List of usage examples for java.lang UnsatisfiedLinkError getMessage
public String getMessage()
From source file:com.lfv.lanzius.Main.java
public static void main(String[] args) { /*/*from w w w . ja v a 2s . c om*/ * debug levels: * error - Runtime errors or unexpected conditions. Expect these to be immediately visible on a status console. See also Internationalization. * warn - Use of deprecated APIs, poor use of API, 'almost' errors, other runtime situations that are undesirable or unexpected, but not necessarily "wrong". Expect these to be immediately visible on a status console. See also Internationalization. * info - Interesting runtime events (startup/shutdown). Expect these to be immediately visible on a console, so be conservative and keep to a minimum. See also Internationalization. * debug - detailed information on the flow through the system. Expect these to be written to logs only. */ Log log = null; DOMConfigurator conf = new DOMConfigurator(); DOMConfigurator.configure("data/properties/loggingproperties.xml"); System.setProperty("org.apache.commons.logging.Log", "org.apache.commons.logging.impl.Log4JLogger"); try { if (args.length >= 1) { // Help if (args[0].startsWith("-h")) { printUsage(); return; } // List devices else if (args[0].startsWith("-l")) { AudioTest.listDevices(); return; } // Test seleted device else if (args[0].startsWith("-d")) { System.setProperty("org.apache.commons.logging.Log", "org.apache.commons.logging.impl.SimpleLog"); System.setProperty("org.apache.commons.logging.simplelog.defaultlog", "warn"); try { String option = "all"; if (args.length >= 4) option = args[3]; if (option.equals("loop:direct")) AudioTest.testDevicesDirect(Integer.parseInt(args[1]), Integer.parseInt(args[2])); else { if (option.indexOf("debug") != -1) System.setProperty("org.apache.commons.logging.simplelog.defaultlog", "debug"); AudioTest.testDevices(Integer.parseInt(args[1]), Integer.parseInt(args[2]), option, (args.length >= 5) ? args[4] : null, (args.length >= 6) ? args[5] : null, (args.length >= 7) ? args[6] : null); } } catch (Exception ex) { System.out.println(); System.out.println(Config.VERSION); System.out.println(); System.out.println("Usage:"); System.out.println( " yada.jar -d output_device input_device <option> <jitter_buffer> <output_buffer> <input_buffer>"); System.out.println(" option:"); System.out.println(" all(default)"); System.out.println(" clip"); System.out.println(" loop:jspeex"); System.out.println(" loop:null"); System.out.println(" loop:direct"); System.out.println(" loopdebug:jspeex"); System.out.println(" loopdebug:null"); System.out.println(" jitter_buffer:"); System.out.println(" size of jitter buffer in packets (1-20)"); System.out.println(" output_buffer:"); System.out.println(" size of output buffer in packets (1.0-4.0)"); System.out.println(" input_buffer:"); System.out.println(" size of input buffer in packets (1.0-4.0)"); System.out.println(); if (AudioTest.showStackTrace && !(ex instanceof ArrayIndexOutOfBoundsException)) ex.printStackTrace(); } //System.out.println("Exiting..."); return; } else if (args[0].startsWith("-m")) { System.setProperty("org.apache.commons.logging.Log", "org.apache.commons.logging.impl.SimpleLog"); System.setProperty("org.apache.commons.logging.simplelog.defaultlog", "warn"); try { AudioTest.testMicrophoneLevel(Integer.parseInt(args[1])); } catch (Exception ex) { System.out.println(); System.out.println(Config.VERSION); System.out.println(); System.out.println("Usage:"); System.out.println(" yada.jar -m input_device"); System.out.println(); if (AudioTest.showStackTrace && !(ex instanceof ArrayIndexOutOfBoundsException)) ex.printStackTrace(); } return; } else if (args[0].startsWith("-s")) { Packet.randomSeed = 9182736455L ^ System.currentTimeMillis(); if (args.length > 2 && args[1].startsWith("-configuration")) { String configFilename = args[2]; if (args.length > 4 && args[3].startsWith("-exercise")) { String exerciseFilename = args[4]; LanziusServer.start(configFilename, exerciseFilename); } else { LanziusServer.start(configFilename); } } else { LanziusServer.start(); } return; } else if (args[0].startsWith("-f")) { System.setProperty("org.apache.commons.logging.Log", "org.apache.commons.logging.impl.SimpleLog"); System.setProperty( "org.apache.commons.logging.simplelog.log.com.lfv.lanzius.application.FootSwitchController", "debug"); try { System.out.println("Starting footswitch controller test using device " + args[1]); try { boolean inverted = false; if (args.length >= 3) inverted = args[2].toLowerCase().startsWith("inv"); FootSwitchController c = new FootSwitchController(null, args[1], Constants.PERIOD_FTSW_CONNECTED, inverted); c.start(); Thread.sleep(30000); } catch (UnsatisfiedLinkError err) { if (args.length > 1) System.out.println("UnsatisfiedLinkError: " + err.getMessage()); else throw new ArrayIndexOutOfBoundsException(); System.out.println("Missing ftsw library (ftsw.dll or libftsw.so)"); if (!args[1].equalsIgnoreCase("ftdi")) System.out .println("Missing rxtxSerial library (rxtxSerial.dll or librxtxSerial.so)"); if (AudioTest.showStackTrace) err.printStackTrace(); } } catch (Exception ex) { if (ex instanceof NoSuchPortException) System.out.println("The serial port " + args[1] + " does not exist!"); else if (ex instanceof PortInUseException) System.out.println("The serial port " + args[1] + " is already in use!"); System.out.println(); System.out.println(Config.VERSION); System.out.println(); System.out.println("Usage:"); System.out.println(" yada.jar -f interface <invert>"); System.out.println(" interface:"); System.out.println(" ftdi"); System.out.println(" comport (COMx or /dev/ttyx)"); System.out.println(" invert:"); System.out.println(" true"); System.out.println(" false (default)"); System.out.println(); if (AudioTest.showStackTrace && !(ex instanceof ArrayIndexOutOfBoundsException)) ex.printStackTrace(); } return; } else if (args[0].startsWith("-c")) { Packet.randomSeed = 7233103157L ^ System.currentTimeMillis(); if (args.length >= 2) { try { int id = Integer.valueOf(args[1]); if (id <= 0) throw new NumberFormatException(); Controller c = Controller.getInstance(); if (args.length >= 3) { if (args[2].equalsIgnoreCase("test")) { c.setAutoTester(true); } } c.init(id); return; } catch (NumberFormatException ex) { printUsage(); } } else { Controller.getInstance().init(0); } } else printUsage(); } else printUsage(); } catch (Throwable t) { if (log == null) log = LogFactory.getLog(Main.class); log.error("Unhandled exception or error", t); } }
From source file:com.jug.MotherMachine.java
/** * PROJECT MAIN//from w w w. j av a 2 s .c om * ============ * * @param args * muh! */ public static void main(final String[] args) { try { final MotherMachine main = new MotherMachine(); guiFrame = new JFrame("Interactive MotherMachine"); main.initMainWindow(guiFrame); props = main.loadParams(); BGREM_TEMPLATE_XMIN = Integer .parseInt(props.getProperty("BGREM_TEMPLATE_XMIN", Integer.toString(BGREM_TEMPLATE_XMIN))); BGREM_TEMPLATE_XMAX = Integer .parseInt(props.getProperty("BGREM_TEMPLATE_XMAX", Integer.toString(BGREM_TEMPLATE_XMAX))); BGREM_X_OFFSET = Integer .parseInt(props.getProperty("BGREM_X_OFFSET", Integer.toString(BGREM_X_OFFSET))); GL_OFFSET_BOTTOM = Integer .parseInt(props.getProperty("GL_OFFSET_BOTTOM", Integer.toString(GL_OFFSET_BOTTOM))); GL_OFFSET_TOP = Integer.parseInt(props.getProperty("GL_OFFSET_TOP", Integer.toString(GL_OFFSET_TOP))); GL_OFFSET_LATERAL = Integer .parseInt(props.getProperty("GL_OFFSET_LATERAL", Integer.toString(GL_OFFSET_LATERAL))); MIN_CELL_LENGTH = Integer .parseInt(props.getProperty("MIN_CELL_LENGTH", Integer.toString(MIN_CELL_LENGTH))); MIN_GAP_CONTRAST = Double .parseDouble(props.getProperty("MIN_GAP_CONTRAST", Double.toString(MIN_GAP_CONTRAST))); SIGMA_PRE_SEGMENTATION_X = Double.parseDouble( props.getProperty("SIGMA_PRE_SEGMENTATION_X", Double.toString(SIGMA_PRE_SEGMENTATION_X))); SIGMA_PRE_SEGMENTATION_Y = Double.parseDouble( props.getProperty("SIGMA_PRE_SEGMENTATION_Y", Double.toString(SIGMA_PRE_SEGMENTATION_Y))); SIGMA_GL_DETECTION_X = Double .parseDouble(props.getProperty("SIGMA_GL_DETECTION_X", Double.toString(SIGMA_GL_DETECTION_X))); SIGMA_GL_DETECTION_Y = Double .parseDouble(props.getProperty("SIGMA_GL_DETECTION_Y", Double.toString(SIGMA_GL_DETECTION_Y))); DEFAULT_PATH = props.getProperty("DEFAULT_PATH", DEFAULT_PATH); GUI_POS_X = Integer.parseInt(props.getProperty("GUI_POS_X", Integer.toString(DEFAULT_GUI_POS_X))); GUI_POS_Y = Integer.parseInt(props.getProperty("GUI_POS_Y", Integer.toString(DEFAULT_GUI_POS_X))); GUI_WIDTH = Integer.parseInt(props.getProperty("GUI_WIDTH", Integer.toString(GUI_WIDTH))); GUI_HEIGHT = Integer.parseInt(props.getProperty("GUI_HEIGHT", Integer.toString(GUI_HEIGHT))); GUI_CONSOLE_WIDTH = Integer .parseInt(props.getProperty("GUI_CONSOLE_WIDTH", Integer.toString(GUI_CONSOLE_WIDTH))); // Iterate over all currently attached monitors and check if sceen position is actually possible, // otherwise fall back to the DEFAULT values and ignore the ones coming from the properties-file. boolean pos_ok = false; final GraphicsEnvironment ge = GraphicsEnvironment.getLocalGraphicsEnvironment(); final GraphicsDevice[] gs = ge.getScreenDevices(); for (int i = 0; i < gs.length; i++) { final DisplayMode dm = gs[i].getDisplayMode(); if (gs[i].getDefaultConfiguration().getBounds() .contains(new java.awt.Point(GUI_POS_X, GUI_POS_Y))) { pos_ok = true; } } // None of the screens contained the top-left window coordinates --> fall back onto default values... if (!pos_ok) { GUI_POS_X = DEFAULT_GUI_POS_X; GUI_POS_Y = DEFAULT_GUI_POS_Y; } String path = props.getProperty("import_path", System.getProperty("user.home")); final File fPath = main.showStartupDialog(guiFrame, path); path = fPath.getAbsolutePath(); props.setProperty("import_path", fPath.getAbsolutePath()); // Setting up console window and window snapper... main.initConsoleWindow(); main.showConsoleWindow(); final JFrameSnapper snapper = new JFrameSnapper(); snapper.addFrame(main.frameConsoleWindow); snapper.addFrame(guiFrame); // --------------------------------------------------- main.processDataFromFolder(path); // --------------------------------------------------- System.out.print("Build and show GUI..."); // show loaded and annotated data ImageJFunctions.show(main.imgRaw, "Rotated & cropped raw data"); ImageJFunctions.show(main.imgTemp, "Temporary"); ImageJFunctions.show(main.imgAnnotated, "Annotated ARGB data"); final MotherMachineGui gui = new MotherMachineGui(new MotherMachineModel(main)); gui.setVisible(true); main.ij = new ImageJ(); guiFrame.add(gui); guiFrame.setSize(GUI_WIDTH, GUI_HEIGHT); guiFrame.setLocation(GUI_POS_X, GUI_POS_Y); guiFrame.setVisible(true); SwingUtilities.invokeLater(new Runnable() { @Override public void run() { snapper.snapFrames(main.frameConsoleWindow, guiFrame, JFrameSnapper.EAST); } }); System.out.println(" done!"); } catch (final UnsatisfiedLinkError ulr) { JOptionPane.showMessageDialog(MotherMachine.guiFrame, "Could initialize Gurobi.\n" + "You might not have installed Gurobi properly or you miss a valid license.\n" + "Please visit 'www.gurobi.com' for further information.\n\n" + ulr.getMessage(), "Gurobi Error?", JOptionPane.ERROR_MESSAGE); } }
From source file:com.jug.MoMA.java
/** * PROJECT MAIN/*from w w w . j ava 2 s .c om*/ * * @param args */ public static void main(final String[] args) { if (showIJ) new ImageJ(); // // ===== set look and feel ======================================================================== // try { // // Set cross-platform Java L&F (also called "Metal") // UIManager.setLookAndFeel( // UIManager.getCrossPlatformLookAndFeelClassName() ); // } catch ( final UnsupportedLookAndFeelException e ) { // // handle exception // } catch ( final ClassNotFoundException e ) { // // handle exception // } catch ( final InstantiationException e ) { // // handle exception // } catch ( final IllegalAccessException e ) { // // handle exception // } // ===== command line parsing ====================================================================== // create Options object & the parser final Options options = new Options(); final CommandLineParser parser = new BasicParser(); // defining command line options final Option help = new Option("help", "print this message"); final Option headless = new Option("h", "headless", false, "start without user interface (note: input-folder must be given!)"); headless.setRequired(false); final Option timeFirst = new Option("tmin", "min_time", true, "first time-point to be processed"); timeFirst.setRequired(false); final Option timeLast = new Option("tmax", "max_time", true, "last time-point to be processed"); timeLast.setRequired(false); final Option optRange = new Option("orange", "opt_range", true, "initial optimization range"); optRange.setRequired(false); final Option numChannelsOption = new Option("c", "channels", true, "number of channels to be loaded and analyzed."); numChannelsOption.setRequired(true); final Option minChannelIdxOption = new Option("cmin", "min_channel", true, "the smallest channel index (usually 0 or 1, default is 1)."); minChannelIdxOption.setRequired(false); final Option infolder = new Option("i", "infolder", true, "folder to read data from"); infolder.setRequired(false); final Option outfolder = new Option("o", "outfolder", true, "folder to write preprocessed data to (equals infolder if not given)"); outfolder.setRequired(false); final Option userProps = new Option("p", "props", true, "properties file to be loaded (mm.properties)"); userProps.setRequired(false); options.addOption(help); options.addOption(headless); options.addOption(numChannelsOption); options.addOption(minChannelIdxOption); options.addOption(timeFirst); options.addOption(timeLast); options.addOption(optRange); options.addOption(infolder); options.addOption(outfolder); options.addOption(userProps); // get the commands parsed CommandLine cmd = null; try { cmd = parser.parse(options, args); } catch (final ParseException e1) { final HelpFormatter formatter = new HelpFormatter(); formatter.printHelp( "... [-p props-file] -i in-folder [-o out-folder] -c <num-channels> [-cmin start-channel-ids] [-tmin idx] [-tmax idx] [-orange num-frames] [-headless]", "", options, "Error: " + e1.getMessage()); System.exit(0); } if (cmd.hasOption("help")) { final HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("... -i <in-folder> -o [out-folder] [-headless]", options); System.exit(0); } if (cmd.hasOption("h")) { System.out.println(">>> Starting MM in headless mode."); HEADLESS = true; if (!cmd.hasOption("i")) { final HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("Headless-mode requires option '-i <in-folder>'...", options); System.exit(0); } } File inputFolder = null; if (cmd.hasOption("i")) { inputFolder = new File(cmd.getOptionValue("i")); if (!inputFolder.isDirectory()) { System.out.println("Error: Input folder is not a directory!"); System.exit(2); } if (!inputFolder.canRead()) { System.out.println("Error: Input folder cannot be read!"); System.exit(2); } } File outputFolder = null; if (!cmd.hasOption("o")) { if (inputFolder == null) { System.out.println( "Error: Output folder would be set to a 'null' input folder! Please check your command line arguments..."); System.exit(3); } outputFolder = inputFolder; STATS_OUTPUT_PATH = outputFolder.getAbsolutePath(); } else { outputFolder = new File(cmd.getOptionValue("o")); if (!outputFolder.isDirectory()) { System.out.println("Error: Output folder is not a directory!"); System.exit(3); } if (!inputFolder.canWrite()) { System.out.println("Error: Output folder cannot be written to!"); System.exit(3); } STATS_OUTPUT_PATH = outputFolder.getAbsolutePath(); } fileUserProps = null; if (cmd.hasOption("p")) { fileUserProps = new File(cmd.getOptionValue("p")); } if (cmd.hasOption("cmin")) { minChannelIdx = Integer.parseInt(cmd.getOptionValue("cmin")); } if (cmd.hasOption("c")) { numChannels = Integer.parseInt(cmd.getOptionValue("c")); } if (cmd.hasOption("tmin")) { minTime = Integer.parseInt(cmd.getOptionValue("tmin")); } if (cmd.hasOption("tmax")) { maxTime = Integer.parseInt(cmd.getOptionValue("tmax")); } if (cmd.hasOption("orange")) { initOptRange = Integer.parseInt(cmd.getOptionValue("orange")); } // ******** CHECK GUROBI ********* CHECK GUROBI ********* CHECK GUROBI ********* final String jlp = System.getProperty("java.library.path"); // System.out.println( jlp ); try { new GRBEnv("MoMA_gurobi.log"); } catch (final GRBException e) { final String msgs = "Initial Gurobi test threw exception... check your Gruobi setup!\n\nJava library path: " + jlp; if (HEADLESS) { System.out.println(msgs); } else { JOptionPane.showMessageDialog(MoMA.guiFrame, msgs, "Gurobi Error?", JOptionPane.ERROR_MESSAGE); } e.printStackTrace(); System.exit(98); } catch (final UnsatisfiedLinkError ulr) { final String msgs = "Could initialize Gurobi.\n" + "You might not have installed Gurobi properly or you miss a valid license.\n" + "Please visit 'www.gurobi.com' for further information.\n\n" + ulr.getMessage() + "\nJava library path: " + jlp; if (HEADLESS) { System.out.println(msgs); } else { JOptionPane.showMessageDialog(MoMA.guiFrame, msgs, "Gurobi Error?", JOptionPane.ERROR_MESSAGE); ulr.printStackTrace(); } System.out.println("\n>>>>> Java library path: " + jlp + "\n"); System.exit(99); } // ******* END CHECK GUROBI **** END CHECK GUROBI **** END CHECK GUROBI ******** final MoMA main = new MoMA(); if (!HEADLESS) { guiFrame = new JFrame(); main.initMainWindow(guiFrame); } System.out.println("VERSION: " + VERSION_STRING); props = main.loadParams(); BGREM_TEMPLATE_XMIN = Integer .parseInt(props.getProperty("BGREM_TEMPLATE_XMIN", Integer.toString(BGREM_TEMPLATE_XMIN))); BGREM_TEMPLATE_XMAX = Integer .parseInt(props.getProperty("BGREM_TEMPLATE_XMAX", Integer.toString(BGREM_TEMPLATE_XMAX))); BGREM_X_OFFSET = Integer.parseInt(props.getProperty("BGREM_X_OFFSET", Integer.toString(BGREM_X_OFFSET))); GL_WIDTH_IN_PIXELS = Integer .parseInt(props.getProperty("GL_WIDTH_IN_PIXELS", Integer.toString(GL_WIDTH_IN_PIXELS))); MOTHER_CELL_BOTTOM_TRICK_MAX_PIXELS = Integer.parseInt(props.getProperty( "MOTHER_CELL_BOTTOM_TRICK_MAX_PIXELS", Integer.toString(MOTHER_CELL_BOTTOM_TRICK_MAX_PIXELS))); GL_FLUORESCENCE_COLLECTION_WIDTH_IN_PIXELS = Integer .parseInt(props.getProperty("GL_FLUORESCENCE_COLLECTION_WIDTH_IN_PIXELS", Integer.toString(GL_FLUORESCENCE_COLLECTION_WIDTH_IN_PIXELS))); GL_OFFSET_BOTTOM = Integer .parseInt(props.getProperty("GL_OFFSET_BOTTOM", Integer.toString(GL_OFFSET_BOTTOM))); if (GL_OFFSET_BOTTOM == -1) { GL_OFFSET_BOTTOM_AUTODETECT = true; } else { GL_OFFSET_BOTTOM_AUTODETECT = false; } GL_OFFSET_TOP = Integer.parseInt(props.getProperty("GL_OFFSET_TOP", Integer.toString(GL_OFFSET_TOP))); GL_OFFSET_LATERAL = Integer .parseInt(props.getProperty("GL_OFFSET_LATERAL", Integer.toString(GL_OFFSET_LATERAL))); MIN_CELL_LENGTH = Integer.parseInt(props.getProperty("MIN_CELL_LENGTH", Integer.toString(MIN_CELL_LENGTH))); MIN_GAP_CONTRAST = Float .parseFloat(props.getProperty("MIN_GAP_CONTRAST", Float.toString(MIN_GAP_CONTRAST))); SIGMA_PRE_SEGMENTATION_X = Float.parseFloat( props.getProperty("SIGMA_PRE_SEGMENTATION_X", Float.toString(SIGMA_PRE_SEGMENTATION_X))); SIGMA_PRE_SEGMENTATION_Y = Float.parseFloat( props.getProperty("SIGMA_PRE_SEGMENTATION_Y", Float.toString(SIGMA_PRE_SEGMENTATION_Y))); SIGMA_GL_DETECTION_X = Float .parseFloat(props.getProperty("SIGMA_GL_DETECTION_X", Float.toString(SIGMA_GL_DETECTION_X))); SIGMA_GL_DETECTION_Y = Float .parseFloat(props.getProperty("SIGMA_GL_DETECTION_Y", Float.toString(SIGMA_GL_DETECTION_Y))); SEGMENTATION_MIX_CT_INTO_PMFRF = Float.parseFloat(props.getProperty("SEGMENTATION_MIX_CT_INTO_PMFRF", Float.toString(SEGMENTATION_MIX_CT_INTO_PMFRF))); SEGMENTATION_CLASSIFIER_MODEL_FILE = props.getProperty("SEGMENTATION_CLASSIFIER_MODEL_FILE", SEGMENTATION_CLASSIFIER_MODEL_FILE); CELLSIZE_CLASSIFIER_MODEL_FILE = props.getProperty("CELLSIZE_CLASSIFIER_MODEL_FILE", CELLSIZE_CLASSIFIER_MODEL_FILE); DEFAULT_PATH = props.getProperty("DEFAULT_PATH", DEFAULT_PATH); GUROBI_TIME_LIMIT = Double .parseDouble(props.getProperty("GUROBI_TIME_LIMIT", Double.toString(GUROBI_TIME_LIMIT))); GUROBI_MAX_OPTIMALITY_GAP = Double.parseDouble( props.getProperty("GUROBI_MAX_OPTIMALITY_GAP", Double.toString(GUROBI_MAX_OPTIMALITY_GAP))); GUI_POS_X = Integer.parseInt(props.getProperty("GUI_POS_X", Integer.toString(DEFAULT_GUI_POS_X))); GUI_POS_Y = Integer.parseInt(props.getProperty("GUI_POS_Y", Integer.toString(DEFAULT_GUI_POS_X))); GUI_WIDTH = Integer.parseInt(props.getProperty("GUI_WIDTH", Integer.toString(GUI_WIDTH))); GUI_HEIGHT = Integer.parseInt(props.getProperty("GUI_HEIGHT", Integer.toString(GUI_HEIGHT))); GUI_CONSOLE_WIDTH = Integer .parseInt(props.getProperty("GUI_CONSOLE_WIDTH", Integer.toString(GUI_CONSOLE_WIDTH))); if (!HEADLESS) { // Iterate over all currently attached monitors and check if sceen // position is actually possible, // otherwise fall back to the DEFAULT values and ignore the ones // coming from the properties-file. boolean pos_ok = false; final GraphicsEnvironment ge = GraphicsEnvironment.getLocalGraphicsEnvironment(); final GraphicsDevice[] gs = ge.getScreenDevices(); for (int i = 0; i < gs.length; i++) { if (gs[i].getDefaultConfiguration().getBounds() .contains(new java.awt.Point(GUI_POS_X, GUI_POS_Y))) { pos_ok = true; } } // None of the screens contained the top-left window coordinates --> // fall back onto default values... if (!pos_ok) { GUI_POS_X = DEFAULT_GUI_POS_X; GUI_POS_Y = DEFAULT_GUI_POS_Y; } } String path = props.getProperty("import_path", System.getProperty("user.home")); if (inputFolder == null || inputFolder.equals("")) { inputFolder = main.showStartupDialog(guiFrame, path); } System.out.println("Default filename decoration = " + inputFolder.getName()); defaultFilenameDecoration = inputFolder.getName(); path = inputFolder.getAbsolutePath(); props.setProperty("import_path", path); GrowthLineSegmentationMagic.setClassifier(SEGMENTATION_CLASSIFIER_MODEL_FILE, ""); if (!HEADLESS) { // Setting up console window... main.initConsoleWindow(); main.showConsoleWindow(true); } // ------------------------------------------------------------------------------------------------------ // ------------------------------------------------------------------------------------------------------ final MoMAModel mmm = new MoMAModel(main); instance = main; try { main.processDataFromFolder(path, minTime, maxTime, minChannelIdx, numChannels); } catch (final Exception e) { e.printStackTrace(); System.exit(11); } // ------------------------------------------------------------------------------------------------------ // ------------------------------------------------------------------------------------------------------ // show loaded and annotated data if (showIJ) { new ImageJ(); ImageJFunctions.show(main.imgRaw, "Rotated & cropped raw data"); // ImageJFunctions.show( main.imgTemp, "Temporary" ); // ImageJFunctions.show( main.imgAnnotated, "Annotated ARGB data" ); // main.getCellSegmentedChannelImgs() // ImageJFunctions.show( main.imgClassified, "Classification" ); // ImageJFunctions.show( main.getCellSegmentedChannelImgs(), "Segmentation" ); } gui = new MoMAGui(mmm); if (!HEADLESS) { System.out.print("Build GUI..."); main.showConsoleWindow(false); // final JFrameSnapper snapper = new JFrameSnapper(); // snapper.addFrame( main.frameConsoleWindow ); // snapper.addFrame( guiFrame ); gui.setVisible(true); guiFrame.add(gui); guiFrame.setSize(GUI_WIDTH, GUI_HEIGHT); guiFrame.setLocation(GUI_POS_X, GUI_POS_Y); guiFrame.setVisible(true); // SwingUtilities.invokeLater( new Runnable() { // // @Override // public void run() { // snapper.snapFrames( main.frameConsoleWindow, guiFrame, JFrameSnapper.EAST ); // } // } ); System.out.println(" done!"); } else { // final String name = inputFolder.getName(); gui.exportHtmlOverview(); gui.exportDataFiles(); instance.saveParams(); System.exit(0); } }
From source file:com.liferay.nativity.control.win.WindowsNativityUtil.java
private static boolean _loadLibrary(boolean fullPath, String path) { _logger.trace("Trying to load {} {}", fullPath, path); try {// w ww.j a va 2s . c o m if (fullPath) { System.load(path); } else { System.loadLibrary(path); } _loaded = true; _logger.trace("Loaded library {}", path); } catch (UnsatisfiedLinkError e) { _logger.error("Library Path : {}", System.getProperty("java.library.path")); _logger.error("Failed to load {} {}", e.getMessage(), path); } catch (Exception e) { _logger.error("Failed to load {}", path); _logger.error(e.getMessage(), e); } return _loaded; }
From source file:com.serotonin.m2m2.Common.java
public static List<CommPortProxy> getCommPorts() throws CommPortConfigException { try {//from w w w . j a va 2 s .co m List<CommPortProxy> ports = new LinkedList<CommPortProxy>(); Enumeration<?> portEnum = CommPortIdentifier.getPortIdentifiers(); CommPortIdentifier cpid; while (portEnum.hasMoreElements()) { cpid = (CommPortIdentifier) portEnum.nextElement(); if (cpid.getPortType() == CommPortIdentifier.PORT_SERIAL) ports.add(new CommPortProxy(cpid)); } return ports; } catch (UnsatisfiedLinkError e) { throw new CommPortConfigException(e.getMessage()); } catch (NoClassDefFoundError e) { throw new CommPortConfigException( "Comm configuration error. Check that rxtx DLL or libraries have been correctly installed."); } }
From source file:com.liferay.nativity.control.win.WindowsNativityControlImpl.java
@Override public void setSystemFolder(String folder) { if (!WindowsNativityUtil.loaded()) { return;//from www . j a va2 s.c o m } try { WindowsNativityUtil.setSystemFolder(folder); } catch (UnsatisfiedLinkError ule) { _logger.error(ule.getMessage(), ule); } }
From source file:com.liferay.nativity.control.win.WindowsNativityControlImpl.java
@Override public void refreshFiles(String[] paths) { if ((paths == null) || (paths.length == 0)) { return;/*from ww w . jav a 2 s .c o m*/ } if (!WindowsNativityUtil.loaded()) { return; } try { for (String path : paths) { WindowsNativityUtil.updateExplorer(path); } } catch (UnsatisfiedLinkError ule) { _logger.error(ule.getMessage(), ule); } }
From source file:net.grinder.engine.agent.PropertyBuilder.java
protected StringBuilder addMemorySettings(StringBuilder jvmArguments) { String processCountStr = properties.getProperty("grinder.processes", "1"); // For compatibility, try both. int reservedMemoryUnit = properties.getInt("grinder.reserved.memory", 0); if (reservedMemoryUnit == 0) { reservedMemoryUnit = properties.getInt("grinder.memory.reserved", 300); }/* ww w .j av a 2 s .c o m*/ int reservedMemory = Math.max(reservedMemoryUnit, 0) * 1024 * 1024; int processCount = NumberUtils.toInt(processCountStr, 1); long desirableXmx; // make 500M as default. long permGen = 32 * 1024 * 1024; try { // Make a free memory room size of reservedMemory. long free = new Sigar().getMem().getActualFree() - reservedMemory; long perProcessTotalMemory = Math.max(free / processCount, MIN_PER_PROCESS_MEM_SIZE); desirableXmx = (long) (perProcessTotalMemory * 0.5); permGen = Math.min(Math.max((long) (perProcessTotalMemory * 0.2), 50L * 1024 * 1024), 128 * 1024 * 1024); if (this.useXmxLimit) { desirableXmx = Math.min(DEFAULT_MAX_XMX_SIZE, desirableXmx); } } catch (UnsatisfiedLinkError e) { LOGGER.error("Sigar lib link error: {}", e.getMessage()); desirableXmx = DEFAULT_XMX_SIZE; } catch (SigarException e) { LOGGER.error("Error occurred while calculating memory size : {}", e.getMessage()); desirableXmx = DEFAULT_XMX_SIZE; } jvmArguments.append(" -Xms").append(getMemorySize(desirableXmx)).append("m -Xmx") .append(getMemorySize(desirableXmx)).append("m "); jvmArguments.append(" -XX:PermSize=") .append(properties.getInt("grinder.memory.permsize", getMemorySize(permGen))).append("m "); jvmArguments.append(" -XX:MaxPermSize=") .append(properties.getInt("grinder.memory.maxpermsize", getMemorySize(permGen))).append("m "); return jvmArguments; }
From source file:henplus.HenPlus.java
/** * @param argv//from w w w. jav a2s . c o m * @throws UnsupportedEncodingException */ private void init(final String[] argv) throws UnsupportedEncodingException { String noReadlineMsg = null; try { Readline.load(ReadlineLibrary.GnuReadline); } catch (final UnsatisfiedLinkError ignoreMe) { noReadlineMsg = String.format("no readline found (%s). Using simple stdin.", ignoreMe.getMessage()); } _fromTerminal = Readline.hasTerminal(); _quiet |= !_fromTerminal; // not from terminal: always quiet. if (_fromTerminal) { setOutput(new TerminalOutputDevice(System.out), new TerminalOutputDevice(System.err)); } else { setOutput(new PrintStreamOutputDevice(System.out), new PrintStreamOutputDevice(System.err)); } initializeCommands(argv); readCommandLineOptions(argv); if (StringUtil.isEmpty(noReadlineMsg)) { Logger.info("using GNU readline (Brian Fox, Chet Ramey), Java wrapper by Bernhard Bablok"); } else { Logger.info(noReadlineMsg); } _historyConfig = createConfigurationContainer(HISTORY_NAME); Readline.initReadline("HenPlus"); _historyConfig.read(new ConfigurationContainer.ReadAction() { @Override public void readConfiguration(final InputStream in) throws Exception { HistoryWriter.readReadlineHistory(in); } }); Readline.setWordBreakCharacters(" ,/()<>=\t\n"); // TODO.. setDefaultPrompt(); }
From source file:com.sikulix.core.SX.java
static void loadNativeLibrary(String aLib) { try {/* w ww. ja v a2 s .c o m*/ if (aLib.startsWith("_ext_")) { error("loadNativeLibrary: loading external library not implemented: %s", aLib); } else { String sf_aLib = new File(getSXNATIVE(), aLib).getAbsolutePath(); System.load(sf_aLib); debug("loadNativeLibrary: bundled: %s", aLib); } } catch (UnsatisfiedLinkError ex) { terminate(1, "loadNativeLibrary: loading library error: %s (%s)", aLib, ex.getMessage()); } }