Example usage for java.lang Process getErrorStream

List of usage examples for java.lang Process getErrorStream

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Introduction

In this page you can find the example usage for java.lang Process getErrorStream.

Prototype

public abstract InputStream getErrorStream();

Source Link

Document

Returns the input stream connected to the error output of the process.

Usage

From source file:com.github.lindenb.mscheduler.MScheduler.java

private int build(final String argv[]) {
    Transaction txn = null;/*from w w  w. j  av  a2s.com*/
    BufferedReader in = null;
    String makeExecutable = "make";
    try {
        this.options
                .addOption(Option.builder(OPTION_MAKE_EXECUTABLE).hasArg(true).longOpt(OPTION_MAKE_EXECUTABLE)
                        .argName("MAKE").desc("make executable. Default: " + makeExecutable).build());

        this.options.addOption(Option.builder(OPTION_MAKEFILEIN).hasArg(true).longOpt("makefile").argName("DIR")
                .desc("debug Makefile").build());

        final CommandLineParser parser = new DefaultParser();
        this.cmdLine = parser.parse(this.options, argv);
        final List<String> args = this.cmdLine.getArgList();

        if (cmdLine.hasOption(OPTION_MAKE_EXECUTABLE)) {
            makeExecutable = cmdLine.getOptionValue(OPTION_MAKE_EXECUTABLE);
        }

        if (cmdLine.hasOption(OPTION_HELP)) {
            return printHelp("build");
        }

        if (parseWorkingDirectory() != 0)
            return -1;

        if (!cmdLine.hasOption(OPTION_MAKEFILEIN)) {
            LOG.error("option -" + OPTION_MAKEFILEIN + " undefined");
            return -1;
        }
        final File makefileIn = new File(cmdLine.getOptionValue(OPTION_MAKEFILEIN));
        if (!makefileIn.exists()) {
            System.err.println("Option -" + OPTION_MAKEFILEIN + " file doesn't exists: " + makefileIn);
            return -1;
        }

        if (!makefileIn.isFile()) {
            System.err.println("Option -" + OPTION_MAKEFILEIN + " this is not a file : " + makefileIn);
            return -1;
        }
        if (!makefileIn.isAbsolute() || makefileIn.getParentFile() == null) {
            System.err.println("Option -" + OPTION_MAKEFILEIN + " path is not absolute : " + makefileIn);
            return -1;
        }

        if (openEnvironement(txn, true, false) != 0) {
            return -1;
        }

        final List<String> cmdargs = new ArrayList<>();
        cmdargs.add(makeExecutable);
        cmdargs.add("-ndr");
        cmdargs.add("-C");
        cmdargs.add(makefileIn.getParentFile().getPath());
        cmdargs.add("-f");
        cmdargs.add(makefileIn.getName());
        for (final String arg : args)
            cmdargs.add(arg);

        LOG.info("invoking make :" + String.join(" ", cmdargs));
        final ProcessBuilder procbuilder = new ProcessBuilder(cmdargs);
        procbuilder.directory(makefileIn.getParentFile());

        final Process proc = procbuilder.start();
        final StreamBoozer sb = new StreamBoozer(proc.getErrorStream(), System.err, "[make]");
        sb.start();

        LOG.info("Reading graph");
        in = new BufferedReader(new InputStreamReader(proc.getInputStream()));
        final Graph graph = Graph.parse(in);
        IoUtils.close(in);
        in = null;
        final Task.Binding taskBinding = new Task.Binding();
        int nTargets = 0;
        LOG.info("inserting targets");
        final DatabaseEntry key = new DatabaseEntry();
        final DatabaseEntry data = new DatabaseEntry();
        for (final Target t : graph.getTargets()) {
            if (nTargets++ % 100 == 0)
                LOG.info("inserting " + t.getName() + " " + nTargets);
            final Task task = new Task(t);

            //skip those targets, eg. "Makefile"
            if (task.shellScriptLines.isEmpty() && task.getPrerequisites().isEmpty()) {
                task.targetStatus = TaskStatus.COMPLETED;
            }

            StringBinding.stringToEntry(t.getName(), key);
            taskBinding.objectToEntry(task, data);
            if (this.targetsDatabase.put(txn, key, data) != OperationStatus.SUCCESS) {
                LOG.error("Cannot insert " + task);
                return -1;
            }
        }

        LOG.info("inserting metadata");
        StringBinding.stringToEntry(BASEDIRKEY, key);
        StringBinding.stringToEntry(makefileIn.getParentFile().getPath(), data);
        if (this.metaDatabase.put(txn, key, data) != OperationStatus.SUCCESS) {
            LOG.error("Cannot insert " + BASEDIRKEY);
            return -1;
        }

        return 0;
    } catch (Exception err) {
        LOG.error("Boum", err);
        return -1;
    } finally {
        close();
    }
}

From source file:com.ikanow.infinit.e.processing.custom.launcher.CustomHadoopTaskLauncher.java

public String runHadoopJob_commandLine(CustomMapReduceJobPojo job, String jar) {
    String jobid = null;/* w w  w  . j  a v a 2 s.  com*/
    try {
        job.tempConfigXMLLocation = createConfigXML_commandLine(job.jobtitle, job.inputCollection,
                job._id.toString(), job.tempConfigXMLLocation, job.mapper, job.reducer, job.combiner,
                InfiniteHadoopUtils.getQueryOrProcessing(job.query, InfiniteHadoopUtils.QuerySpec.QUERY),
                job.communityIds, job.isCustomTable, job.getOutputDatabase(), job.outputKey, job.outputValue,
                job.outputCollectionTemp, job.arguments, job.incrementalMode, job.submitterID, job.selfMerge,
                job.outputCollection, job.appendResults);
        Runtime rt = Runtime.getRuntime();
        String[] commands = new String[] { "hadoop", "--config", props_custom.getHadoopConfigPath() + "/hadoop",
                "jar", jar, "-conf", job.tempConfigXMLLocation };
        String command = "";
        for (String s : commands)
            command += s + " ";
        Process pr = rt.exec(command);

        //Once we start running the command attach to stderr to
        //receive the output to parse out the jobid
        InputStream in = pr.getErrorStream();
        InputStreamReader is = new InputStreamReader(in);
        BufferedReader br = new BufferedReader(is);
        StringBuilder output = new StringBuilder();
        String line = null;

        long startTime = new Date().getTime();
        boolean bGotJobId = false;
        //while we haven't found the id, there are still lines to read, and it hasn't been more than 60 seconds
        while (!bGotJobId && (line = br.readLine()) != null
                && (new Date().getTime() - startTime) < InfiniteHadoopUtils.SECONDS_60) {
            output.append(line);
            int getJobIdIndex = -1;
            String searchstring = "INFO mapred.JobClient: Running job: ";
            if ((getJobIdIndex = line.indexOf(searchstring)) >= 0) {
                // Get JobId and trim() it (obviously trivial)
                jobid = line.substring(getJobIdIndex + searchstring.length()).trim();
                bGotJobId = true;
            }
        }

        //60 seconds passed and we never found the id
        if (!bGotJobId) {
            _logger.info("job_start_timeout_error_title=" + job.jobtitle + " job_start_timeout_error_id="
                    + job._id.toString() + " job_start_timeout_error_message=" + output.toString());
            //if we never found the id mark it as errored out
            return "Error:\n" + output.toString();
        }
    } catch (Exception ex) {
        //had an error running command
        //probably log error to the job so we stop trying to run it
        _logger.info("job_start_timeout_error_title=" + job.jobtitle + " job_start_timeout_error_id="
                + job._id.toString() + " job_start_timeout_error_message="
                + InfiniteHadoopUtils.createExceptionMessage(ex));
        jobid = "Error:\n" + ex.getMessage(); // (means this gets displayed)         
    }
    return jobid;
}

From source file:canreg.client.analysis.Tools.java

public static LinkedList<String> callR(String rScript, String rpath, String reportFileName)
        throws TableErrorException {
    LinkedList<String> filesCreated = new LinkedList<String>();
    Runtime rt = Runtime.getRuntime();
    ArrayList<String> commandList = new ArrayList<String>();
    commandList.add(rpath);/*from ww w . j a v  a2  s.  c  o  m*/
    commandList.add("CMD");
    commandList.add("BATCH");
    commandList.add("--vanilla");
    commandList.add("--slave");
    commandList.add(rScript);
    commandList.add(reportFileName);

    //String command = canreg.common.Tools.encapsulateIfNeeded(rpath)
    //        + " CMD BATCH --vanilla --slave "
    //        + canreg.common.Tools.encapsulateIfNeeded(rScript) + " "
    //        + canreg.common.Tools.encapsulateIfNeeded(reportFileName);
    System.out.println(commandList);
    Process pr = null;
    try {
        pr = rt.exec(commandList.toArray(new String[] {}));
        // collect the output from the R program in a stream
        // BufferedInputStream is = new BufferedInputStream(pr.getInputStream());
        pr.waitFor();
        BufferedInputStream is = new BufferedInputStream(new FileInputStream(reportFileName));
        // convert the output to a string
        String theString = convertStreamToString(is);
        Logger.getLogger(RTableBuilderGrouped.class.getName()).log(Level.INFO, "Messages from R: \n{0}",
                theString);
        // System.out.println(theString);
        // and add all to the list of files to return
        for (String fileName : theString.split("\n")) {
            if (fileName.startsWith("-outFile:")) {
                fileName = fileName.replaceFirst("-outFile:", "");
                if (new File(fileName).exists()) {
                    filesCreated.add(fileName);
                }
            }
        }
    } catch (InterruptedException ex) {
        Logger.getLogger(RTableBuilder.class.getName()).log(Level.SEVERE, null, ex);
    } catch (java.util.NoSuchElementException ex) {
        Logger.getLogger(RTableBuilder.class.getName()).log(Level.SEVERE, null, ex);
        if (pr != null) {
            BufferedInputStream errorStream = new BufferedInputStream(pr.getErrorStream());
            String errorMessage = convertStreamToString(errorStream);
            System.out.println(errorMessage);
            throw new TableErrorException("R says:\n \"" + errorMessage + "\"");
        }
    } catch (IOException ex) {
        Logger.getLogger(Tools.class.getName()).log(Level.SEVERE, null, ex);
    } finally {
        if (pr != null) {
            System.out.println(pr.exitValue());
        }
    }
    return filesCreated;
}

From source file:es.ehu.si.ixa.qwn.ppv.CLI.java

private void ukb_compile(String execpath, String kbfile) {
    String graph = FilenameUtils.removeExtension(kbfile);
    graph = graph + ".bin";

    try {// w ww .ja  v a 2s .  co  m
        String[] command = { execpath + File.separator + "compile_kb", "-o", graph, kbfile };
        //System.err.println("UKB komandoa: "+Arrays.toString(command));

        ProcessBuilder ukbBuilder = new ProcessBuilder().command(command);
        //.redirectErrorStream(true);
        Process compile_kb = ukbBuilder.start();
        int success = compile_kb.waitFor();
        //System.err.println("compile_kb succesful? "+success);
        if (success != 0) {
            BufferedReader bufferedReader = new BufferedReader(
                    new InputStreamReader(compile_kb.getErrorStream()), 1);
            String line;
            while ((line = bufferedReader.readLine()) != null) {
                System.err.println(line);
            }
        }
    } catch (Exception e) {
        System.err.println("Graph compilation: error when calling compile_kb.\n");
        e.printStackTrace();
        System.exit(1);
    }
}

From source file:com.turn.ttorrent.client.Client.java

private void mergeFiles() {
    for (Torrent.TorrentFile file : this.torrent.files) {
        String filesPath = "";
        for (int i = 0; i < (file.size / this.torrent.pieceLength); i++) {
            filesPath += new File(this.torrent.parentPath, file.getPath() + "." + i).getAbsolutePath() + " ";
            //FilenameUtils.concat(this.torrent.parentPath, file.getPath()+"."+i+" ");
            System.out.println(filesPath);
        }//w  w  w.  jav a2s .  c  o m
        try {
            System.out.println("Complete command " + this.torrent.getCompleteCommand());
            ProcessBuilder pb = new ProcessBuilder("/bin/bash", "-c",
                    this.torrent.getCompleteCommand()/*"cat $PART_LIST > $FILE"*/);
            Map<String, String> env = pb.environment();
            env.put("PART_LIST", filesPath);
            env.put("FILE", new File(this.torrent.parentPath, file.getPath()).getAbsolutePath());
            //FilenameUtils.concat(this.torrent.parentPath, file.getPath()));
            Process pr = pb.start();

            BufferedReader bre = new BufferedReader(new InputStreamReader(pr.getErrorStream()));
            String line;
            while ((line = bre.readLine()) != null) {
                System.err.println(line);
            }
            bre.close();

            int exitVal;
            if ((exitVal = pr.waitFor()) != 0)
                ;
            else
                logger.info("Files merged...");
        } catch (IOException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        } catch (InterruptedException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }
    }
}

From source file:ch.kostceco.tools.siardexcerpt.excerption.moduleexcerpt.impl.ExcerptCGrepModuleImpl.java

@Override
public boolean validate(File siardDatei, File outFile, String excerptString) throws ExcerptCGrepException {
    // Ausgabe -> Ersichtlich das SIARDexcerpt arbeitet
    int onWork = 41;

    boolean isValid = true;

    File fGrepExe = new File("resources" + File.separator + "grep" + File.separator + "grep.exe");
    String pathToGrepExe = fGrepExe.getAbsolutePath();
    if (!fGrepExe.exists()) {
        // grep.exe existiert nicht --> Abbruch
        getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_MODUL_C)
                + getTextResourceService().getText(ERROR_XML_C_MISSINGFILE, fGrepExe.getAbsolutePath()));
        return false;
    } else {//  w ww.  ja v a2s  .co  m
        File fMsys10dll = new File("resources" + File.separator + "grep" + File.separator + "msys-1.0.dll");
        if (!fMsys10dll.exists()) {
            // msys-1.0.dll existiert nicht --> Abbruch
            getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_MODUL_C)
                    + getTextResourceService().getText(ERROR_XML_C_MISSINGFILE, fMsys10dll.getAbsolutePath()));
            return false;
        }
    }

    File tempOutFile = new File(outFile.getAbsolutePath() + ".tmp");
    String content = "";

    // Record aus Maintable herausholen
    try {
        if (tempOutFile.exists()) {
            Util.deleteDir(tempOutFile);
        }

        /* Nicht vergessen in "src/main/resources/config/applicationContext-services.xml" beim
         * entsprechenden Modul die property anzugeben: <property name="configurationService"
         * ref="configurationService" /> */

        String name = getConfigurationService().getMaintableName();
        String folder = getConfigurationService().getMaintableFolder();
        String cell = getConfigurationService().getMaintablePrimarykeyCell();

        File fMaintable = new File(siardDatei.getAbsolutePath() + File.separator + "content" + File.separator
                + "schema0" + File.separator + folder + File.separator + folder + ".xml");

        try {
            // grep "<c11>7561234567890</c11>" table13.xml >> output.txt
            String command = "cmd /c \"" + pathToGrepExe + " \"<" + cell + ">" + excerptString + "</" + cell
                    + ">\" " + fMaintable.getAbsolutePath() + " >> " + tempOutFile.getAbsolutePath() + "\"";
            /* Das redirect Zeichen verunmglicht eine direkte eingabe. mit dem geschachtellten Befehl
             * gehts: cmd /c\"urspruenlicher Befehl\" */

            // System.out.println( command );

            Process proc = null;
            Runtime rt = null;

            getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_ELEMENT_OPEN, name));

            try {
                Util.switchOffConsole();
                rt = Runtime.getRuntime();
                proc = rt.exec(command.toString().split(" "));
                // .split(" ") ist notwendig wenn in einem Pfad ein Doppelleerschlag vorhanden ist!

                // Fehleroutput holen
                StreamGobbler errorGobbler = new StreamGobbler(proc.getErrorStream(), "ERROR");

                // Output holen
                StreamGobbler outputGobbler = new StreamGobbler(proc.getInputStream(), "OUTPUT");

                // Threads starten
                errorGobbler.start();
                outputGobbler.start();

                // Warte, bis wget fertig ist
                proc.waitFor();

                Util.switchOnConsole();

            } catch (Exception e) {
                getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_MODUL_C)
                        + getTextResourceService().getText(ERROR_XML_UNKNOWN, e.getMessage()));
                return false;
            } finally {
                if (proc != null) {
                    closeQuietly(proc.getOutputStream());
                    closeQuietly(proc.getInputStream());
                    closeQuietly(proc.getErrorStream());
                }
            }

            Scanner scanner = new Scanner(tempOutFile);
            content = "";
            try {
                content = scanner.useDelimiter("\\Z").next();
            } catch (Exception e) {
                // Grep ergab kein treffer Content Null
                content = "";
            }
            scanner.close();

            getMessageService()
                    .logError(getTextResourceService().getText(MESSAGE_XML_ELEMENT_CONTENT, content));
            getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_ELEMENT_CLOSE, name));

            if (tempOutFile.exists()) {
                Util.deleteDir(tempOutFile);
            }
            content = "";

            // Ende Grep

        } catch (Exception e) {
            getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_MODUL_C)
                    + getTextResourceService().getText(ERROR_XML_UNKNOWN, e.getMessage()));
            return false;
        }

    } catch (Exception e) {
        getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_MODUL_C)
                + getTextResourceService().getText(ERROR_XML_UNKNOWN, e.getMessage()));
        return false;
    }

    // Ende MainTable

    // grep der SubTables
    try {
        String name = null;
        String folder = null;
        String cell = null;

        InputStream fin = new FileInputStream(
                new File("configuration" + File.separator + "SIARDexcerpt.conf.xml"));
        SAXBuilder builder = new SAXBuilder();
        Document document = builder.build(fin);
        fin.close();

        /* read the document and for each subTable */
        Namespace ns = Namespace.getNamespace("");

        // select schema elements and loop
        List<Element> subtables = document.getRootElement().getChild("subtables", ns).getChildren("subtable",
                ns);
        for (Element subtable : subtables) {
            name = subtable.getChild("name", ns).getText();
            folder = subtable.getChild("folder", ns).getText();
            cell = subtable.getChild("foreignkeycell", ns).getText();

            // System.out.println( name + " - " + folder + " - " + cell );
            File fSubtable = new File(siardDatei.getAbsolutePath() + File.separator + "content" + File.separator
                    + "schema0" + File.separator + folder + File.separator + folder + ".xml");

            try {
                // grep "<c11>7561234567890</c11>" table13.xml >> output.txt
                String command = "cmd /c \"" + pathToGrepExe + " \"<" + cell + ">" + excerptString + "</" + cell
                        + ">\" " + fSubtable.getAbsolutePath() + " >> " + tempOutFile.getAbsolutePath() + "\"";
                /* Das redirect Zeichen verunmglicht eine direkte eingabe. mit dem geschachtellten Befehl
                 * gehts: cmd /c\"urspruenlicher Befehl\" */

                // System.out.println( command );

                Process proc = null;
                Runtime rt = null;

                getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_ELEMENT_OPEN, name));

                try {
                    Util.switchOffConsole();
                    rt = Runtime.getRuntime();
                    proc = rt.exec(command.toString().split(" "));
                    // .split(" ") ist notwendig wenn in einem Pfad ein Doppelleerschlag vorhanden ist!

                    // Fehleroutput holen
                    StreamGobbler errorGobbler = new StreamGobbler(proc.getErrorStream(), "ERROR");

                    // Output holen
                    StreamGobbler outputGobbler = new StreamGobbler(proc.getInputStream(), "OUTPUT");

                    // Threads starten
                    errorGobbler.start();
                    outputGobbler.start();

                    // Warte, bis wget fertig ist
                    proc.waitFor();

                    Util.switchOnConsole();

                } catch (Exception e) {
                    getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_MODUL_C)
                            + getTextResourceService().getText(ERROR_XML_UNKNOWN, e.getMessage()));
                    return false;
                } finally {
                    if (proc != null) {
                        closeQuietly(proc.getOutputStream());
                        closeQuietly(proc.getInputStream());
                        closeQuietly(proc.getErrorStream());
                    }
                }

                Scanner scanner = new Scanner(tempOutFile);
                content = "";
                try {
                    content = scanner.useDelimiter("\\Z").next();
                } catch (Exception e) {
                    // Grep ergab kein treffer Content Null
                    content = "";
                }
                scanner.close();

                getMessageService()
                        .logError(getTextResourceService().getText(MESSAGE_XML_ELEMENT_CONTENT, content));
                getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_ELEMENT_CLOSE, name));

                if (tempOutFile.exists()) {
                    Util.deleteDir(tempOutFile);
                }
                content = "";

                // Ende Grep

            } catch (Exception e) {
                getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_MODUL_C)
                        + getTextResourceService().getText(ERROR_XML_UNKNOWN, e.getMessage()));
                return false;
            }

            // Ende SubTables
            if (onWork == 41) {
                onWork = 2;
                System.out.print("-   ");
                System.out.print("\r");
            } else if (onWork == 11) {
                onWork = 12;
                System.out.print("\\   ");
                System.out.print("\r");
            } else if (onWork == 21) {
                onWork = 22;
                System.out.print("|   ");
                System.out.print("\r");
            } else if (onWork == 31) {
                onWork = 32;
                System.out.print("/   ");
                System.out.print("\r");
            } else {
                onWork = onWork + 1;
            }
        }
        System.out.print("   ");
        System.out.print("\r");
    } catch (Exception e) {
        getMessageService().logError(getTextResourceService().getText(MESSAGE_XML_MODUL_C)
                + getTextResourceService().getText(ERROR_XML_UNKNOWN, e.getMessage()));
        return false;
    }

    return isValid;
}

From source file:org.openbaton.marketplace.core.VNFPackageManagement.java

private void updateVims() throws IOException, InterruptedException, ClassNotFoundException, SDKException {

    NFVORequestor requestor = new NFVORequestor(obUsername, obPassword, "", obSslEnabled, obNfvoIp, obNfvoPort,
            "1");

    String cmd = "curl -u openbatonOSClient:secret -X POST http://" + obNfvoIp + ":" + obNfvoPort
            + "/oauth/token -H \"Accept:application/json\" -d username=" + obUsername + "&password="
            + obPassword + "&grant_type=password";

    log.debug("Executing command: " + cmd);

    Process process = Runtime.getRuntime().exec(cmd);
    int res = process.waitFor();
    BufferedReader stdInput = new BufferedReader(new InputStreamReader(process.getInputStream()));

    BufferedReader stdError = new BufferedReader(new InputStreamReader(process.getErrorStream()));

    String s;/*from w  ww  .  j a  v  a  2 s.com*/
    String output = "";
    String imageId = null;
    if (res != 0) {
        log.warn("Probably the upload of the image went wrong!");
        while ((s = stdError.readLine()) != null) {
            log.warn(s);
        }
    } else {
        while ((s = stdInput.readLine()) != null) {

            output += s;
        }
    }

    log.debug("Result is: " + output);

    String token = new GsonBuilder().create().fromJson(output, JsonObject.class).get("value").getAsString();

    ProjectAgent projectAgent = requestor.getProjectAgent();
    for (Project project : projectAgent.findAll()) {
        requestor.setProjectId(project.getId());
        VimInstanceRestAgent vimInstanceRestAgent = requestor.getVimInstanceAgent();
        vimInstanceRestAgent.setProjectId(project.getId());
        for (VimInstance vimInstance : vimInstanceRestAgent.findAll()) {
            String vimId = vimInstance.getId();
            log.debug("Found Vim Id: " + vimId);
            Runtime.getRuntime()
                    .exec("curl POST -H \"Content-type: application/json\" -H \"Authorization: Bearer " + token
                            + "\" http://" + obNfvoIp + ":" + obNfvoPort + "/api/v1/datacenters/" + vimId
                            + "/refresh");
        }
    }
}

From source file:cc.arduino.Compiler.java

private void callArduinoBuilder(TargetBoard board, TargetPlatform platform, TargetPackage aPackage,
        String vidpid, BuilderAction action, OutputStream outStream, OutputStream errStream)
        throws RunnerException {
    List<String> cmd = new ArrayList<>();
    cmd.add(BaseNoGui.getContentFile("arduino-builder").getAbsolutePath());
    cmd.add(action.value);/* w ww  . j  a  v  a  2s  .co  m*/
    cmd.add("-logger=machine");

    File installedPackagesFolder = new File(BaseNoGui.getSettingsFolder(), "packages");

    addPathFlagIfPathExists(cmd, "-hardware", BaseNoGui.getHardwareFolder());
    addPathFlagIfPathExists(cmd, "-hardware", installedPackagesFolder);
    addPathFlagIfPathExists(cmd, "-hardware", BaseNoGui.getSketchbookHardwareFolder());

    addPathFlagIfPathExists(cmd, "-tools", BaseNoGui.getContentFile("tools-builder"));
    addPathFlagIfPathExists(cmd, "-tools", Paths.get(BaseNoGui.getHardwarePath(), "tools", "avr").toFile());
    addPathFlagIfPathExists(cmd, "-tools", installedPackagesFolder);

    addPathFlagIfPathExists(cmd, "-built-in-libraries", BaseNoGui.getContentFile("libraries"));
    addPathFlagIfPathExists(cmd, "-libraries", BaseNoGui.getSketchbookLibrariesFolder().folder);

    String fqbn = Stream.of(aPackage.getId(), platform.getId(), board.getId(), boardOptions(board))
            .filter(s -> !s.isEmpty()).collect(Collectors.joining(":"));
    cmd.add("-fqbn=" + fqbn);

    if (!"".equals(vidpid)) {
        cmd.add("-vid-pid=" + vidpid);
    }

    cmd.add("-ide-version=" + BaseNoGui.REVISION);
    cmd.add("-build-path");
    cmd.add(buildPath);
    cmd.add("-warnings=" + PreferencesData.get("compiler.warning_level"));

    if (PreferencesData.getBoolean("compiler.cache_core") == true && buildCache != null) {
        cmd.add("-build-cache");
        cmd.add(buildCache.getAbsolutePath());
    }

    PreferencesData.getMap().subTree("runtime.build_properties_custom").entrySet().stream()
            .forEach(kv -> cmd.add("-prefs=" + kv.getKey() + "=" + kv.getValue()));

    cmd.add("-prefs=build.warn_data_percentage=" + PreferencesData.get("build.warn_data_percentage"));

    for (Map.Entry<String, String> entry : BaseNoGui.getBoardPreferences().entrySet()) {
        if (entry.getKey().startsWith("runtime.tools")) {
            cmd.add("-prefs=" + entry.getKey() + "=" + entry.getValue());
        }
    }

    //commandLine.addArgument("-debug-level=10", false);

    if (verbose) {
        cmd.add("-verbose");
    }

    cmd.add(pathToSketch.getAbsolutePath());

    if (verbose) {
        System.out.println(StringUtils.join(cmd, ' '));
    }

    int result;
    try {
        Process proc = ProcessUtils.exec(cmd.toArray(new String[0]));
        MessageSiphon in = new MessageSiphon(proc.getInputStream(), (msg) -> {
            try {
                outStream.write(msg.getBytes());
            } catch (Exception e) {
                exception = new RunnerException(e);
            }
        });
        MessageSiphon err = new MessageSiphon(proc.getErrorStream(), (msg) -> {
            try {
                errStream.write(msg.getBytes());
            } catch (Exception e) {
                exception = new RunnerException(e);
            }
        });

        in.join();
        err.join();
        result = proc.waitFor();
    } catch (Exception e) {
        throw new RunnerException(e);
    }

    if (exception != null)
        throw exception;

    if (result > 1) {
        System.err.println(I18n.format(tr("{0} returned {1}"), cmd.get(0), result));
    }

    if (result != 0) {
        RunnerException re = new RunnerException(
                I18n.format(tr("Error compiling for board {0}."), board.getName()));
        re.hideStackTrace();
        throw re;
    }
}

From source file:es.bsc.servicess.ide.PackagingUtils.java

private static void preInstrumentOrchestration(String runtime, String orchClass, List<String> methods,
        IFolder classes, List<Dependency> depLibraries, IProgressMonitor myProgressMonitor)
        throws CoreException {
    Runtime rt = Runtime.getRuntime();
    if (runtime != null && orchClass != null && methods != null && methods.size() > 0) {
        String classpath = new String();
        for (Dependency d : depLibraries) {
            if (d.getType().equalsIgnoreCase(ProjectMetadata.JAR_DEP_TYPE)
                    || d.getType().equalsIgnoreCase(ProjectMetadata.CLASS_FOLDER_DEP_TYPE))
                classpath = classpath.concat(":" + d.getLocation());
        }/* ww w.j a v  a2  s  . c o  m*/
        boolean first = true;
        String methodsString = new String();
        for (String m : methods) {
            if (first) {
                methodsString = methodsString.concat(m);
                first = false;
            } else
                methodsString = methodsString.concat(" " + m);
        }
        String command = new String(runtime + "/../scripts/pre_instrument.sh "
                + classes.getLocation().toOSString() + classpath + " " + runtime + "/.." + " "
                + classes.getLocation().toOSString() + " " + orchClass + " " + methodsString);
        log.debug("Command to exec: " + command);
        Process ps;
        try {
            ps = rt.exec(command);
            BufferedReader stdInput = new BufferedReader(new InputStreamReader(ps.getInputStream()));

            BufferedReader stdError = new BufferedReader(new InputStreamReader(ps.getErrorStream()));
            String s = null;
            // read the output from the command
            log.debug("Here is the standard output of the command:\n");
            while ((s = stdInput.readLine()) != null) {
                log.debug(s);
            }

            // read any errors from the attempted command
            log.debug("Here is the standard error of the command (if any):\n");
            while ((s = stdError.readLine()) != null) {
                log.debug(s);
            }

            // if (ps.exitValue() != 0){
            if (ps.waitFor() != 0) {
                throw (new CoreException(
                        new Status(IStatus.ERROR, Activator.PLUGIN_ID, "metadata info not found")));
            }
        } catch (IOException e) {
            CoreException ce = new CoreException(
                    new Status(IStatus.ERROR, Activator.PLUGIN_ID, e.getMessage(), e));
            ce.setStackTrace(e.getStackTrace());
            throw (ce);
        } catch (InterruptedException e) {
            CoreException ce = new CoreException(
                    new Status(IStatus.ERROR, Activator.PLUGIN_ID, e.getMessage(), e));
            ce.setStackTrace(e.getStackTrace());
            throw (ce);
        }
    } else {
        throw (new CoreException(new Status(IStatus.ERROR, Activator.PLUGIN_ID, "metadata info not found")));
    }
}

From source file:es.bsc.servicess.ide.PackagingUtils.java

private static void instrumentOrchestrations(String runtime, String[] cls, IFolder classes,
        List<Dependency> depLibraries, IProgressMonitor myProgressMonitor) throws CoreException {
    Runtime rt = Runtime.getRuntime();
    if (runtime != null && cls != null) {
        String classpath = new String();
        for (Dependency d : depLibraries) {
            if (d.getType().equalsIgnoreCase(ProjectMetadata.JAR_DEP_TYPE)
                    || d.getType().equalsIgnoreCase(ProjectMetadata.CLASS_FOLDER_DEP_TYPE))
                classpath = classpath.concat(":" + d.getLocation());
        }/*from w  w  w  .j a va2 s .c o  m*/
        for (String cl : cls) {
            String command = new String(
                    runtime + "/../scripts/instrument.sh " + cl + " " + classes.getLocation().toOSString()
                            + classpath + " " + runtime + "/.." + " " + classes.getLocation().toOSString());
            log.debug("Command to exec: " + command);
            Process ps;
            try {
                ps = rt.exec(command);
                BufferedReader stdInput = new BufferedReader(new InputStreamReader(ps.getInputStream()));

                BufferedReader stdError = new BufferedReader(new InputStreamReader(ps.getErrorStream()));
                String s = null;
                // read the output from the command
                log.debug("Here is the standard output of the command:\n");
                while ((s = stdInput.readLine()) != null) {
                    log.debug(s);
                }

                // read any errors from the attempted command
                log.debug("Here is the standard error of the command (if any):\n");
                while ((s = stdError.readLine()) != null) {
                    log.debug(s);
                }

                // if (ps.exitValue() != 0){
                if (ps.waitFor() != 0) {
                    throw (new CoreException(
                            new Status(IStatus.ERROR, Activator.PLUGIN_ID, "metadata info not found")));
                }
            } catch (IOException e) {
                CoreException ce = new CoreException(
                        new Status(IStatus.ERROR, Activator.PLUGIN_ID, e.getMessage(), e));
                ce.setStackTrace(e.getStackTrace());
                throw (ce);
            } catch (InterruptedException e) {
                CoreException ce = new CoreException(
                        new Status(IStatus.ERROR, Activator.PLUGIN_ID, e.getMessage(), e));
                ce.setStackTrace(e.getStackTrace());
                throw (ce);
            }

        }
    } else {
        throw (new CoreException(new Status(IStatus.ERROR, Activator.PLUGIN_ID, "metadata info not found")));
    }

}