Example usage for java.io PrintStream print

List of usage examples for java.io PrintStream print

  1. HOME
  2. Java
  3. java
  4. java.io.*
  5. PrintStream
  6. print

Introduction

In this page you can find the example usage for java.io PrintStream print.

Prototype

public void print(Object obj)

Source Link

Document

Prints an object.

Usage

From source file:com.taobao.android.builder.tools.sign.LocalSignedJarBuilder.java

/**
 * Writes a .SF file with a digest to the manifest.
 *//*from  w ww  . j  av a  2s.  c o m*/
private void writeSignatureFile(OutputStream out) throws IOException, GeneralSecurityException {
    Manifest sf = new Manifest();
    Attributes main = sf.getMainAttributes();
    main.putValue("Signature-Version", "1.0");
    main.putValue("Created-By", "1.0 (Android)");

    MessageDigest md = MessageDigest.getInstance(DIGEST_ALGORITHM);
    PrintStream print = new PrintStream(new DigestOutputStream(new ByteArrayOutputStream(), md), true,
            SdkConstants.UTF_8);

    // Digest of the entire manifest
    mManifest.write(print);
    print.flush();
    main.putValue(DIGEST_MANIFEST_ATTR, new String(Base64.encode(md.digest()), "ASCII"));

    Map<String, Attributes> entries = mManifest.getEntries();
    for (Map.Entry<String, Attributes> entry : entries.entrySet()) {
        // Digest of the manifest stanza for this entry.
        print.print("Name: " + entry.getKey() + "\r\n");
        for (Map.Entry<Object, Object> att : entry.getValue().entrySet()) {
            print.print(att.getKey() + ": " + att.getValue() + "\r\n");
        }
        print.print("\r\n");
        print.flush();

        Attributes sfAttr = new Attributes();
        sfAttr.putValue(DIGEST_ATTR, new String(Base64.encode(md.digest()), "ASCII"));
        sf.getEntries().put(entry.getKey(), sfAttr);
    }
    CountOutputStream cout = new CountOutputStream(out);
    sf.write(cout);

    // A bug in the java.util.jar implementation of Android platforms
    // up to version 1.6 will cause a spurious IOException to be thrown
    // if the length of the signature file is a multiple of 1024 bytes.
    // As a workaround, add an extra CRLF in this case.
    if ((cout.size() % 1024) == 0) {
        cout.write('\r');
        cout.write('\n');
    }
}

From source file:eu.europa.ec.fisheries.uvms.plugins.inmarsat.twostage.Connect.java

private String issueCommand(PollType poll, PrintStream out, InputStream in, String dnid, String path,
        String url, String port) throws TelnetException, IOException {
    String filename = getFileName(path);
    FileOutputStream stream = null;
    try {/*  www . j av  a2 s. com*/
        stream = new FileOutputStream(filename);
    } catch (FileNotFoundException e) {
        LOG.warn("Could not read/create file for TwoStage Command: {}", filename);
    }
    String result;
    if (poll != null) {
        result = sendPollCommand(poll, out, in, stream, url, port);
    } else {
        result = sendDownloadCommand(out, in, stream, dnid, url, port);
    }
    if (stream != null) {
        stream.flush();
        stream.close();

        //Delete file for polls, these are persisted elsewhere
        if (poll != null) {
            File f = new File(filename);
            if (f.exists() && f.isFile()) {
                f.delete();
            }
        }
    }
    out.print("QUIT \r\n");
    out.flush();
    return result;
}

From source file:org.dspace.identifier.doi.DOIOrganiser.java

public void list(String processName, PrintStream out, PrintStream err, Integer... status) {
    String indent = "    ";
    if (null == out) {
        out = System.out;//from w w w . j  a v a2 s . c o m
    }
    if (null == err) {
        err = System.err;
    }

    try {
        List<DOI> doiList = doiService.getDOIsByStatus(context, Arrays.asList(status));
        if (0 < doiList.size()) {
            out.println("DOIs queued for " + processName + ": ");
        } else {
            out.println("There are no DOIs queued for " + processName + ".");
        }
        for (DOI doiRow : doiList) {
            out.print(indent + DOI.SCHEME + doiRow.getDoi());
            DSpaceObject dso = doiRow.getDSpaceObject();
            if (null != dso) {
                out.println(" (belongs to item with handle " + dso.getHandle() + ")");
            } else {
                out.println(" (cannot determine handle of assigned object)");
            }
        }
        out.println("");
    } catch (SQLException ex) {
        err.println("Error in database Connection: " + ex.getMessage());
        ex.printStackTrace(err);
    }
}

From source file:ca.nines.ise.cmd.Annotations.java

/**
 * {@inheritDoc}//from  w ww .  java 2 s .c  o m
 */
@ErrorCode(code = { "dom.errors" })
@Override
public void execute(CommandLine cmd) throws Exception {
    Log log = Log.getInstance();
    Locale.setDefault(Locale.ENGLISH);
    PrintStream logOut = new PrintStream(System.out, true, "UTF-8");

    if (cmd.hasOption("l")) {
        logOut = new PrintStream(new FileOutputStream(cmd.getOptionValue("l")), true, "UTF-8");
    }

    String args[] = getArgList(cmd);

    File docFile = new File(args[0]);
    if (!docFile.exists()) {
        System.err.println("Cannot read document " + docFile.getCanonicalPath());
        System.exit(1);
    }

    File annFile = new File(args[1]);
    if (!annFile.exists()) {
        System.err.println("Cannot read annotations " + annFile.getCanonicalPath());
        System.exit(1);
    }

    DOM dom = new DOMBuilder(docFile).build();
    if (dom.getStatus() != DOM.DOMStatus.ERROR) {
        Annotation annotation = Annotation.builder().from(annFile).build();
        AnnotationValidator av = new AnnotationValidator();
        av.validate(dom, annotation);
    } else {
        Message m = Message.builder("dom.errors").setSource(dom.getSource()).build();
        log.add(m);
    }
    if (log.count() > 0) {
        logOut.print(log);
    }
}

From source file:com.netscape.cms.publish.publishers.FileBasedPublisher.java

/**
 * Publishes a object to the ldap directory.
 *
 * @param conn a Ldap connection//from   w w w . ja v a  2  s .  co m
 *            (null if LDAP publishing is not enabled)
 * @param dn dn of the ldap entry to publish cert
 *            (null if LDAP publishing is not enabled)
 * @param object object to publish
 *            (java.security.cert.X509Certificate or,
 *            java.security.cert.X509CRL)
 */
public void publish(LDAPConnection conn, String dn, Object object) throws ELdapException {
    CMS.debug("FileBasedPublisher: publish");

    try {
        if (object instanceof X509Certificate) {
            X509Certificate cert = (X509Certificate) object;
            BigInteger sno = cert.getSerialNumber();
            String name = mDir + File.separator + "cert-" + sno.toString();
            if (mDerAttr) {
                FileOutputStream fos = null;
                try {
                    String fileName = name + ".der";
                    fos = new FileOutputStream(fileName);
                    fos.write(cert.getEncoded());
                } finally {
                    if (fos != null)
                        fos.close();
                }
            }
            if (mB64Attr) {
                String fileName = name + ".b64";
                PrintStream ps = null;
                Base64OutputStream b64 = null;
                FileOutputStream fos = null;
                try {
                    fos = new FileOutputStream(fileName);
                    ByteArrayOutputStream output = new ByteArrayOutputStream();
                    b64 = new Base64OutputStream(new PrintStream(new FilterOutputStream(output)));
                    b64.write(cert.getEncoded());
                    b64.flush();
                    ps = new PrintStream(fos);
                    ps.print(output.toString("8859_1"));
                } finally {
                    if (ps != null) {
                        ps.close();
                    }
                    if (b64 != null) {
                        b64.close();
                    }
                    if (fos != null)
                        fos.close();
                }
            }
        } else if (object instanceof X509CRL) {
            X509CRL crl = (X509CRL) object;
            String[] namePrefix = getCrlNamePrefix(crl, mTimeStamp.equals("GMT"));
            String baseName = mDir + File.separator + namePrefix[0];
            String tempFile = baseName + ".temp";
            ZipOutputStream zos = null;
            byte[] encodedArray = null;
            File destFile = null;
            String destName = null;
            File renameFile = null;

            if (mDerAttr) {
                FileOutputStream fos = null;
                try {
                    fos = new FileOutputStream(tempFile);
                    encodedArray = crl.getEncoded();
                    fos.write(encodedArray);
                } finally {
                    if (fos != null)
                        fos.close();
                }
                if (mZipCRL) {
                    try {
                        zos = new ZipOutputStream(new FileOutputStream(baseName + ".zip"));
                        zos.setLevel(mZipLevel);
                        zos.putNextEntry(new ZipEntry(baseName + ".der"));
                        zos.write(encodedArray, 0, encodedArray.length);
                        zos.closeEntry();
                    } finally {
                        if (zos != null)
                            zos.close();
                    }
                }
                destName = baseName + ".der";
                destFile = new File(destName);

                if (destFile.exists()) {
                    destFile.delete();
                }
                renameFile = new File(tempFile);
                renameFile.renameTo(destFile);

                if (mLatestCRL) {
                    String linkExt = ".";
                    if (mLinkExt != null && mLinkExt.length() > 0) {
                        linkExt += mLinkExt;
                    } else {
                        linkExt += "der";
                    }
                    String linkName = mDir + File.separator + namePrefix[1] + linkExt;
                    createLink(linkName, destName);
                    if (mZipCRL) {
                        linkName = mDir + File.separator + namePrefix[1] + ".zip";
                        createLink(linkName, baseName + ".zip");
                    }
                }
            }

            // output base64 file
            if (mB64Attr == true) {
                if (encodedArray == null)
                    encodedArray = crl.getEncoded();
                FileOutputStream fos = null;
                try {
                    fos = new FileOutputStream(tempFile);
                    fos.write(Utils.base64encode(encodedArray, true).getBytes());
                } finally {
                    if (fos != null)
                        fos.close();
                }
                destName = baseName + ".b64";
                destFile = new File(destName);

                if (destFile.exists()) {
                    destFile.delete();
                }
                renameFile = new File(tempFile);
                renameFile.renameTo(destFile);
            }
            purgeExpiredFiles();
            purgeExcessFiles();
        }
    } catch (IOException e) {
        mLogger.log(ILogger.EV_SYSTEM, ILogger.S_OTHER, ILogger.LL_FAILURE,
                CMS.getLogMessage("PUBLISH_FILE_PUBLISHER_ERROR", e.toString()));
    } catch (CertificateEncodingException e) {
        mLogger.log(ILogger.EV_SYSTEM, ILogger.S_OTHER, ILogger.LL_FAILURE,
                CMS.getLogMessage("PUBLISH_FILE_PUBLISHER_ERROR", e.toString()));
    } catch (CRLException e) {
        mLogger.log(ILogger.EV_SYSTEM, ILogger.S_OTHER, ILogger.LL_FAILURE,
                CMS.getLogMessage("PUBLISH_FILE_PUBLISHER_ERROR", e.toString()));
    }
}

From source file:es.cnio.bioinfo.bicycle.gatk.MethylationFilePair.java

private void flushCrick() {
    PrintStream stream;
    try {/*from w  w  w .  ja va2 s  .co  m*/
        stream = new PrintStream(new BufferedOutputStream(new FileOutputStream(crickFile, true)));
        stream.print(crickBuffer.toString());
        crickBuffer.setLength(0);
        stream.flush();
        stream.close();
        printCrickCount = 0;
    } catch (FileNotFoundException e) {
        throw new RuntimeException(e);
    }
}

From source file:com.bigdata.dastor.tools.DastorAdminCli.java

/**
 * Write a textual representation of the Dastor ring.
 * /*from w w w.jav a  2  s.c om*/
 * @param outs the stream to write to
 */
public void printRing(PrintStream outs) {
    Map<Range, List<String>> rangeMap = probe.getRangeToEndPointMap(null);
    List<Range> ranges = new ArrayList<Range>(rangeMap.keySet());
    Collections.sort(ranges);
    Set<String> liveNodes = probe.getLiveNodes();
    Set<String> deadNodes = probe.getUnreachableNodes();
    Map<String, String> loadMap = probe.getLoadMap();

    // Print range-to-endpoint mapping
    int counter = 0;
    outs.print(String.format("%-14s", "PrimaryNode"));
    outs.print(String.format("%-11s", "Status"));
    outs.print(String.format("%-14s", "Load"));
    outs.print(String.format("%-43s", "PositionCode"));
    outs.println(" Replicas");
    // emphasize that we're showing the right part of each range
    if (ranges.size() > 1) {
        outs.println(String.format("%-14s%-11s%-14s%-43s", "", "", "", ranges.get(0).left));
    }
    // normal range & node info
    for (Range range : ranges) {
        List<String> endpoints = rangeMap.get(range);
        String primaryEndpoint = endpoints.get(0);

        outs.print(String.format("%-14s", primaryEndpoint));

        String status = liveNodes.contains(primaryEndpoint) ? "Up"
                : deadNodes.contains(primaryEndpoint) ? "Down" : "?";
        outs.print(String.format("%-11s", status));

        String load = loadMap.containsKey(primaryEndpoint) ? loadMap.get(primaryEndpoint) : "?";
        outs.print(String.format("%-14s", load));

        outs.print(String.format("%-43s", range.right));

        for (int i = 1; i < endpoints.size(); i++) {
            String ep = endpoints.get(i);
            String epsta = liveNodes.contains(ep) ? "u" : deadNodes.contains(primaryEndpoint) ? "d" : "?";
            outs.print(" " + ep + "[" + epsta + "]");
        }
        outs.println("");

        /*
        String asciiRingArt;
        if (counter == 0)
        {
        asciiRingArt = "|<--|";
        }
        else if (counter == (rangeMap.size() - 1))
        {
        asciiRingArt = "|-->|";
        }
        else
        {
        if ((rangeMap.size() > 4) && ((counter % 2) == 0))
            asciiRingArt = "v   |";
        else if ((rangeMap.size() > 4) && ((counter % 2) != 0))
            asciiRingArt = "|   ^";
        else
            asciiRingArt = "|   |";
        }
        outs.println(asciiRingArt);
                
        counter++;
        */
    }
}

From source file:es.cnio.bioinfo.bicycle.gatk.MethylationFilePair.java

private void flushWatson() {
    PrintStream stream;
    try {/*ww  w . j  a  va 2  s .  com*/
        stream = new PrintStream(new BufferedOutputStream(new FileOutputStream(watsonFile, true)));
        stream.print(watsonBuffer.toString());
        watsonBuffer.setLength(0);
        stream.flush();
        stream.close();
        printWatsonCount = 0;
    } catch (FileNotFoundException e) {
        throw new RuntimeException(e);
    }
}

From source file:org.eclipse.orion.server.git.jobs.CloneJob.java

private IStatus doClone() {
    try {// w ww .  ja  va  2 s .  c  o m
        File cloneFolder = new File(clone.getContentLocation().getPath());
        if (!cloneFolder.exists()) {
            cloneFolder.mkdir();
        }
        CloneCommand cc = Git.cloneRepository();
        cc.setBare(false);
        cc.setCredentialsProvider(credentials);
        cc.setDirectory(cloneFolder);
        cc.setRemote(Constants.DEFAULT_REMOTE_NAME);
        cc.setURI(clone.getUrl());
        Git git = cc.call();

        // Configure the clone, see Bug 337820
        GitCloneHandlerV1.doConfigureClone(git, user, gitUserName, gitUserMail);
        git.getRepository().close();

        if (initProject) {
            File projectJsonFile = new File(cloneFolder.getPath() + File.separator + "project.json");
            if (!projectJsonFile.exists()) {
                PrintStream out = null;
                try {
                    out = new PrintStream(new FileOutputStream(projectJsonFile));
                    JSONObject projectjson = new JSONObject();

                    String gitPath = clone.getUrl();
                    if (gitPath.indexOf("://") > 0) {
                        gitPath = gitPath.substring(gitPath.indexOf("://") + 3);
                    }
                    String[] segments = gitPath.split("/");
                    String serverName = segments[0];
                    if (serverName.indexOf("@") > 0) {
                        serverName = serverName.substring(serverName.indexOf("@") + 1);
                    }
                    String repoName = segments[segments.length - 1];
                    if (repoName.indexOf(".git") > 0) {
                        repoName = repoName.substring(0, repoName.lastIndexOf(".git"));
                    }
                    projectjson.put("Name", repoName + " at " + serverName);
                    out.print(projectjson.toString());
                } finally {
                    if (out != null)
                        out.close();
                }
            }
        }

    } catch (IOException e) {
        return new Status(IStatus.ERROR, GitActivator.PI_GIT, "Error cloning git repository", e);
    } catch (CoreException e) {
        return e.getStatus();
    } catch (GitAPIException e) {
        return getGitAPIExceptionStatus(e, "Error cloning git repository");
    } catch (JGitInternalException e) {
        return getJGitInternalExceptionStatus(e, "Error cloning git repository");
    } catch (Exception e) {
        return new Status(IStatus.ERROR, GitActivator.PI_GIT, "Error cloning git repository", e);
    }
    JSONObject jsonData = new JSONObject();
    try {
        jsonData.put(ProtocolConstants.KEY_LOCATION, URI.create(this.cloneLocation));
    } catch (JSONException e) {
        // Should not happen
    }

    return new ServerStatus(Status.OK_STATUS, HttpServletResponse.SC_OK, jsonData);
}

From source file:es.cnio.bioinfo.bicycle.gatk.MethylationFilePair.java

private void writeVCFRecord(PrintStream out, MethylationCall call) {
    double cutOff = this.cutOffs.get(call.getStrand()).get(call.getContext());

    out.print(call.getContig() + "\t");
    out.print(call.getPosition() + "\t");
    out.print(call.getContext() + "\t");
    out.print("C\t");
    if (call.getPval() < cutOff) {
        out.print("C\t");
    } else {/*www.j av a  2s.  com*/
        out.print(".\t");
    }
    out.print(".\t.\t");

    //info
    out.print("NS=1;");
    out.print("DP=" + call.getDepth() + ";");
    out.print("CTDP=" + call.getCTdepth() + ";");
    out.print("CD=" + call.getCytosines() + ";");

    //modified (osvaldo, 3jan2016)
    //out.print("PER="+new DecimalFormat("###.##").format(100*(double)call.getCytosines()/(double)call.getDepth())
    // +";");
    out.print("BS=" + new DecimalFormat("#.#######").format(call.getBetaScore()) + ";");

    out.print("PU=" + call.getPileup() + ";");
    if (call.isCorrectedFromNonCG()) {
        out.print("CO;");
    }
    if (call.isAddedByCorrection()) {
        out.print("AC;");
    }

    out.print("STR=" + (call.getStrand() == Strand.WATSON ? "+" : "-") + ";");

    for (int i = 0; i < this.beds.size(); i++) {
        out.print(this.beds.get(i).getName() + "=" + call.getAnnotations().get(i) + ";");
    }
    out.println();
}