Example usage for java.io FileOutputStream close

List of usage examples for java.io FileOutputStream close

  1. HOME
  2. Java
  3. java
  4. java.io.*
  5. FileOutputStream
  6. close

Introduction

In this page you can find the example usage for java.io FileOutputStream close.

Prototype

public void close() throws IOException

Source Link

Document

Closes this file output stream and releases any system resources associated with this stream.

Usage

From source file:MainClass.java

public static void main(String[] args) {
    long[] primes = new long[] { 1, 2, 3, 5, 7 };
    File aFile = new File("C:/test/primes.txt");
    FileOutputStream outputFile = null;
    try {/* w w w  . j a  va 2 s .co m*/
        outputFile = new FileOutputStream(aFile);
    } catch (FileNotFoundException e) {
        e.printStackTrace(System.err);
    }
    FileChannel file = outputFile.getChannel();
    final int BUFFERSIZE = 100;
    ByteBuffer buf = ByteBuffer.allocate(BUFFERSIZE);
    DoubleBuffer doubleBuf = buf.asDoubleBuffer();
    buf.position(8);
    CharBuffer charBuf = buf.asCharBuffer();
    for (long prime : primes) {
        String primeStr = "prime = " + prime;
        doubleBuf.put(0, (double) primeStr.length());
        charBuf.put(primeStr);
        buf.position(2 * charBuf.position() + 8);
        LongBuffer longBuf = buf.asLongBuffer();
        longBuf.put(prime);
        buf.position(buf.position() + 8);
        buf.flip();
        try {
            file.write(buf);
        } catch (IOException e) {
            e.printStackTrace(System.err);
        }
        buf.clear();
        doubleBuf.clear();
        charBuf.clear();
    }
    try {
        System.out.println("File written is " + file.size() + "bytes.");
        outputFile.close();
    } catch (IOException e) {
        e.printStackTrace(System.err);
    }
}

From source file:es.cnio.bioinfo.bicycle.gatk.MethylationFilePair.java

public static void main(String[] args) throws IOException {
    File f = new File("/mnt/lacie15t/BACKUP/lipido/NGS/LISTER/REFERENCES/phageLambda_plus_hg18.fa.fai");
    RandomAccessFile ra = new RandomAccessFile(f, "rw");
    ra.getChannel().lock(0, Long.MAX_VALUE, false);

    //a// ww  w. jav  a  2  s .c om
    /*   ra.seek(0);
       ra.write("hello2\n".getBytes());   
       ra.close();
       */
    //b
    FileOutputStream fos = new FileOutputStream(f);
    fos.write("hello\n".getBytes());
    fos.close();

}

From source file:com.tremolosecurity.openunison.util.OpenUnisonUtils.java

public static void main(String[] args) throws Exception {

    logger = org.apache.logging.log4j.LogManager.getLogger(OpenUnisonUtils.class.getName());

    Options options = new Options();
    options.addOption("unisonXMLFile", true, "The full path to the Unison xml file");
    options.addOption("keystorePath", true, "The full path to the Unison keystore");
    options.addOption("chainName", true, "The name of the authentication chain");
    options.addOption("mechanismName", true, "The name of the authentication mechanism for SAML2");
    options.addOption("idpName", true, "The name of the identity provider application");
    options.addOption("pathToMetaData", true, "The full path to the saml2 metadata file");
    options.addOption("createDefault", false, "If set, add default parameters");
    options.addOption("action", true,
            "export-sp-metadata, import-sp-metadata, export-secretkey, print-secretkey, import-idp-metadata, export-idp-metadata, clear-dlq, import-secretkey, create-secretkey");
    options.addOption("urlBase", true, "Base URL, no URI; https://host:port");
    options.addOption("alias", true, "Key alias");
    options.addOption("newKeystorePath", true, "Path to the new keystore");
    options.addOption("newKeystorePassword", true, "Password for the new keystore");
    options.addOption("help", false, "Prints this message");
    options.addOption("signMetadataWithKey", true, "Signs the metadata with the specified key");
    options.addOption("dlqName", true, "The name of the dead letter queue");
    options.addOption("upgradeFrom106", false, "Updates workflows from 1.0.6");
    options.addOption("secretkey", true, "base64 encoded secret key");
    options.addOption("envFile", true, "Environment variables for parmaterized configs");

    CommandLineParser parser = new DefaultParser();
    CommandLine cmd = parser.parse(options, args, true);

    if (args.length == 0 || cmd.hasOption("help")) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp("OpenUnisonUtils", options);
    }/*from w w w. ja  v a 2 s . co  m*/

    logger.info("Loading Unison Configuration");
    String unisonXMLFile = loadOption(cmd, "unisonXMLFile", options);
    TremoloType ttRead = loadTremoloType(unisonXMLFile, cmd, options);

    String action = loadOption(cmd, "action", options);
    TremoloType ttWrite = null;
    if (action.equalsIgnoreCase("import-sp-metadata") || action.equalsIgnoreCase("import-idp-metadata")) {
        ttWrite = loadTremoloType(unisonXMLFile);
    }

    logger.info("Configuration loaded");

    logger.info("Loading the keystore...");
    String ksPath = loadOption(cmd, "keystorePath", options);

    KeyStore ks = loadKeyStore(ksPath, ttRead);

    logger.info("...loaded");

    if (action.equalsIgnoreCase("import-sp-metadata")) {

        importMetaData(options, cmd, unisonXMLFile, ttRead, ttWrite, ksPath, ks);
    } else if (action.equalsIgnoreCase("export-sp-metadata")) {
        exportSPMetaData(options, cmd, ttRead, ks);

    } else if (action.equalsIgnoreCase("print-secretkey")) {
        printSecreyKey(options, cmd, ttRead, ks);
    } else if (action.equalsIgnoreCase("import-secretkey")) {
        importSecreyKey(options, cmd, ttRead, ks, ksPath);
    } else if (action.equalsIgnoreCase("create-secretkey")) {
        Security.addProvider(new BouncyCastleProvider());
        logger.info("Creating AES-256 secret key");
        String alias = loadOption(cmd, "alias", options);
        logger.info("Alias : '" + alias + "'");
        KeyGenerator kg = KeyGenerator.getInstance("AES", "BC");
        kg.init(256, new SecureRandom());
        SecretKey sk = kg.generateKey();
        ks.setKeyEntry(alias, sk, ttRead.getKeyStorePassword().toCharArray(), null);
        logger.info("Saving key");
        ks.store(new FileOutputStream(ksPath), ttRead.getKeyStorePassword().toCharArray());
        logger.info("Finished");
    } else if (action.equalsIgnoreCase("export-secretkey")) {
        logger.info("Export Secret Key");

        logger.info("Loading key");
        String alias = loadOption(cmd, "alias", options);
        SecretKey key = (SecretKey) ks.getKey(alias, ttRead.getKeyStorePassword().toCharArray());
        logger.info("Loading new keystore path");
        String pathToNewKeystore = loadOption(cmd, "newKeystorePath", options);
        logger.info("Loading new keystore password");
        String ksPassword = loadOption(cmd, "newKeystorePassword", options);

        KeyStore newKS = KeyStore.getInstance("PKCS12");
        newKS.load(null, ttRead.getKeyStorePassword().toCharArray());
        newKS.setKeyEntry(alias, key, ksPassword.toCharArray(), null);
        newKS.store(new FileOutputStream(pathToNewKeystore), ksPassword.toCharArray());
        logger.info("Exported");
    } else if (action.equalsIgnoreCase("import-idp-metadata")) {
        importIdpMetadata(options, cmd, unisonXMLFile, ttRead, ttWrite, ksPath, ks);

    } else if (action.equalsIgnoreCase("export-idp-metadata")) {
        exportIdPMetadata(options, cmd, ttRead, ks);
    } else if (action.equalsIgnoreCase("clear-dlq")) {
        logger.info("Getting the DLQ Name...");
        String dlqName = loadOption(cmd, "dlqName", options);
        QueUtils.emptyDLQ(ttRead, dlqName);
    } else if (action.equalsIgnoreCase("upgradeFrom106")) {
        logger.info("Upgrading OpenUnison's configuration from 1.0.6");

        String backupFileName = unisonXMLFile + ".bak";

        logger.info("Backing up to '" + backupFileName + "'");

        BufferedReader in = new BufferedReader(new InputStreamReader(new FileInputStream(unisonXMLFile)));
        PrintWriter out = new PrintWriter(new FileOutputStream(backupFileName));
        String line = null;
        while ((line = in.readLine()) != null) {
            out.println(line);
        }
        out.flush();
        out.close();
        in.close();

        ByteArrayOutputStream bout = new ByteArrayOutputStream();
        AddChoiceToTasks.convert(new FileInputStream(unisonXMLFile), bout);
        FileOutputStream fsout = new FileOutputStream(unisonXMLFile);
        fsout.write(bout.toByteArray());
        fsout.flush();
        fsout.close();

    }

}

From source file:Gen.java

public static void main(String[] args) throws Exception {

    try {/*  w  w  w .  j  a v a 2 s.c  o  m*/

        File[] files = null;
        if (System.getProperty("dir") != null && !System.getProperty("dir").equals("")) {
            files = new File(System.getProperty("dir")).listFiles(new FilenameFilter() {
                public boolean accept(File dir, String name) {
                    return name.toUpperCase().endsWith(".XML");
                };
            });
        } else {
            String fileName = System.getProperty("file") != null && !System.getProperty("file").equals("")
                    ? System.getProperty("file")
                    : "rjmap.xml";
            files = new File[] { new File(fileName) };
        }

        log.info("files : " + Arrays.toString(files));

        if (files == null || files.length == 0) {
            log.info("no files to parse");
            System.exit(0);
        }

        boolean formatsource = true;
        if (System.getProperty("formatsource") != null && !System.getProperty("formatsource").equals("")
                && System.getProperty("formatsource").equalsIgnoreCase("false")) {
            formatsource = false;
        }

        GEN_ROOT = System.getProperty("outputdir");

        if (GEN_ROOT == null || GEN_ROOT.equals("")) {
            GEN_ROOT = new File(files[0].getAbsolutePath()).getParent() + FILE_SEPARATOR + "distrib";
        }

        GEN_ROOT = new File(GEN_ROOT).getAbsolutePath().replace('\\', '/');
        if (GEN_ROOT.endsWith("/"))
            GEN_ROOT = GEN_ROOT.substring(0, GEN_ROOT.length() - 1);

        System.out.println("GEN ROOT:" + GEN_ROOT);

        MAPPING_JAR_NAME = System.getProperty("mappingjar") != null
                && !System.getProperty("mappingjar").equals("") ? System.getProperty("mappingjar")
                        : "mapping.jar";
        if (!MAPPING_JAR_NAME.endsWith(".jar"))
            MAPPING_JAR_NAME += ".jar";

        GEN_ROOT_SRC = GEN_ROOT + FILE_SEPARATOR + "src";
        GEN_ROOT_LIB = GEN_ROOT + FILE_SEPARATOR + "";

        DocumentBuilderFactory domFactory = DocumentBuilderFactory.newInstance();
        domFactory.setNamespaceAware(true);
        domFactory.setValidating(false);
        DocumentBuilder documentBuilder = domFactory.newDocumentBuilder();

        for (int f = 0; f < files.length; ++f) {
            log.info("parsing file : " + files[f]);
            Document document = documentBuilder.parse(files[f]);

            Vector<Node> initNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "scripts"), "initScript",
                    initNodes);
            for (int i = 0; i < initNodes.size(); ++i) {
                NamedNodeMap attrs = initNodes.elementAt(i).getAttributes();
                boolean embed = attrs.getNamedItem("embed") != null
                        && attrs.getNamedItem("embed").getNodeValue().equalsIgnoreCase("true");
                StringBuffer vbuffer = new StringBuffer();
                if (attrs.getNamedItem("inline") != null) {
                    vbuffer.append(attrs.getNamedItem("inline").getNodeValue());
                    vbuffer.append('\n');
                } else {
                    String fname = attrs.getNamedItem("name").getNodeValue();
                    if (!fname.startsWith("\\") && !fname.startsWith("/") && fname.toCharArray()[1] != ':') {
                        String path = files[f].getAbsolutePath();
                        path = path.substring(0, path.lastIndexOf(FILE_SEPARATOR));
                        fname = new File(path + FILE_SEPARATOR + fname).getCanonicalPath();
                    }
                    vbuffer.append(Utils.getFileAsStringBuffer(fname));
                }
                initScriptBuffer.append(vbuffer);
                if (embed)
                    embedScriptBuffer.append(vbuffer);
            }

            Vector<Node> packageInitNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "scripts"), "packageScript",
                    packageInitNodes);
            for (int i = 0; i < packageInitNodes.size(); ++i) {
                NamedNodeMap attrs = packageInitNodes.elementAt(i).getAttributes();
                String packageName = attrs.getNamedItem("package").getNodeValue();

                if (packageName.equals(""))
                    packageName = "rGlobalEnv";

                if (!packageName.endsWith("Function"))
                    packageName += "Function";
                if (packageEmbedScriptHashMap.get(packageName) == null) {
                    packageEmbedScriptHashMap.put(packageName, new StringBuffer());
                }
                StringBuffer vbuffer = packageEmbedScriptHashMap.get(packageName);

                // if (!packageName.equals("rGlobalEnvFunction")) {
                // vbuffer.append("library("+packageName.substring(0,packageName.lastIndexOf("Function"))+")\n");
                // }

                if (attrs.getNamedItem("inline") != null) {
                    vbuffer.append(attrs.getNamedItem("inline").getNodeValue() + "\n");
                    initScriptBuffer.append(attrs.getNamedItem("inline").getNodeValue() + "\n");
                } else {
                    String fname = attrs.getNamedItem("name").getNodeValue();
                    if (!fname.startsWith("\\") && !fname.startsWith("/") && fname.toCharArray()[1] != ':') {
                        String path = files[f].getAbsolutePath();
                        path = path.substring(0, path.lastIndexOf(FILE_SEPARATOR));
                        fname = new File(path + FILE_SEPARATOR + fname).getCanonicalPath();
                    }
                    StringBuffer fileBuffer = Utils.getFileAsStringBuffer(fname);
                    vbuffer.append(fileBuffer);
                    initScriptBuffer.append(fileBuffer);
                }
            }

            Vector<Node> functionsNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "functions"), "function",
                    functionsNodes);
            for (int i = 0; i < functionsNodes.size(); ++i) {
                NamedNodeMap attrs = functionsNodes.elementAt(i).getAttributes();
                String functionName = attrs.getNamedItem("name").getNodeValue();

                boolean forWeb = attrs.getNamedItem("forWeb") != null
                        && attrs.getNamedItem("forWeb").getNodeValue().equalsIgnoreCase("true");

                String signature = (attrs.getNamedItem("signature") == null ? ""
                        : attrs.getNamedItem("signature").getNodeValue() + ",");
                String renameTo = (attrs.getNamedItem("renameTo") == null ? null
                        : attrs.getNamedItem("renameTo").getNodeValue());

                HashMap<String, FAttributes> sigMap = Globals._functionsToPublish.get(functionName);

                if (sigMap == null) {
                    sigMap = new HashMap<String, FAttributes>();
                    Globals._functionsToPublish.put(functionName, sigMap);

                    if (attrs.getNamedItem("returnType") == null) {
                        _functionsVector.add(new String[] { functionName });
                    } else {
                        _functionsVector.add(
                                new String[] { functionName, attrs.getNamedItem("returnType").getNodeValue() });
                    }

                }

                sigMap.put(signature, new FAttributes(renameTo, forWeb));

                if (forWeb)
                    _webPublishingEnabled = true;

            }

            if (System.getProperty("targetjdk") != null && !System.getProperty("targetjdk").equals("")
                    && System.getProperty("targetjdk").compareTo("1.5") < 0) {
                if (_webPublishingEnabled || (System.getProperty("ws.r.api") != null
                        && System.getProperty("ws.r.api").equalsIgnoreCase("true"))) {
                    log.info("be careful, web publishing disabled beacuse target JDK<1.5");
                }
                _webPublishingEnabled = false;
            } else {

                if (System.getProperty("ws.r.api") == null || System.getProperty("ws.r.api").equals("")
                        || !System.getProperty("ws.r.api").equalsIgnoreCase("false")) {
                    _webPublishingEnabled = true;
                }

                if (_webPublishingEnabled && System.getProperty("java.version").compareTo("1.5") < 0) {
                    log.info("be careful, web publishing disabled beacuse a JDK<1.5 is in use");
                    _webPublishingEnabled = false;
                }
            }

            Vector<Node> s4Nodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "s4classes"), "class", s4Nodes);

            if (s4Nodes.size() > 0) {
                String formalArgs = "";
                String signature = "";
                for (int i = 0; i < s4Nodes.size(); ++i) {
                    NamedNodeMap attrs = s4Nodes.elementAt(i).getAttributes();
                    String s4Name = attrs.getNamedItem("name").getNodeValue();
                    formalArgs += "p" + i + (i == s4Nodes.size() - 1 ? "" : ",");
                    signature += "'" + s4Name + "'" + (i == s4Nodes.size() - 1 ? "" : ",");
                }
                String genBeansScriptlet = "setGeneric('" + PUBLISH_S4_HEADER + "', function(" + formalArgs
                        + ") standardGeneric('" + PUBLISH_S4_HEADER + "'));" + "setMethod('" + PUBLISH_S4_HEADER
                        + "', signature(" + signature + ") , function(" + formalArgs + ") {   })";
                initScriptBuffer.append(genBeansScriptlet);
                _functionsVector.add(new String[] { PUBLISH_S4_HEADER, "numeric" });
            }

        }

        if (!new File(GEN_ROOT_LIB).exists())
            regenerateDir(GEN_ROOT_LIB);
        else {
            clean(GEN_ROOT_LIB, true);
        }

        for (int i = 0; i < rwebservicesScripts.length; ++i)
            DirectJNI.getInstance().getRServices().sourceFromResource(rwebservicesScripts[i]);

        String lastStatus = DirectJNI.getInstance().runR(new ExecutionUnit() {
            public void run(Rengine e) {
                DirectJNI.getInstance().toggleMarker();
                DirectJNI.getInstance().sourceFromBuffer(initScriptBuffer.toString());
                log.info(" init  script status : " + DirectJNI.getInstance().cutStatusSinceMarker());

                for (int i = 0; i < _functionsVector.size(); ++i) {

                    String[] functionPair = _functionsVector.elementAt(i);
                    log.info("dealing with : " + functionPair[0]);

                    regenerateDir(GEN_ROOT_SRC);

                    String createMapStr = "createMap(";
                    boolean isGeneric = e.rniGetBoolArrayI(
                            e.rniEval(e.rniParse("isGeneric(\"" + functionPair[0] + "\")", 1), 0))[0] == 1;

                    log.info("is Generic : " + isGeneric);
                    if (isGeneric) {
                        createMapStr += functionPair[0];
                    } else {
                        createMapStr += "\"" + functionPair[0] + "\"";
                    }
                    createMapStr += ", outputDirectory=\"" + GEN_ROOT_SRC
                            .substring(0, GEN_ROOT_SRC.length() - "/src".length()).replace('\\', '/') + "\"";
                    createMapStr += ", typeMode=\"robject\"";
                    createMapStr += (functionPair.length == 1 || functionPair[1] == null
                            || functionPair[1].trim().equals("") ? ""
                                    : ", S4DefaultTypedSig=TypedSignature(returnType=\"" + functionPair[1]
                                            + "\")");
                    createMapStr += ")";

                    log.info("------------------------------------------");
                    log.info("-- createMapStr=" + createMapStr);
                    DirectJNI.getInstance().toggleMarker();
                    e.rniEval(e.rniParse(createMapStr, 1), 0);
                    String createMapStatus = DirectJNI.getInstance().cutStatusSinceMarker();
                    log.info(" createMap status : " + createMapStatus);
                    log.info("------------------------------------------");

                    deleteDir(GEN_ROOT_SRC + "/org/kchine/r/rserviceJms");
                    compile(GEN_ROOT_SRC);
                    jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar", null);

                    URL url = null;
                    try {
                        url = new URL(
                                "jar:file:" + (GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar")
                                        .replace('\\', '/') + "!/");
                    } catch (Exception ex) {
                        ex.printStackTrace();
                    }
                    DirectJNI.generateMaps(url, true);
                }

            }
        });

        log.info(lastStatus);

        log.info(DirectJNI._rPackageInterfacesHash);
        regenerateDir(GEN_ROOT_SRC);
        for (int i = 0; i < _functionsVector.size(); ++i) {
            unjar(GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar", GEN_ROOT_SRC);
        }

        regenerateRPackageClass(true);

        generateS4BeanRef();

        if (formatsource)
            applyJalopy(GEN_ROOT_SRC);

        compile(GEN_ROOT_SRC);

        for (String k : DirectJNI._rPackageInterfacesHash.keySet()) {
            Rmic rmicTask = new Rmic();
            rmicTask.setProject(_project);
            rmicTask.setTaskName("rmic_packages");
            rmicTask.setClasspath(new Path(_project, GEN_ROOT_SRC));
            rmicTask.setBase(new File(GEN_ROOT_SRC));
            rmicTask.setClassname(k + "ImplRemote");
            rmicTask.init();
            rmicTask.execute();
        }

        // DirectJNI._rPackageInterfacesHash=new HashMap<String,
        // Vector<Class<?>>>();
        // DirectJNI._rPackageInterfacesHash.put("org.bioconductor.packages.rGlobalEnv.rGlobalEnvFunction",new
        // Vector<Class<?>>());

        if (_webPublishingEnabled) {

            jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar", null);
            URL url = new URL(
                    "jar:file:" + (GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar").replace('\\', '/') + "!/");
            ClassLoader cl = new URLClassLoader(new URL[] { url }, Globals.class.getClassLoader());

            for (String className : DirectJNI._rPackageInterfacesHash.keySet()) {
                if (cl.loadClass(className + "Web").getDeclaredMethods().length == 0)
                    continue;
                log.info("######## " + className);

                WsGen wsgenTask = new WsGen();
                wsgenTask.setProject(_project);
                wsgenTask.setTaskName("wsgen");

                FileSet rjb_fileSet = new FileSet();
                rjb_fileSet.setProject(_project);
                rjb_fileSet.setDir(new File("."));
                rjb_fileSet.setIncludes("RJB.jar");

                DirSet src_dirSet = new DirSet();
                src_dirSet.setDir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                Path classPath = new Path(_project);
                classPath.addFileset(rjb_fileSet);
                classPath.addDirset(src_dirSet);
                wsgenTask.setClasspath(classPath);
                wsgenTask.setKeep(true);
                wsgenTask.setDestdir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                wsgenTask.setResourcedestdir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                wsgenTask.setSei(className + "Web");

                wsgenTask.init();
                wsgenTask.execute();
            }

            new File(GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar").delete();

        }

        embedRScripts();

        HashMap<String, String> marker = new HashMap<String, String>();
        marker.put("RJBMAPPINGJAR", "TRUE");

        Properties props = new Properties();
        props.put("PACKAGE_NAMES", PoolUtils.objectToHex(DirectJNI._packageNames));
        props.put("S4BEANS_MAP", PoolUtils.objectToHex(DirectJNI._s4BeansMapping));
        props.put("S4BEANS_REVERT_MAP", PoolUtils.objectToHex(DirectJNI._s4BeansMappingRevert));
        props.put("FACTORIES_MAPPING", PoolUtils.objectToHex(DirectJNI._factoriesMapping));
        props.put("S4BEANS_HASH", PoolUtils.objectToHex(DirectJNI._s4BeansHash));
        props.put("R_PACKAGE_INTERFACES_HASH", PoolUtils.objectToHex(DirectJNI._rPackageInterfacesHash));
        props.put("ABSTRACT_FACTORIES", PoolUtils.objectToHex(DirectJNI._abstractFactories));
        new File(GEN_ROOT_SRC + "/" + "maps").mkdirs();
        FileOutputStream fos = new FileOutputStream(GEN_ROOT_SRC + "/" + "maps/rjbmaps.xml");
        props.storeToXML(fos, null);
        fos.close();

        jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + MAPPING_JAR_NAME, marker);

        if (_webPublishingEnabled)
            genWeb();

        DirectJNI._mappingClassLoader = null;

    } finally {

        System.exit(0);

    }
}

From source file:com.cliqset.magicsig.util.KeyGen.java

public static void main(String[] args) {
    try {//ww w  .j  ava2  s  .  com
        FileOutputStream fos = new FileOutputStream(fileName);
        for (int x = 0; x < numKeys; x++) {
            fos.write((x + " RSA.").getBytes("ASCII"));
            KeyPairGenerator keyPairGenerator = KeyPairGenerator.getInstance("RSA");
            keyPairGenerator.initialize(keySize);
            KeyPair keyPair = keyPairGenerator.genKeyPair();

            KeyFactory keyFactory = KeyFactory.getInstance("RSA");
            RSAPublicKeySpec publicSpec = keyFactory.getKeySpec(keyPair.getPublic(), RSAPublicKeySpec.class);
            RSAPrivateKeySpec privateSpec = keyFactory.getKeySpec(keyPair.getPrivate(),
                    RSAPrivateKeySpec.class);

            fos.write(Base64.encodeBase64URLSafe(getBytes(publicSpec.getModulus())));

            fos.write(".".getBytes("ASCII"));

            fos.write(Base64.encodeBase64URLSafe(getBytes(publicSpec.getPublicExponent())));

            fos.write(".".getBytes("ASCII"));

            fos.write(Base64.encodeBase64URLSafe(getBytes(privateSpec.getPrivateExponent())));

            fos.write("\n".getBytes("ASCII"));

            System.out.println(x);
        }
        fos.close();
    } catch (Exception e) {
        e.printStackTrace();
    }
}

From source file:edu.utsa.sifter.som.MainSOM.java

public static void main(String[] args)
        throws IOException, InterruptedException, CorruptIndexException, NoSuchFieldException {
    final File evPath = new File(args[0]);
    final File idxPath = new File(evPath, "primary-idx");

    final long begin = System.currentTimeMillis();

    // createIndex(path);
    final Path outPath = new Path(new Path(evPath.toString()), "docVectors.seq");
    final Configuration hadoopConf = new Configuration();
    final LocalFileSystem fs = FileSystem.getLocal(hadoopConf);
    final SequenceFile.Writer file = SequenceFile.createWriter(fs, hadoopConf, outPath, LongWritable.class,
            IntArrayWritable.class);

    final DirectoryReader dirReader = DirectoryReader.open(FSDirectory.open(idxPath));

    final SifterConfig conf = new SifterConfig();
    InputStream xmlProps = null;/*from w ww  .j a  v a 2s . com*/
    try {
        xmlProps = new FileInputStream("sifter_props.xml");
    } catch (FileNotFoundException ex) {
        ; // swallow exeption
    }
    conf.loadFromXML(xmlProps); // safe with null

    final MainSOM builder = new MainSOM(dirReader, conf);
    IndexWriter writer = null;
    FileOutputStream somJSFile = null;
    try {
        builder.initTerms();
        builder.writeVectors(file);
        file.close();

        final SequenceFile.Reader seqRdr = new SequenceFile.Reader(fs, outPath, hadoopConf);
        writer = builder.createWriter(new File(evPath, "som-idx"), conf);

        somJSFile = new FileOutputStream(new File(evPath, "som.js"));
        final CharsetEncoder utf8 = Charset.forName("UTF-8").newEncoder();
        utf8.onMalformedInput(CodingErrorAction.IGNORE);
        final Writer somJS = new BufferedWriter(new OutputStreamWriter(somJSFile, utf8));
        builder.makeSOM(conf, seqRdr, writer, somJS);
        writer.forceMerge(1);
    } catch (Exception e) {
        e.printStackTrace(System.err);
    } finally {
        file.close();
        if (writer != null) {
            writer.close();
        }
        if (somJSFile != null) {
            somJSFile.close();
        }
        dirReader.close();

        System.out.println("Number of docs written: " + builder.getNumDocs());
        System.out.println("Number of outlier docs: " + builder.getNumOutliers());
        System.out.println("Total term dimensions: " + builder.getTermsMap().size());
        System.out.println("Max terms per doc: " + builder.getMaxDocTerms());
        System.out.println("Avg terms per doc: " + builder.getAvgDocTerms());
        System.out.println("Duration: " + ((System.currentTimeMillis() - begin) / 1000) + " seconds");

        conf.storeToXML(new FileOutputStream("sifter_props.xml"));
    }
}

From source file:GetMethodExample.java

public static void main(String args[]) {

    HttpClient client = new HttpClient();
    client.getParams().setParameter("http.useragent", "Test Client");
    client.getParams().setParameter("http.connection.timeout", new Integer(5000));

    GetMethod method = new GetMethod();
    FileOutputStream fos = null;

    try {/*w  ww  .j  a  va2 s .  c  o m*/

        method.setURI(new URI("http://www.google.com", true));
        int returnCode = client.executeMethod(method);

        if (returnCode != HttpStatus.SC_OK) {
            System.err.println("Unable to fetch default page, status code: " + returnCode);
        }

        System.err.println(method.getResponseBodyAsString());

        method.setURI(new URI("http://www.google.com/images/logo.gif", true));
        returnCode = client.executeMethod(method);

        if (returnCode != HttpStatus.SC_OK) {
            System.err.println("Unable to fetch image, status code: " + returnCode);
        }

        byte[] imageData = method.getResponseBody();
        fos = new FileOutputStream(new File("google.gif"));
        fos.write(imageData);

        HostConfiguration hostConfig = new HostConfiguration();
        hostConfig.setHost("www.yahoo.com", null, 80, Protocol.getProtocol("http"));

        method.setURI(new URI("/", true));

        client.executeMethod(hostConfig, method);

        System.err.println(method.getResponseBodyAsString());

    } catch (HttpException he) {
        System.err.println(he);
    } catch (IOException ie) {
        System.err.println(ie);
    } finally {
        method.releaseConnection();
        if (fos != null)
            try {
                fos.close();
            } catch (Exception fe) {
            }
    }

}

From source file:MainClass.java

public static void main(String[] args) {
    String[] phrases = { "A", "B 1", "C 1.3" };
    String dirname = "C:/test";
    String filename = "Phrases.txt";
    File dir = new File(dirname);
    File aFile = new File(dir, filename);
    FileOutputStream outputFile = null;
    try {/*  w  ww .  j a  v  a  2s.co  m*/
        outputFile = new FileOutputStream(aFile, true);
    } catch (FileNotFoundException e) {
        e.printStackTrace(System.err);
    }
    FileChannel outChannel = outputFile.getChannel();
    ByteBuffer buf = ByteBuffer.allocate(1024);
    System.out.println(buf.position());
    System.out.println(buf.limit());
    System.out.println(buf.capacity());
    CharBuffer charBuf = buf.asCharBuffer();
    System.out.println(charBuf.position());
    System.out.println(charBuf.limit());
    System.out.println(charBuf.capacity());
    Formatter formatter = new Formatter(charBuf);
    int number = 0;
    for (String phrase : phrases) {
        formatter.format("%n %s", ++number, phrase);
        System.out.println(charBuf.position());
        System.out.println(charBuf.limit());
        System.out.println(charBuf.capacity());
        charBuf.flip();
        System.out.println(charBuf.position());
        System.out.println(charBuf.limit());
        System.out.println(charBuf.length());
        buf.limit(2 * charBuf.length()); // Set byte buffer limit
        System.out.println(buf.position());
        System.out.println(buf.limit());
        System.out.println(buf.remaining());
        try {
            outChannel.write(buf);
            buf.clear();
            charBuf.clear();
        } catch (IOException e) {
            e.printStackTrace(System.err);
        }
    }
    try {
        outputFile.close();
    } catch (IOException e) {
        e.printStackTrace(System.err);
    }
}

From source file:examples.tftp.java

public final static void main(String[] args) {
    boolean receiveFile = true, closed;
    int transferMode = TFTP.BINARY_MODE, argc;
    String arg, hostname, localFilename, remoteFilename;
    TFTPClient tftp;/* ww w.j  a va  2 s.c om*/

    // Parse options
    for (argc = 0; argc < args.length; argc++) {
        arg = args[argc];
        if (arg.startsWith("-")) {
            if (arg.equals("-r"))
                receiveFile = true;
            else if (arg.equals("-s"))
                receiveFile = false;
            else if (arg.equals("-a"))
                transferMode = TFTP.ASCII_MODE;
            else if (arg.equals("-b"))
                transferMode = TFTP.BINARY_MODE;
            else {
                System.err.println("Error: unrecognized option.");
                System.err.print(USAGE);
                System.exit(1);
            }
        } else
            break;
    }

    // Make sure there are enough arguments
    if (args.length - argc != 3) {
        System.err.println("Error: invalid number of arguments.");
        System.err.print(USAGE);
        System.exit(1);
    }

    // Get host and file arguments
    hostname = args[argc];
    localFilename = args[argc + 1];
    remoteFilename = args[argc + 2];

    // Create our TFTP instance to handle the file transfer.
    tftp = new TFTPClient();

    // We want to timeout if a response takes longer than 60 seconds
    tftp.setDefaultTimeout(60000);

    // Open local socket
    try {
        tftp.open();
    } catch (SocketException e) {
        System.err.println("Error: could not open local UDP socket.");
        System.err.println(e.getMessage());
        System.exit(1);
    }

    // We haven't closed the local file yet.
    closed = false;

    // If we're receiving a file, receive, otherwise send.
    if (receiveFile) {
        FileOutputStream output = null;
        File file;

        file = new File(localFilename);

        // If file exists, don't overwrite it.
        if (file.exists()) {
            System.err.println("Error: " + localFilename + " already exists.");
            System.exit(1);
        }

        // Try to open local file for writing
        try {
            output = new FileOutputStream(file);
        } catch (IOException e) {
            tftp.close();
            System.err.println("Error: could not open local file for writing.");
            System.err.println(e.getMessage());
            System.exit(1);
        }

        // Try to receive remote file via TFTP
        try {
            tftp.receiveFile(remoteFilename, transferMode, output, hostname);
        } catch (UnknownHostException e) {
            System.err.println("Error: could not resolve hostname.");
            System.err.println(e.getMessage());
            System.exit(1);
        } catch (IOException e) {
            System.err.println("Error: I/O exception occurred while receiving file.");
            System.err.println(e.getMessage());
            System.exit(1);
        } finally {
            // Close local socket and output file
            tftp.close();
            try {
                output.close();
                closed = true;
            } catch (IOException e) {
                closed = false;
                System.err.println("Error: error closing file.");
                System.err.println(e.getMessage());
            }
        }

        if (!closed)
            System.exit(1);

    } else {
        // We're sending a file
        FileInputStream input = null;

        // Try to open local file for reading
        try {
            input = new FileInputStream(localFilename);
        } catch (IOException e) {
            tftp.close();
            System.err.println("Error: could not open local file for reading.");
            System.err.println(e.getMessage());
            System.exit(1);
        }

        // Try to send local file via TFTP
        try {
            tftp.sendFile(remoteFilename, transferMode, input, hostname);
        } catch (UnknownHostException e) {
            System.err.println("Error: could not resolve hostname.");
            System.err.println(e.getMessage());
            System.exit(1);
        } catch (IOException e) {
            System.err.println("Error: I/O exception occurred while sending file.");
            System.err.println(e.getMessage());
            System.exit(1);
        } finally {
            // Close local socket and input file
            tftp.close();
            try {
                input.close();
                closed = true;
            } catch (IOException e) {
                closed = false;
                System.err.println("Error: error closing file.");
                System.err.println(e.getMessage());
            }
        }

        if (!closed)
            System.exit(1);

    }

}

From source file:examples.tftp.java

public final static void main(String[] args) {
    boolean receiveFile = true, closed;
    int transferMode = TFTP.BINARY_MODE, argc;
    String arg, hostname, localFilename, remoteFilename;
    TFTPClient tftp;//from  w ww.j a va  2 s .c  o  m

    // Parse options
    for (argc = 0; argc < args.length; argc++) {
        arg = args[argc];
        if (arg.startsWith("-")) {
            if (arg.equals("-r"))
                receiveFile = true;
            else if (arg.equals("-s"))
                receiveFile = false;
            else if (arg.equals("-a"))
                transferMode = TFTP.ASCII_MODE;
            else if (arg.equals("-b"))
                transferMode = TFTP.BINARY_MODE;
            else {
                System.err.println("Error: unrecognized option.");
                System.err.print(USAGE);
                System.exit(1);
            }
        } else
            break;
    }

    // Make sure there are enough arguments
    if (args.length - argc != 3) {
        System.err.println("Error: invalid number of arguments.");
        System.err.print(USAGE);
        System.exit(1);
    }

    // Get host and file arguments
    hostname = args[argc];
    localFilename = args[argc + 1];
    remoteFilename = args[argc + 2];

    // Create our TFTP instance to handle the file transfer.
    tftp = new TFTPClient();

    // We want to timeout if a response takes longer than 60 seconds
    tftp.setDefaultTimeout(60000);

    // Open local socket
    try {
        tftp.open();
    } catch (SocketException e) {
        System.err.println("Error: could not open local UDP socket.");
        System.err.println(e.getMessage());
        System.exit(1);
    }

    // We haven't closed the local file yet.
    closed = false;

    // If we're receiving a file, receive, otherwise send.
    if (receiveFile) {
        FileOutputStream output = null;
        File file;

        file = new File(localFilename);

        // If file exists, don't overwrite it.
        if (file.exists()) {
            System.err.println("Error: " + localFilename + " already exists.");
            System.exit(1);
        }

        // Try to open local file for writing
        try {
            output = new FileOutputStream(file);
        } catch (IOException e) {
            tftp.close();
            System.err.println("Error: could not open local file for writing.");
            System.err.println(e.getMessage());
            System.exit(1);
        }

        // Try to receive remote file via TFTP
        try {
            tftp.receiveFile(remoteFilename, transferMode, output, hostname);
        } catch (UnknownHostException e) {
            System.err.println("Error: could not resolve hostname.");
            System.err.println(e.getMessage());
            System.exit(1);
        } catch (IOException e) {
            System.err.println("Error: I/O exception occurred while receiving file.");
            System.err.println(e.getMessage());
            System.exit(1);
        } finally {
            // Close local socket and output file
            tftp.close();
            try {
                output.close();
                closed = true;
            } catch (IOException e) {
                closed = false;
                System.err.println("Error: error closing file.");
                System.err.println(e.getMessage());
            }
        }

        if (!closed)
            System.exit(1);

    } else {
        // We're sending a file
        FileInputStream input = null;

        // Try to open local file for reading
        try {
            input = new FileInputStream(localFilename);
        } catch (IOException e) {
            tftp.close();
            System.err.println("Error: could not open local file for reading.");
            System.err.println(e.getMessage());
            System.exit(1);
        }

        // Try to send local file via TFTP
        try {
            tftp.sendFile(remoteFilename, transferMode, input, hostname);
        } catch (UnknownHostException e) {
            System.err.println("Error: could not resolve hostname.");
            System.err.println(e.getMessage());
            System.exit(1);
        } catch (IOException e) {
            System.err.println("Error: I/O exception occurred while sending file.");
            System.err.println(e.getMessage());
            System.exit(1);
        } finally {
            // Close local socket and input file
            tftp.close();
            try {
                input.close();
                closed = true;
            } catch (IOException e) {
                closed = false;
                System.err.println("Error: error closing file.");
                System.err.println(e.getMessage());
            }
        }

        if (!closed)
            System.exit(1);

    }

}