Example usage for java.io File toURI

Introduction

In this page you can find the example usage for java.io File toURI.

Prototype

public URI toURI()

Source Link

Document

Constructs a file: URI that represents this abstract pathname.

Usage

From source file:iristk.cfg.ABNFGrammar.java

public ABNFGrammar(File file) throws IOException, GrammarException {
    this(file.toURI());
}

From source file:se.crisp.codekvast.agent.daemon.appversion.ManifestAppVersionStrategy.java

private URL search(File dir, String regex) throws MalformedURLException {
    if (!dir.isDirectory()) {
        log.warn("{} is not a directory", dir);
        return null;
    }//from ww w.  j a va 2 s  .c om

    File[] files = dir.listFiles();

    if (files != null) {
        for (File file : files) {
            if (file.isFile() && file.getName().matches(regex)) {
                log.debug("Found {}", file);
                return new URL(file.toURI().toString());
            }
        }
        for (File file : files) {
            if (file.isDirectory()) {
                URL url = search(file, regex);
                if (url != null) {
                    return url;
                }
            }
        }
    }
    return null;
}

From source file:edu.berkeley.compbio.phyloutils.HugenholtzTaxonomyService.java

private synchronized static InputStream getInputStream(String filename)
        throws PhyloUtilsException, IOException {
    //ClassLoader classClassLoader = new NewickParser().getClass().getClassLoader();
    ClassLoader threadClassLoader = Thread.currentThread().getContextClassLoader();
    //ClassLoader systemClassLoader = ClassLoader.getSystemClassLoader();

    //URL res1 = classClassLoader.getResource(filename);
    URL res = threadClassLoader.getResource(filename);
    //URL res3 = systemClassLoader.getResource(filename);

    if (res == null) {
        File f = new File(filename);
        if (f.exists()) {
            res = f.toURI().toURL(); // new URL("file://" + filename);
        }//from  ww w  . ja v a2  s. co  m
    }

    if (res == null) {
        logger.error("file not found: " + filename);
        //Get the System Classloader
        //ClassLoader.getSystemClassLoader();

        //Get the URLs
        URL[] urls = ((URLClassLoader) threadClassLoader).getURLs();

        for (int i = 0; i < urls.length; i++) {
            logger.warn(urls[i].getFile());
        }

        throw new PhyloUtilsException("file not found: " + filename);
    }

    InputStream is = res.openStream();
    is = filename.endsWith(".gz") ? new GZIPInputStream(is) : is;
    /*if (is == null)
        {
        is = new FileInputStream(filename);
        }*/
    return is;
}

From source file:eu.planets_project.services.utils.DigitalObjectUtilsTests.java

@Test
public void toFileDigitalObject() throws MalformedURLException, IOException {
    DigitalObject object = new DigitalObject.Builder(Content.byReference(testZip)).build();
    File file = DigitalObjectUtils.toFile(object);
    Assert.assertTrue(// w  ww  .ja v a  2s . c om
            IOUtils.contentEquals(object.getContent().getInputStream(), file.toURI().toURL().openStream()));
}

From source file:eu.scape_project.droid_identify.droid.DroidIdentificationTask.java

/**
 * Run droid identification on file//from   w w w. j  av a  2  s .  c  o  m
 *
 * @param filePath Absolute file path (local/hdfs)
 * @return Result list
 */
public String identify(String filePath) {
    InputStream in = null;
    String puid = "fmt/0";
    IdentificationRequest request = null;
    try {

        File file = new File(filePath);
        URI resourceUri = file.toURI();
        // check if the file is available in the local file system and try
        // to open a hdfs stream otherwise
        if (file.exists()) {
            in = new FileInputStream(file);
        } else {
            Path hdfsPath = new Path(filePath);
            in = hdfs.open(hdfsPath);
        }

        LOG.debug("Identification of resource: " + resourceUri.toString());
        RequestMetaData metaData = new RequestMetaData(file.length(), file.lastModified(), file.getName());
        LOG.debug("File length: " + file.length());
        LOG.debug("File modified: " + file.lastModified());
        LOG.debug("File name: " + file.getName());
        RequestIdentifier identifier = new RequestIdentifier(resourceUri);
        request = new FileSystemIdentificationRequest(metaData, identifier);
        request.open(in);
        IdentificationResultCollection results = bsi.matchBinarySignatures(request);
        bsi.removeLowerPriorityHits(results);
        if (results == null || results.getResults() == null || results.getResults().isEmpty()) {
            LOG.warn("No identification result");
        } else {
            List<IdentificationResult> result = results.getResults();
            if (result != null && !result.isEmpty()) {
                for (IdentificationResult ir : result) {
                    String id = ir.getPuid();
                    if (id != null && !id.isEmpty()) {
                        // take first puid, ignore others
                        puid = id;
                        break;
                    }
                }
            }
            if (puid.isEmpty()) {
                puid = "fmt/0"; // unknown
            }
        }
        request.close();
    } catch (IOException ex) {
        LOG.error("I/O Exception", ex);
    } finally {
        IOUtils.closeQuietly(in);
        if (request != null) {
            try {
                request.close();
            } catch (IOException ex) {
                LOG.warn("I/O Exception");
            }
        }
    }

    return puid;
}

From source file:architecture.ee.jdbc.sqlquery.factory.impl.AbstractSqlQueryFactory.java

public boolean fileDeleted(File file) {
    if (configuration.isResourceLoaded(file.toURI().toString())) {
        configuration.removeUriNamespace(file.toURI().toString(), true);
        configuration.removeLoadedResource(file.toURI().toString());
    }/*from w ww  .j  a  v  a 2s.  c  o m*/
    // DeployedInfo di =
    deployments.remove(file.toURI());
    // ToDo more ...
    return true;
}

From source file:com.datatorrent.stram.client.StramClientUtils.java

public static void copyFromLocalFileNoChecksum(FileSystem fs, File fromLocal, Path toDFS) throws IOException {
    // This is to void the hadoop FileSystem API to perform checksum on the local file
    // This "feature" has caused a lot of headache because the local file can be copied from HDFS and modified,
    // and the checksum will fail if the file is again copied to HDFS
    try {/*from   w ww  . j  a  va 2 s  .  c  om*/
        new File(fromLocal.getParentFile(), "." + fromLocal.getName() + ".crc").delete();
    } catch (Exception ex) {
        // ignore
    }
    fs.copyFromLocalFile(new Path(fromLocal.toURI()), toDFS);
}

From source file:com.searchbox.framework.service.DirectoryService.java

public String getApplicationRelativePath(File file) {
    try {// ww w.j av a  2s .  c o m
        LOGGER.debug("Application absolutePath: " + context.getResource("").getFile().getAbsolutePath());
        String relative = context.getResource("").getFile().toURI().relativize(file.toURI()).getPath();
        return relative;
    } catch (IOException e) {
        LOGGER.error("Could not get application-relative path in directoryService", e);
    }
    return null;
}

From source file:architecture.ee.jdbc.sqlquery.factory.impl.AbstractSqlQueryFactory.java

public String fileCreated(File file) {
    try {/*from   w  w w . j  av a  2 s. co  m*/
        URI uri = file.toURI();
        if (deployments.containsKey(uri)) {
            DeployedInfo di = deployments.get(uri);
            if (di.timestamp == file.lastModified()) {
                return "";
            }
        } else {
            buildSqlFromInputStream(new FileInputStream(file), configuration);
            DeployedInfo di = new DeployedInfo(file.toURI(), System.currentTimeMillis());
            di.timestamp = file.lastModified();
            deployments.put(di.uri, di);
        }
    } catch (FileNotFoundException e) {

    }
    return "success";
}

From source file:cross.io.InputDataFactory.java

@Override
public TupleND<IFileFragment> prepareInputData(String[] input) {
    if (input == null || input.length == 0) {
        throw new ExitVmException("No input data given, aborting!");
    }//  ww  w .  j  a v a 2s . c o m
    log.info("Preparing input data!");
    log.debug("Received paths: {}", Arrays.toString(input));
    this.initialFiles = new ArrayList<>();
    for (String s : input) {
        File inputFile = new File(s);
        URI uri = null;
        if (inputFile.isFile() && inputFile.exists()) {
            uri = inputFile.toURI();
        } else {
            uri = URI.create(FileTools.escapeUri(s));
        }
        if (uri.getScheme() != null) {
            this.initialFiles.add(new FileFragment(uri));
        } else {
            for (File f : getInputFiles(new String[] { s })) {
                log.info("Adding file {}", f.getAbsolutePath());
                initialFiles.add(new FileFragment(f.toURI()));
            }
        }
    }

    if (initialFiles.isEmpty()) {
        throw new ExitVmException("Could not create input data for files " + Arrays.toString(input));
    }
    return new TupleND<>(initialFiles);
}