Example usage for java.io FileNotFoundException getCause

Introduction

In this page you can find the example usage for java.io FileNotFoundException getCause.

Prototype

public synchronized Throwable getCause() 

Source Link

Document

Returns the cause of this throwable or null if the cause is nonexistent or unknown.

Usage

From source file:com.aliyun.odps.mapred.cli.Cli.java

public static void main(String[] args) {
    SessionState ss = SessionState.get();
    OptionParser parser = new OptionParser(ss);
    try {// w w  w .  j a  v a  2s .com
        parser.parse(args);
    } catch (FileNotFoundException e) {
        System.err.println(e.getMessage());
        System.exit(-1);
    } catch (ClassNotFoundException e) {
        System.err.println("Class not found:" + e.getMessage());
        System.exit(-1);
    } catch (ParseException e) {
        System.err.println(e.getMessage());
        parser.usage();
        System.exit(-1);
    } catch (OdpsException e) {
        System.err.println(e.getMessage());
        System.exit(-1);
    }

    try {
        Method main = parser.getMainClass().getMethod("main", String[].class);
        main.invoke(null, (Object) parser.getArguments());
    } catch (InvocationTargetException e) {
        Throwable t = e.getCause();
        if (t != null && t instanceof OdpsException) {
            OdpsException ex = (OdpsException) t;
            System.err.println(ex.getErrorCode() + ":" + ex.getMessage());
            System.exit(-1);
        } else {
            throw new RuntimeException("Unknown error", e);
        }
    } catch (Exception e) {
        throw new RuntimeException(e);
    }
}

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From source file:de.tudarmstadt.ukp.dariah.pipeline.RunPipeline.java

public static void main(String[] args) {

    Date startDate = new Date();

    PrintStream ps;/*from   www.j a  v  a2s  .  c  o  m*/
    try {
        ps = new PrintStream("error.log");
        System.setErr(ps);
    } catch (FileNotFoundException e) {
        System.out.println("Errors cannot be redirected");
    }

    try {
        if (!parseArgs(args)) {
            System.out.println("Usage: java -jar pipeline.jar -help");
            System.out.println("Usage: java -jar pipeline.jar -input <Input File> -output <Output Folder>");
            System.out.println(
                    "Usage: java -jar pipeline.jar -config <Config File> -input <Input File> -output <Output Folder>");
            return;
        }
    } catch (ParseException e) {
        e.printStackTrace();
        System.out.println(
                "Error when parsing command line arguments. Use\njava -jar pipeline.jar -help\n to get further information");
        System.out.println("See error.log for further details");
        return;
    }

    LinkedList<String> configFiles = new LinkedList<>();

    String configFolder = "configs/";
    configFiles.add(configFolder + "default.properties");

    //Language dependent properties file
    String path = configFolder + "default_" + optLanguage + ".properties";
    File f = new File(path);
    if (f.exists()) {
        configFiles.add(path);
    } else {
        System.out.println("Language config file: " + path + " not found");
    }

    String[] configFileArg = new String[0];
    for (int i = 0; i < args.length - 1; i++) {
        if (args[i].equals("-config")) {
            configFileArg = args[i + 1].split("[,;]");
            break;
        }
    }

    for (String configFile : configFileArg) {

        f = new File(configFile);
        if (f.exists()) {
            configFiles.add(configFile);
        } else {
            //Check in configs folder
            path = configFolder + configFile;

            f = new File(path);
            if (f.exists()) {
                configFiles.add(path);
            } else {
                System.out.println("Config file: " + configFile + " not found");
                return;
            }
        }
    }

    for (String configFile : configFiles) {
        try {
            parseConfig(configFile);
        } catch (Exception e) {
            e.printStackTrace();
            System.out.println("Exception when parsing config file: " + configFile);
            System.out.println("See error.log for further details");
        }
    }

    printConfiguration(configFiles.toArray(new String[0]));

    try {

        // Read in the input files
        String defaultFileExtension = (optReader == ReaderType.XML) ? ".xml" : ".txt";

        GlobalFileStorage.getInstance().readFilePaths(optInput, defaultFileExtension, optOutput, optResume);

        System.out.println("Process " + GlobalFileStorage.getInstance().size() + " files");

        CollectionReaderDescription reader;

        if (optReader == ReaderType.XML) {
            reader = createReaderDescription(XmlReader.class, XmlReader.PARAM_LANGUAGE, optLanguage);
        } else {
            reader = createReaderDescription(TextReaderWithInfo.class, TextReaderWithInfo.PARAM_LANGUAGE,
                    optLanguage);
        }

        AnalysisEngineDescription paragraph = createEngineDescription(ParagraphSplitter.class,
                ParagraphSplitter.PARAM_SPLIT_PATTERN,
                (optParagraphSingleLineBreak) ? ParagraphSplitter.SINGLE_LINE_BREAKS_PATTERN
                        : ParagraphSplitter.DOUBLE_LINE_BREAKS_PATTERN);

        AnalysisEngineDescription seg = createEngineDescription(optSegmenterCls, optSegmenterArguments);

        AnalysisEngineDescription paragraphSentenceCorrector = createEngineDescription(
                ParagraphSentenceCorrector.class);

        AnalysisEngineDescription frenchQuotesSeg = createEngineDescription(PatternBasedTokenSegmenter.class,
                PatternBasedTokenSegmenter.PARAM_PATTERNS, "+|[]");

        AnalysisEngineDescription quotesSeg = createEngineDescription(PatternBasedTokenSegmenter.class,
                PatternBasedTokenSegmenter.PARAM_PATTERNS, "+|[\"\"]");

        AnalysisEngineDescription posTagger = createEngineDescription(optPOSTaggerCls, optPOSTaggerArguments);

        AnalysisEngineDescription lemma = createEngineDescription(optLemmatizerCls, optLemmatizerArguments);

        AnalysisEngineDescription chunker = createEngineDescription(optChunkerCls, optChunkerArguments);

        AnalysisEngineDescription morph = createEngineDescription(optMorphTaggerCls, optMorphTaggerArguments);

        AnalysisEngineDescription hyphenation = createEngineDescription(optHyphenationCls,
                optHyphenationArguments);

        AnalysisEngineDescription depParser = createEngineDescription(optDependencyParserCls,
                optDependencyParserArguments);

        AnalysisEngineDescription constituencyParser = createEngineDescription(optConstituencyParserCls,
                optConstituencyParserArguments);

        AnalysisEngineDescription ner = createEngineDescription(optNERCls, optNERArguments);

        AnalysisEngineDescription directSpeech = createEngineDescription(DirectSpeechAnnotator.class,
                DirectSpeechAnnotator.PARAM_START_QUOTE, optStartQuote);

        AnalysisEngineDescription srl = createEngineDescription(optSRLCls, optSRLArguments); //Requires DKPro 1.8.0   

        AnalysisEngineDescription coref = createEngineDescription(optCorefCls, optCorefArguments); //StanfordCoreferenceResolver.PARAM_POSTPROCESSING, true

        AnalysisEngineDescription writer = createEngineDescription(DARIAHWriter.class,
                DARIAHWriter.PARAM_TARGET_LOCATION, optOutput, DARIAHWriter.PARAM_OVERWRITE, true);

        AnalysisEngineDescription annWriter = createEngineDescription(AnnotationWriter.class);

        AnalysisEngineDescription noOp = createEngineDescription(NoOpAnnotator.class);

        System.out.println("\nStart running the pipeline (this may take a while)...");

        while (!GlobalFileStorage.getInstance().isEmpty()) {
            try {
                SimplePipeline.runPipeline(reader, paragraph, (optSegmenter) ? seg : noOp,
                        paragraphSentenceCorrector, frenchQuotesSeg, quotesSeg,
                        (optPOSTagger) ? posTagger : noOp, (optLemmatizer) ? lemma : noOp,
                        (optChunker) ? chunker : noOp, (optMorphTagger) ? morph : noOp,
                        (optHyphenation) ? hyphenation : noOp, directSpeech,
                        (optDependencyParser) ? depParser : noOp,
                        (optConstituencyParser) ? constituencyParser : noOp, (optNER) ? ner : noOp,
                        (optSRL) ? srl : noOp, //Requires DKPro 1.8.0
                        (optCoref) ? coref : noOp, writer
                //                  ,annWriter
                );
            } catch (OutOfMemoryError e) {
                System.out.println("Out of Memory at file: "
                        + GlobalFileStorage.getInstance().getLastPolledFile().getAbsolutePath());
            }
        }

        Date enddate = new Date();
        double duration = (enddate.getTime() - startDate.getTime()) / (1000 * 60.0);

        System.out.println("---- DONE -----");
        System.out.printf("All files processed in %.2f minutes", duration);
    } catch (ResourceInitializationException e) {
        System.out.println("Error when initializing the pipeline.");
        if (e.getCause() instanceof FileNotFoundException) {
            System.out.println("File not found. Maybe the input / output path is incorrect?");
            System.out.println(e.getCause().getMessage());
        }

        e.printStackTrace();
        System.out.println("See error.log for further details");
    } catch (UIMAException e) {
        e.printStackTrace();
        System.out.println("Error in the pipeline.");
        System.out.println("See error.log for further details");
    } catch (IOException e) {
        e.printStackTrace();
        System.out
                .println("Error while reading or writing to the file system. Maybe some paths are incorrect?");
        System.out.println("See error.log for further details");
    }

}

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From source file:com.hazelcast.qasonar.utils.WhiteListBuilder.java

private static JsonArray getJsonArrayFromFile(String propertyFileName) {
    BufferedReader bufferedReader = null;
    FileReader fileReader = null;
    try {/*from   w  w w  .  j  a  v  a  2  s  .  c o m*/
        fileReader = new FileReader(propertyFileName);
        bufferedReader = new BufferedReader(fileReader);

        Gson gson = new Gson();
        return gson.fromJson(bufferedReader, JsonArray.class);
    } catch (FileNotFoundException e) {
        throw new IllegalArgumentException("Could not read whitelist from file " + propertyFileName,
                e.getCause());
    } finally {
        closeQuietly(fileReader);
        closeQuietly(bufferedReader);
    }
}

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From source file:com.idiro.utils.db.mysql.MySqlUtils.java

public static boolean changeFormatAfterExport(File in, File out, char delimiter, Collection<String> header,
        Collection<String> quotes) {
    //We expect that in is a csv file and out a file
    boolean ok = true;
    FileChecker fChIn = new FileChecker(in), fChOut = new FileChecker(out);

    if (!fChIn.isFile()) {
        logger.error(fChIn.getFilename() + " is not a directory or does not exist");
        return false;
    }/*from  w  w  w  .ja v a2s  . c o  m*/

    if (fChOut.exists()) {
        if (fChOut.isDirectory()) {
            logger.error(fChOut.getFilename() + " is a directory");
            return false;
        }
        logger.warn(fChOut.getFilename() + " already exists, it will be removed");
        String out_str = out.getAbsolutePath();
        out.delete();
        out = new File(out_str);
    }

    BufferedWriter bw = null;
    BufferedReader br = null;

    try {
        bw = new BufferedWriter(new FileWriter(out));

        logger.debug("read the file" + in.getAbsolutePath());
        br = new BufferedReader(new FileReader(in));
        String strLine;
        if (header != null && !header.isEmpty()) {
            Iterator<String> it = header.iterator();
            String headerLine = it.next();
            while (it.hasNext()) {
                headerLine += delimiter + it.next();
            }
            bw.write(headerLine + "\n");
        }

        //Read File Line By Line
        while ((strLine = br.readLine()) != null) {
            bw.write(DataFileUtils.addQuotesToLine(
                    DataFileUtils.getCleanLine(strLine.replace(',', delimiter), delimiter, delimiter), quotes,
                    delimiter) + "\n");
        }
        br.close();

        bw.close();
    } catch (FileNotFoundException e1) {
        logger.error(e1.getCause() + " " + e1.getMessage());
        logger.error("Fail to read " + in.getAbsolutePath());
        ok = false;
    } catch (IOException e1) {
        logger.error("Error writting, reading on the filesystem from the directory" + fChIn.getFilename()
                + " to the file " + fChOut.getFilename());
        ok = false;
    }
    if (ok) {
        in.delete();
    }
    return ok;
}

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From source file:org.springframework.data.hadoop.pig.PigUtils.java

private static void registerScriptForPig07X(PigServer pig, InputStream in, Map<String, String> params)
        throws IOException {
    try {/*from  w  w  w  . j a  v a 2s. co m*/
        // transform the map type to list type which can been accepted by ParameterSubstitutionPreprocessor
        List<String> paramList = new ArrayList<String>();
        if (params != null) {
            for (Map.Entry<String, String> entry : params.entrySet()) {
                paramList.add(entry.getKey() + "=" + entry.getValue());
            }
        }

        // do parameter substitution
        ParameterSubstitutionPreprocessor psp = new ParameterSubstitutionPreprocessor(50);
        StringWriter writer = new StringWriter();
        psp.genSubstitutedFile(new BufferedReader(new InputStreamReader(in)), writer, null, null);

        GruntParser grunt = new GruntParser(new StringReader(writer.toString()));
        grunt.setInteractive(false);
        grunt.setParams(pig);
        grunt.parseStopOnError(true);
    } catch (FileNotFoundException e) {
        LogFactory.getLog(PigServer.class).error(e.getLocalizedMessage());
        throw new IOException(e.getCause());
    } catch (org.apache.pig.tools.pigscript.parser.ParseException e) {
        LogFactory.getLog(PigServer.class).error(e.getLocalizedMessage());
        throw new IOException(e.getCause());
    } catch (org.apache.pig.tools.parameters.ParseException e) {
        LogFactory.getLog(PigServer.class).error(e.getLocalizedMessage());
        throw new IOException(e.getCause());
    }
}

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From source file:epsi.i5.datamining.JsonBuilder.java

/**
 * This method return un DataEntity with only comment attribute filled from
 * the json file// ww  w . j  a v  a 2s  .co m
 *
 * @return
 */
public List<DataEntity> getSimpleCommentaires(File file) {
    List<DataEntity> listeCommentaires = new ArrayList();
    try {
        Object objFile = parser.parse(new FileReader(file.getAbsolutePath()));

        JSONArray jsonArray = (JSONArray) objFile;
        for (Object obj : jsonArray) {
            JSONObject jsonObject = (JSONObject) obj;
            DataEntity commentaire = new DataEntity();
            commentaire.setId(jsonObject.get("id"));
            commentaire.setCommentaires((String) jsonObject.get("commentaires"));

            listeCommentaires.add(commentaire);
        }
    } catch (FileNotFoundException e) {
        System.out.println("Une erreur est survenue lors de lecture du ficheir JSON");
        System.out.println("Cause : " + e.getCause());
        System.out.println("Message : " + e.getMessage());
    } catch (IOException | ParseException ex) {
        Logger.getLogger(JsonBuilder.class.getName()).log(Level.SEVERE, null, ex);
    }
    return listeCommentaires;
}

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From source file:org.dataone.proto.trove.mn.service.v1.impl.MNStorageImpl.java

@Override
public Identifier create(Identifier pid, InputStream object, SystemMetadata sysmeta)
        throws InvalidToken, ServiceFailure, NotAuthorized, IdentifierNotUnique, UnsupportedType,
        InsufficientResources, InvalidSystemMetadata, NotImplemented, InvalidRequest {
    try {/* w ww .  j  a  v a 2s .  c om*/
        File systemMetadata = new File(dataoneCacheDirectory + File.separator + "meta" + File.separator
                + EncodingUtilities.encodeUrlPathSegment(pid.getValue()));
        TypeMarshaller.marshalTypeToFile(sysmeta, systemMetadata.getAbsolutePath());

        if (systemMetadata.exists()) {
            systemMetadata.setLastModified(sysmeta.getDateSysMetadataModified().getTime());
        } else {
            throw new ServiceFailure("1190", "SystemMetadata not found on FileSystem after create");
        }
        File objectFile = new File(dataoneCacheDirectory + File.separator + "object" + File.separator
                + EncodingUtilities.encodeUrlPathSegment(pid.getValue()));
        if (!objectFile.exists() && objectFile.createNewFile()) {
            objectFile.setReadable(true);
            objectFile.setWritable(true);
            objectFile.setExecutable(false);
        }

        if (object != null) {
            FileOutputStream objectFileOutputStream = new FileOutputStream(objectFile);
            BufferedInputStream inputStream = new BufferedInputStream(object);
            byte[] barray = new byte[SIZE];
            int nRead = 0;

            while ((nRead = inputStream.read(barray, 0, SIZE)) != -1) {
                objectFileOutputStream.write(barray, 0, nRead);
            }
            objectFileOutputStream.flush();
            objectFileOutputStream.close();
            inputStream.close();
        }
    } catch (FileNotFoundException ex) {
        throw new ServiceFailure("1190", ex.getCause().toString() + ":" + ex.getMessage());
    } catch (IOException ex) {
        throw new ServiceFailure("1190", ex.getMessage());
    } catch (JiBXException ex) {
        throw new InvalidSystemMetadata("1180", ex.getMessage());
    }
    return pid;
}

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From source file:om.sstvencoder.MainActivity.java

private boolean handleIntent(Intent intent) {
    if (!isIntentTypeValid(intent.getType()) || !isIntentActionValid(intent.getAction()))
        return false;
    Uri uri = intent.hasExtra(Intent.EXTRA_STREAM) ? (Uri) intent.getParcelableExtra(Intent.EXTRA_STREAM)
            : intent.getData();//  w  w  w . ja  va2  s.  c  o  m
    if (uri != null) {
        try {
            ContentResolver resolver = getContentResolver();
            mCropView.setBitmapStream(resolver.openInputStream(uri));
            mCropView.rotateImage(getOrientation(resolver, uri));
            return true;
        } catch (FileNotFoundException ex) {
            if (ex.getCause() instanceof ErrnoException) {
                if (((ErrnoException) ex.getCause()).errno == OsConstants.EACCES) {
                    requestPermissions();
                    return false;
                }
            }
            String s = getString(R.string.load_img_err_title) + ": \n" + ex.getMessage();
            Toast.makeText(this, s, Toast.LENGTH_LONG).show();
        } catch (Exception ex) {
            String s = Utility.createMessage(ex) + "\n\n" + uri + "\n\n" + intent;
            showErrorMessage(getString(R.string.load_img_err_title), ex.getMessage(), s);
        }
    } else {
        String s = getString(R.string.load_img_err_txt_unsupported);
        showErrorMessage(getString(R.string.load_img_err_title), s, s + "\n\n" + intent);
    }
    return false;
}

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From source file:de.tudarmstadt.ukp.clarin.webanno.brat.ajax.controller.CasToBratJsonTest.java

/**
 * generate brat JSON data for the document
 *//* www  . j  a va  2 s.c  om*/
@Test
public void testGenerateBratJsonGetDocument() throws Exception {
    MappingJacksonHttpMessageConverter jsonConverter = new MappingJacksonHttpMessageConverter();
    String jsonFilePath = "target/test-output/output_cas_to_json_document.json";

    InputStream is = null;
    JCas jCas = null;
    try {
        // is = new
        // FileInputStream("src/test/resources/tcf04-karin-wl.xml");
        String path = "src/test/resources/";
        String file = "tcf04-karin-wl.xml";
        CAS cas = JCasFactory.createJCas().getCas();
        CollectionReader reader = CollectionReaderFactory.createReader(TcfReader.class,
                TcfReader.PARAM_SOURCE_LOCATION, path, TcfReader.PARAM_PATTERNS, new String[] { "[+]" + file });
        if (!reader.hasNext()) {
            throw new FileNotFoundException("Annotation file [" + file + "] not found in [" + path + "]");
        }
        reader.getNext(cas);
        jCas = cas.getJCas();

    } catch (FileNotFoundException ex) {
        LOG.info("The file specified not found " + ex.getCause());
    } catch (Exception ex) {
        LOG.info(ex);
    }

    List<String> tagSetNames = new ArrayList<String>();
    tagSetNames.add(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.POS);
    tagSetNames.add(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.DEPENDENCY);
    tagSetNames.add(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.NAMEDENTITY);
    tagSetNames.add(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.COREFERENCE);
    tagSetNames.add(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst.COREFRELTYPE);

    BratAnnotatorModel bratannotatorModel = new BratAnnotatorModel();
    bratannotatorModel.getPreferences().setWindowSize(10);
    bratannotatorModel.setSentenceAddress(BratAjaxCasUtil.getFirstSentenceAddress(jCas));
    bratannotatorModel.setLastSentenceAddress(BratAjaxCasUtil.getLastSentenceAddress(jCas));

    Sentence sentence = BratAjaxCasUtil.selectByAddr(jCas, Sentence.class,
            bratannotatorModel.getSentenceAddress());

    bratannotatorModel.setSentenceBeginOffset(sentence.getBegin());
    bratannotatorModel.setSentenceEndOffset(sentence.getEnd());

    Project project = new Project();
    bratannotatorModel.setProject(project);
    bratannotatorModel.setMode(Mode.ANNOTATION);

    GetDocumentResponse response = new GetDocumentResponse();
    response.setText(jCas.getDocumentText());

    SpanAdapter.renderTokenAndSentence(jCas, response, bratannotatorModel);

    /*      for (AnnotationLayer layer : bratannotatorModel.getAnnotationLayers()) {
    getAdapter(layer, annotationService).render(jCas,
            annotationService.listAnnotationFeature(layer), response,
            bratannotatorModel);
          }*/

    JSONUtil.generateJson(jsonConverter, response, new File(jsonFilePath));

    String reference = FileUtils.readFileToString(
            new File("src/test/resources/output_cas_to_json_document_expected.json"), "UTF-8");
    String actual = FileUtils.readFileToString(new File("target/test-output/output_cas_to_json_document.json"),
            "UTF-8");
    assertEquals(reference, actual);
}

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From source file:com.aleerant.tnssync.PropertiesHandler.java

private void getLdapOraProperties() throws AppException {
    String ldaporaFile = Paths.get(mTnsAdminPathString, APP_LDAPORA_FILENAME).toString();
    Properties ldapOraProperties = new Properties();
    try {/*from   w  w w  .j  a  v  a 2  s .  c  om*/
        ldapOraProperties.load(new FileInputStream(ldaporaFile));
    } catch (FileNotFoundException e) {
        throw new AppException(APP_LDAPORA_FILENAME + " file is missing (" + ldaporaFile + "), error message: "
                + e.getMessage() + ", caused by:" + e.getCause());
    } catch (IOException e) {
        throw new AppException("can not read " + APP_LDAPORA_FILENAME + " file (" + ldaporaFile
                + "), error message: " + e.getMessage() + ", caused by:" + e.getCause());
    }

    this.mDefaultAdminContext = ldapOraProperties.getProperty("DEFAULT_ADMIN_CONTEXT").replaceAll("[()\\s]",
            "");
    if (this.mDefaultAdminContext == null) {
        throw new IllegalArgumentException("Missing parameter: DEFAULT_ADMIN_CONTEXT");
    }
    this.mDirectoryServers = ldapOraProperties.getProperty("DIRECTORY_SERVERS", "").replaceAll("[()\\s]", "");
}

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