) session.getAttribute(SessionObjectUtility.LAST_BMI_MALES_BY_CLASS_DATA); DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset(); if (bmiMalesStats.getGroups() != null) { for (int i = 0; i < bmiMalesStats.getGroups().size(); i++) { if ((bmiMalesStats.getGroups().get(i) != null) && (!bmiMalesStats.getGroups().get(i).isEmpty())) { List values = new ArrayList(); for (CategoricalValue cv : bmiMalesStats.getGroups().get(i)) { values.add(cv.getValue()); } if (i == topGroupIndex) { dataset.add(BoxAndWhiskerCalculator.calculateBoxAndWhiskerStatistics(values), "last BMI (males)", "5 or more"); } else { dataset.add(BoxAndWhiskerCalculator.calculateBoxAndWhiskerStatistics(values), "last BMI (males)", i + 1); } } } } /* remove reference */ session.setAttribute(SessionObjectUtility.LAST_BMI_MALES_BY_CLASS_DATA, null); CategoryAxis domainAxis = new CategoryAxis("number of classes attended"); NumberAxis rangeAxis = new NumberAxis("last BMI (males)"); BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer(); CategoryPlot plot = new CategoryPlot(dataset, domainAxis, rangeAxis, renderer); JFreeChart chart = new JFreeChart("Most Recent BMI for Males by Classes Attended", plot); renderer.setMeanVisible(false); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "lastbmifemalesbyclassattendance": { final int topGroupIndex = 4; Stats bmiFemalesStats = (Stats) session .getAttribute(SessionObjectUtility.LAST_BMI_FEMALES_BY_CLASS_DATA); DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset(); if (bmiFemalesStats.getGroups() != null) { for (int i = 0; i < bmiFemalesStats.getGroups().size(); i++) { if ((bmiFemalesStats.getGroups().get(i) != null) && (!bmiFemalesStats.getGroups().get(i).isEmpty())) { List values = new ArrayList(); for (CategoricalValue cv : bmiFemalesStats.getGroups().get(i)) { values.add(cv.getValue()); } if (i == topGroupIndex) { dataset.add(BoxAndWhiskerCalculator.calculateBoxAndWhiskerStatistics(values), "last BMI (females)", "5 or more"); } else { dataset.add(BoxAndWhiskerCalculator.calculateBoxAndWhiskerStatistics(values), "last BMI (females)", i + 1); } } } } /* remove reference */ session.setAttribute(SessionObjectUtility.LAST_BMI_FEMALES_BY_CLASS_DATA, null); CategoryAxis domainAxis = new CategoryAxis("number of classes attended"); NumberAxis rangeAxis = new NumberAxis("last BMI (females)"); BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer(); CategoryPlot plot = new CategoryPlot(dataset, domainAxis, rangeAxis, renderer); JFreeChart chart = new JFreeChart("Most Recent BMI for Females by Classes Attended", plot); renderer.setMeanVisible(false); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "lasta1cbytreatment": { final int firstIndex = 0; Stats glycemicStats = (Stats) session.getAttribute(SessionObjectUtility.LAST_A1C_BY_TREATMENT); DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset(); if (glycemicStats.getGroups() != null) { for (int i = 0; i < glycemicStats.getGroups().size(); i++) { if ((glycemicStats.getGroups().get(i) != null) && (!glycemicStats.getGroups().get(i).isEmpty())) { String category = glycemicStats.getGroups().get(i).get(firstIndex) != null ? glycemicStats.getGroups().get(i).get(firstIndex).getCategory() : ""; List values = new ArrayList(); for (CategoricalValue cv : glycemicStats.getGroups().get(i)) { values.add(cv.getValue()); } dataset.add(BoxAndWhiskerCalculator.calculateBoxAndWhiskerStatistics(values), "last A1C(%)", category); } } } /* remove reference */ session.setAttribute(SessionObjectUtility.LAST_A1C_BY_TREATMENT, null); CategoryAxis domainAxis = new CategoryAxis("treatment class"); NumberAxis rangeAxis = new NumberAxis("last A1C(%)"); BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer(); CategoryPlot plot = new CategoryPlot(dataset, domainAxis, rangeAxis, renderer); JFreeChart chart = new JFreeChart("Most Recent A1C by Treatment Class", plot); renderer.setMeanVisible(false); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "treatmentclasscounts": { int treatmentClassCountsIndex = 1; Stats treatmentData = (Stats) session.getAttribute(SessionObjectUtility.CLASS_COUNTS_TREATMENT_STATS); DefaultPieDataset dataset = new DefaultPieDataset(); /* add the treatment data to the dataset */ for (int i = 0; i < treatmentClassUnknownIndex + 1; i++) { dataset.setValue(treatmentData.getGroups().get(treatmentClassCountsIndex).get(i).getCategory(), treatmentData.getGroups().get(treatmentClassCountsIndex).get(i).getValue()); } /* remove reference */ session.setAttribute(SessionObjectUtility.CLASS_COUNTS_TREATMENT_STATS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; /* get the chart */ JFreeChart chart = ChartFactory.createPieChart3D("Treatment Class", dataset, legend, tooltips, urls); final PiePlot3D plot = (PiePlot3D) chart.getPlot(); plot.setStartAngle(90); plot.setForegroundAlpha(0.60f); plot.setInteriorGap(0.02); PieSectionLabelGenerator labels = new StandardPieSectionLabelGenerator("{0}: {1} ({2})", new DecimalFormat("0"), new DecimalFormat("0%")); plot.setLabelGenerator(labels); chart.setBorderPaint(Color.GREEN); chart.setBorderStroke(new BasicStroke(5.0f)); chart.setBorderVisible(true); ChartUtilities.writeChartAsPNG(outputStream, chart, width, height); break; } case "treatmentgenderclasscounts": { int maleClassCountsIndex = 2; int femaleClassCountsIndex = 3; Stats treatmentData = (Stats) session .getAttribute(SessionObjectUtility.GENDER_CLASS_COUNTS_TREATMENT_STATS); final DefaultCategoryDataset dataset = new DefaultCategoryDataset(); HashMap<Integer, String> genderMap = new HashMap<>(); genderMap.put(maleClassCountsIndex, "Male"); genderMap.put(femaleClassCountsIndex, "Female"); /* load data for males and females into the dataset */ for (int i = femaleClassCountsIndex; i > maleClassCountsIndex - 1; i--) { for (int j = 0; j < treatmentClassUnknownIndex + 1; j++) { dataset.addValue(treatmentData.getGroups().get(i).get(j).getValue(), genderMap.get(i), treatmentData.getGroups().get(i).get(j).getCategory()); } } /* remove reference */ session.setAttribute(SessionObjectUtility.GENDER_CLASS_COUNTS_TREATMENT_STATS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; JFreeChart barChart = ChartFactory.createBarChart("Treatment Class by Gender", "Treatment Class", "Number of Patients", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); barChart.setBorderPaint(Color.GREEN); barChart.setBorderStroke(new BasicStroke(5.0f)); barChart.setBorderVisible(true); CategoryPlot plot = barChart.getCategoryPlot(); final BarRenderer renderer = (BarRenderer) plot.getRenderer(); /* creating a shadow */ renderer.setShadowXOffset(4.0); renderer.setShadowYOffset(1.5); renderer.setShadowVisible(true); ChartUtilities.writeChartAsPNG(outputStream, barChart, width, height); break; } case "treatmentraceclasscounts": { int whiteClassCountsIndex = 4; int africanAmericanClassCountsIndex = 5; int asianPacificIslanderClassCountsIndex = 6; int americanIndianAlaskaNativeClassCountsIndex = 7; int hispanicClassCountsIndex = 8; int middleEasternClassCountsIndex = 9; int otherClassCountsIndex = 10; Stats treatmentData = (Stats) session .getAttribute(SessionObjectUtility.RACE_CLASS_COUNTS_TREATMENT_STATS); final DefaultCategoryDataset dataset = new DefaultCategoryDataset(); HashMap<Integer, String> raceMap = new HashMap<>(); raceMap.put(whiteClassCountsIndex, "White"); raceMap.put(africanAmericanClassCountsIndex, "African American"); raceMap.put(asianPacificIslanderClassCountsIndex, "Asian/Pacific Islander"); raceMap.put(americanIndianAlaskaNativeClassCountsIndex, "American Indian/Alaska Native"); raceMap.put(hispanicClassCountsIndex, "Hispanic"); raceMap.put(middleEasternClassCountsIndex, "Middle Eastern"); raceMap.put(otherClassCountsIndex, "Other"); /* load data for each race into the dataset */ for (int i = whiteClassCountsIndex; i < otherClassCountsIndex + 1; i++) { for (int j = 0; j < treatmentClassUnknownIndex + 1; j++) { dataset.addValue(treatmentData.getGroups().get(i).get(j).getValue(), raceMap.get(i), treatmentData.getGroups().get(i).get(j).getCategory()); } } /* remove reference */ session.setAttribute(SessionObjectUtility.RACE_CLASS_COUNTS_TREATMENT_STATS, null); boolean legend = true; boolean tooltips = false; boolean urls = false; JFreeChart barChart = ChartFactory.createStackedBarChart("Treatment Class by Race", "Treatment Class", "Number of Patients", dataset, PlotOrientation.VERTICAL, legend, tooltips, urls); barChart.setBorderPaint(Color.GREEN); barChart.setBorderStroke(new BasicStroke(5.0f)); barChart.setBorderVisible(true); CategoryPlot plot = barChart.getCategoryPlot(); final BarRenderer renderer = (BarRenderer) plot.getRenderer(); /* creating a shadow */ renderer.setShadowXOffset(4.0); renderer.setShadowYOffset(1.5); renderer.setShadowVisible(true); ChartUtilities.writeChartAsPNG(outputStream, barChart, width, height); break; } default: break; } }
From source file:mil.tatrc.physiology.utilities.csv.plots.RespiratoryPFTPlotter.java
public void createGraph(PlotJob job, Map<String, List<Double>> PFTData, Map<String, List<Double>> data, List<LogEvent> events, List<SEAction> actions) { CSVPlotTool plotTool = new CSVPlotTool(); //to leverage existing functions String title = job.name + "_"; XYSeriesCollection dataSet = new XYSeriesCollection(); double maxY = 0; double minY = Double.MAX_VALUE; for (int i = 0; i < job.headers.size(); i++) { title = title + job.headers.get(i) + "_"; XYSeries dataSeries;//from w ww . j a v a 2 s . c o m dataSeries = plotTool.createXYSeries(job.headers.get(i), data.get("Time(s)"), data.get(job.headers.get(i))); dataSet.addSeries(dataSeries); maxY = maxY < dataSeries.getMaxY() ? dataSeries.getMaxY() : maxY; minY = minY > dataSeries.getMinY() ? dataSeries.getMinY() : minY; } //Now make a data series for PFT data and check its max and min XYSeries dataSeries = plotTool.createXYSeries("PFT Total Lung Volume (mL)", PFTData.get("Time"), PFTData.get("Volume")); dataSet.addSeries(dataSeries); maxY = maxY < dataSeries.getMaxY() ? dataSeries.getMaxY() : maxY; minY = minY > dataSeries.getMinY() ? dataSeries.getMinY() : minY; title = title + "vs_Time"; //Override the constructed title if desired if (job.titleOverride != null && !job.titleOverride.isEmpty() && !job.titleOverride.equalsIgnoreCase("None")) title = job.titleOverride; double rangeLength = maxY - minY; if (Math.abs(rangeLength) < 1e-6) { rangeLength = .01; } class AEEntry implements Comparable<AEEntry> { public String name; public List<Double> times = new ArrayList<Double>(); public List<Double> YVals = new ArrayList<Double>(); public String type = ""; public int compareTo(AEEntry entry) { return times.get(0) < entry.times.get(0) ? -1 : times.get(0) > entry.times.get(0) ? 1 : 0; } } List<AEEntry> allActionsAndEvents = new ArrayList<AEEntry>(); if (!job.skipAllEvents) { //Make points for each event //Treat each event like two points on the same vertical line for (LogEvent event : events) { boolean skip = false; for (String eventToSkip : job.eventOmissions) { if (event.text.contains(eventToSkip)) skip = true; } if (skip) continue; AEEntry entry = new AEEntry(); entry.times.add(event.time.getValue()); if (job.logAxis) entry.YVals.add(maxY); else if (job.forceZeroYAxisBound && maxY < 0) entry.YVals.add(-.01); else entry.YVals.add(maxY + 0.15 * rangeLength); entry.times.add(event.time.getValue()); if (job.logAxis) entry.YVals.add(minY); else if (job.forceZeroYAxisBound && minY > 0) entry.YVals.add(-.01); else entry.YVals.add(minY - 0.15 * rangeLength); entry.name = event.text + "\r\nt=" + event.time.getValue(); entry.type = "EVENT:"; allActionsAndEvents.add(entry); } } if (!job.skipAllActions) { //Make similar entries for actions for (SEAction action : actions) { boolean skip = false; for (String actionToSkip : job.actionOmissions) { if (action.toString().contains(actionToSkip)) skip = true; } if (skip) continue; if (action.toString().contains("Advance Time")) continue; AEEntry entry = new AEEntry(); entry.times.add(action.getScenarioTime().getValue()); if (job.logAxis) entry.YVals.add(maxY); else if (job.forceZeroYAxisBound && maxY < 0) entry.YVals.add(-.01); else entry.YVals.add(maxY + 0.15 * rangeLength); entry.times.add(action.getScenarioTime().getValue()); if (job.logAxis) entry.YVals.add(minY); else if (job.forceZeroYAxisBound && minY > 0) entry.YVals.add(-.01); else entry.YVals.add(minY - 0.15 * rangeLength); entry.name = action.toString() + "\r\nt=" + action.getScenarioTime().getValue(); entry.type = "ACTION:"; allActionsAndEvents.add(entry); } } //Sort the list Collections.sort(allActionsAndEvents); //Add a series for each entry for (AEEntry entry : allActionsAndEvents) { dataSet.addSeries(plotTool.createXYSeries(entry.type + entry.name, entry.times, entry.YVals)); } //set labels String XAxisLabel = "Time(s)"; String YAxisLabel = job.headers.get(0); JFreeChart chart = ChartFactory.createXYLineChart( job.titleOverride != null && job.titleOverride.equalsIgnoreCase("None") ? "" : title, // chart title XAxisLabel, // x axis label YAxisLabel, // y axis label dataSet, // data PlotOrientation.VERTICAL, // orientation true, // include legend true, // tooltips false // urls ); Log.info("Creating Graph " + title); XYPlot plot = (XYPlot) chart.getPlot(); if (!job.logAxis) { // Determine Y range double resMax0 = maxY; double resMin0 = minY; if (Double.isNaN(resMax0) || Double.isNaN(resMin0)) plot.getDomainAxis().setLabel("Range is NaN"); if (DoubleUtils.isZero(resMin0)) resMin0 = -0.000001; if (DoubleUtils.isZero(resMax0)) resMax0 = 0.000001; if (job.forceZeroYAxisBound && resMin0 >= 0) resMin0 = -.000001; if (job.forceZeroYAxisBound && resMax0 <= 0) resMax0 = .000001; rangeLength = resMax0 - resMin0; ValueAxis yAxis = plot.getRangeAxis(); if (rangeLength != 0) yAxis.setRange(resMin0 - 0.15 * rangeLength, resMax0 + 0.15 * rangeLength);//15% buffer so we can see top and bottom clearly //Add another Y axis to the right side for easier reading ValueAxis rightYAxis = new NumberAxis(); rightYAxis.setRange(resMin0 - 0.15 * rangeLength, resMax0 + 0.15 * rangeLength); rightYAxis.setLabel(""); //Override the bounds if desired try { if (job.Y1LowerBound != null) { yAxis.setLowerBound(job.Y1LowerBound); rightYAxis.setLowerBound(job.Y1LowerBound); } if (job.Y1UpperBound != null) { yAxis.setUpperBound(job.Y1UpperBound); rightYAxis.setUpperBound(job.Y1UpperBound); } } catch (Exception e) { Log.error( "Couldn't set Y bounds. You probably tried to set a bound on an axis that doesn't exist."); } plot.setRangeAxis(0, yAxis); plot.setRangeAxis(1, rightYAxis); } else { double resMin = minY; double resMax = maxY; if (resMin <= 0.0) resMin = .00001; LogarithmicAxis yAxis = new LogarithmicAxis("Log(" + YAxisLabel + ")"); LogarithmicAxis rightYAxis = new LogarithmicAxis(""); yAxis.setLowerBound(resMin); rightYAxis.setLowerBound(resMin); yAxis.setUpperBound(resMax); rightYAxis.setUpperBound(resMax); //Override the bounds if desired try { if (job.Y1LowerBound != null) { yAxis.setLowerBound(job.Y1LowerBound); rightYAxis.setLowerBound(job.Y1LowerBound); } if (job.Y1UpperBound != null) { yAxis.setUpperBound(job.Y1UpperBound); rightYAxis.setUpperBound(job.Y1UpperBound); } } catch (Exception e) { Log.error( "Couldn't set Y bounds. You probably tried to set a bound on an axis that doesn't exist."); } plot.setRangeAxis(0, yAxis); plot.setRangeAxis(1, rightYAxis); } //Override X bounds if desired try { if (job.X1LowerBound != null) plot.getDomainAxis(0).setLowerBound(job.X1LowerBound); if (job.X1UpperBound != null) plot.getDomainAxis(0).setUpperBound(job.X1UpperBound); } catch (Exception e) { Log.error("Couldn't set X bounds. You probably tried to set a bound on an axis that doesn't exist."); } //Override labels if desired if (job.X1Label != null && !plot.getDomainAxis(0).getLabel().contains("NaN")) plot.getDomainAxis(0).setLabel(job.X1Label.equalsIgnoreCase("None") ? "" : job.X1Label); if (job.Y1Label != null) plot.getRangeAxis(0).setLabel(job.Y1Label.equalsIgnoreCase("None") ? "" : job.Y1Label); formatRPFTPlot(job, chart); plot.setDomainGridlinesVisible(job.showGridLines); plot.setRangeGridlinesVisible(job.showGridLines); //Changing line widths and colors XYItemRenderer r = plot.getRenderer(); BasicStroke wideLine = new BasicStroke(2.0f); Color[] AEcolors = { Color.red, Color.green, Color.black, Color.magenta, Color.orange }; Color[] dataColors = { Color.blue, Color.cyan, Color.gray, Color.black, Color.red }; for (int i = 0, cIndex = 0; i < dataSet.getSeriesCount(); i++, cIndex++) { r.setSeriesStroke(i, wideLine); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(false); if (cIndex > 4) cIndex = 0; if (i < job.headers.size()) //Our actual data { renderer.setSeriesFillPaint(i, dataColors[cIndex]); renderer.setSeriesPaint(i, dataColors[cIndex]); } else //actions and events in procession of other colors { renderer.setSeriesFillPaint(i, AEcolors[cIndex]); renderer.setSeriesPaint(i, AEcolors[cIndex]); } } //Split the auto-generated legend into two legends, one for data and one for actions and events LegendItemCollection originalLegendCollection = plot.getLegendItems(); final LegendItemCollection dataLegendCollection = new LegendItemCollection(); int i; for (i = 0; i < job.headers.size() && i < originalLegendCollection.getItemCount(); i++) { if (originalLegendCollection.get(i).getLabel().startsWith("ACTION") || originalLegendCollection.get(i).getLabel().startsWith("EVENT")) break; dataLegendCollection.add(originalLegendCollection.get(i)); } final LegendItemCollection remainingLegendCollection = new LegendItemCollection(); for (; i < originalLegendCollection.getItemCount(); i++) { remainingLegendCollection.add(originalLegendCollection.get(i)); } chart.removeLegend(); LegendItemSource source = new LegendItemSource() { LegendItemCollection lic = new LegendItemCollection(); { lic.addAll(dataLegendCollection); } public LegendItemCollection getLegendItems() { return lic; } }; LegendTitle dataLegend = new LegendTitle(source); dataLegend.setMargin(new RectangleInsets(1.0, 1.0, 1.0, 1.0)); dataLegend.setBorder(2, 2, 2, 2); dataLegend.setBackgroundPaint(Color.white); dataLegend.setPosition(RectangleEdge.TOP); dataLegend.setItemFont(new Font("SansSerif", Font.PLAIN, 22)); chart.addLegend(dataLegend); source = new LegendItemSource() { LegendItemCollection lic = new LegendItemCollection(); { lic.addAll(remainingLegendCollection); } public LegendItemCollection getLegendItems() { return lic; } }; LegendTitle actionEventsLegend = new LegendTitle(source); actionEventsLegend.setMargin(new RectangleInsets(1.0, 1.0, 1.0, 1.0)); actionEventsLegend.setBorder(2, 2, 2, 2); actionEventsLegend.setBackgroundPaint(Color.white); actionEventsLegend.setPosition(RectangleEdge.BOTTOM); actionEventsLegend.setItemFont(new Font("SansSerif", Font.PLAIN, 22)); if (!job.hideAELegend && !job.removeAllLegends) chart.addLegend(actionEventsLegend); if (job.removeAllLegends) chart.removeLegend(); int verticalPixels = 800 + 170 * (allActionsAndEvents.size() / 5); try { FileUtils.createDirectory(job.outputDir); String filename = job.outputFilename == null ? job.outputDir + "/" + plotTool.MakeFileName(title) + ".jpg" : job.outputDir + "/" + job.outputFilename; if (!filename.endsWith(".jpg")) filename = filename + ".jpg"; File JPGFile = new File(filename); if (job.imageHeight != null && job.imageWidth != null) ChartUtilities.saveChartAsJPEG(JPGFile, chart, job.imageWidth, job.imageHeight); else if (!job.hideAELegend && !job.removeAllLegends) ChartUtilities.saveChartAsJPEG(JPGFile, chart, 1600, verticalPixels); else ChartUtilities.saveChartAsJPEG(JPGFile, chart, 1600, 800); } catch (IOException e) { Log.error(e.getMessage()); } }