Example usage for java.net URI resolve

Introduction

In this page you can find the example usage for java.net URI resolve.

Prototype

public URI resolve(String str) 

Source Link

Document

Constructs a new URI by parsing the given string and then resolving it against this URI.

Usage

From source file:org.apache.taverna.scufl2.wfdesc.WfdescSerialiser.java

protected OntModel save(final WorkflowBundle bundle) {
    final OntModel model = ModelFactory.createOntologyModel();
    bundle.accept(new VisitorWithPath() {
        Scufl2Tools scufl2Tools = new Scufl2Tools();

        public boolean visit() {
            WorkflowBean node = getCurrentNode();
            // System.out.println(node);
            if (node instanceof WorkflowBundle) {
                return true;
            }/*ww w.  j a  v a  2  s . c o  m*/
            // @SuppressWarnings("rawtypes")

            if (node instanceof org.apache.taverna.scufl2.api.core.Workflow) {
                entityForBean(node, Wfdesc.Workflow);
            } else if (node instanceof Processor) {
                Processor processor = (Processor) node;
                Individual process = entityForBean(processor, Wfdesc.Process);
                Individual wf = entityForBean(processor.getParent(), Wfdesc.Workflow);
                wf.addProperty(Wfdesc.hasSubProcess, process);
            } else if (node instanceof InputPort) {
                WorkflowBean parent = ((Child) node).getParent();
                Individual input = entityForBean(node, Wfdesc.Input);
                Individual process = entityForBean(parent, Wfdesc.Process);
                process.addProperty(Wfdesc.hasInput, input);

            } else if (node instanceof OutputPort) {
                WorkflowBean parent = ((Child) node).getParent();
                Individual output = entityForBean(node, Wfdesc.Output);
                Individual process = entityForBean(parent, Wfdesc.Process);
                process.addProperty(Wfdesc.hasOutput, output);
            } else if (node instanceof DataLink) {
                WorkflowBean parent = ((Child) node).getParent();
                DataLink link = (DataLink) node;
                Individual dl = entityForBean(link, Wfdesc.DataLink);

                Individual source = entityForBean(link.getReceivesFrom(), Wfdesc.Output);
                dl.addProperty(Wfdesc.hasSource, source);

                Individual sink = entityForBean(link.getSendsTo(), Wfdesc.Input);
                dl.addProperty(Wfdesc.hasSink, sink);
                Individual wf = entityForBean(parent, Wfdesc.Workflow);
                wf.addProperty(Wfdesc.hasDataLink, dl);
            } else if (node instanceof Profile) {
                // So that we can get at the ProcessorBinding - buy only if
                // it is the main Profile
                return node == bundle.getMainProfile();
            } else if (node instanceof ProcessorBinding) {
                ProcessorBinding b = (ProcessorBinding) node;
                Activity a = b.getBoundActivity();
                Processor boundProcessor = b.getBoundProcessor();
                Individual process = entityForBean(boundProcessor, Wfdesc.Process);

                // Note: We don't describe the activity and processor
                // binding in wfdesc. Instead we
                // assign additional types and attributes to the parent
                // processor

                try {
                    URI type = a.getType();
                    Configuration c = scufl2Tools.configurationFor(a, b.getParent());
                    JsonNode json = c.getJson();
                    if (type.equals(BEANSHELL)) {
                        process.addRDFType(Wf4ever.BeanshellScript);
                        String s = json.get("script").asText();
                        process.addProperty(Wf4ever.script, s);
                        JsonNode localDep = json.get("localDependency");
                        if (localDep != null && localDep.isArray()) {
                            for (int i = 0; i < localDep.size(); i++) {
                                String depStr = localDep.get(i).asText();
                                // FIXME: Better class for dependency?
                                Individual dep = model.createIndividual(OWL.Thing);
                                dep.addLabel(depStr, null);
                                dep.addComment("JAR dependency", "en");
                                process.addProperty(Roterms.requiresSoftware, dep);
                                // Somehow this gets the whole thing to fall
                                // out of the graph!
                                // QName depQ = new
                                // QName("http://google.com/", ""+
                                // UUID.randomUUID());
                                // sesameManager.rename(dep, depQ);

                            }
                        }
                    }
                    if (type.equals(RSHELL)) {
                        process.addRDFType(Wf4ever.RScript);
                        String s = json.get("script").asText();
                        process.addProperty(Wf4ever.script, s);
                    }
                    if (type.equals(WSDL)) {
                        process.addRDFType(Wf4ever.SOAPService);
                        JsonNode operation = json.get("operation");
                        URI wsdl = URI.create(operation.get("wsdl").asText());
                        process.addProperty(Wf4ever.wsdlURI, wsdl.toASCIIString());
                        process.addProperty(Wf4ever.wsdlOperationName, operation.get("name").asText());
                        process.addProperty(Wf4ever.rootURI, wsdl.resolve("/").toASCIIString());
                    }
                    if (type.equals(REST)) {
                        process.addRDFType(Wf4ever.RESTService);
                        // System.out.println(json);
                        JsonNode request = json.get("request");
                        String absoluteURITemplate = request.get("absoluteURITemplate").asText();
                        String uriTemplate = absoluteURITemplate.replace("{", "");
                        uriTemplate = uriTemplate.replace("}", "");
                        // TODO: Detect {}
                        try {
                            URI root = new URI(uriTemplate).resolve("/");
                            process.addProperty(Wf4ever.rootURI, root.toASCIIString());
                        } catch (URISyntaxException e) {
                            logger.warning("Potentially invalid URI template: " + absoluteURITemplate);
                            // Uncomment to temporarily break
                            // TestInvalidURITemplate:
                            // rest.getWfRootURI().add(URI.create("http://example.com/FRED"));
                        }
                    }
                    if (type.equals(TOOL)) {
                        process.addRDFType(Wf4ever.CommandLineTool);
                        JsonNode desc = json.get("toolDescription");
                        // System.out.println(json);
                        JsonNode command = desc.get("command");
                        if (command != null) {
                            process.addProperty(Wf4ever.command, command.asText());
                        }
                    }
                    if (type.equals(NESTED_WORKFLOW)) {
                        Workflow nestedWf = scufl2Tools.nestedWorkflowForProcessor(boundProcessor,
                                b.getParent());
                        // The parent process is a specialization of the
                        // nested workflow
                        // (because the nested workflow could exist as
                        // several processors)
                        specializationOf(boundProcessor, nestedWf);
                        process.addRDFType(Wfdesc.Workflow);

                        // Just like the Processor specializes the nested
                        // workflow, the
                        // ProcessorPorts specialize the WorkflowPort
                        for (ProcessorPortBinding portBinding : b.getInputPortBindings()) {
                            // Map from activity port (not in wfdesc) to
                            // WorkflowPort
                            WorkflowPort wfPort = nestedWf.getInputPorts()
                                    .getByName(portBinding.getBoundActivityPort().getName());
                            if (wfPort == null) {
                                continue;
                            }
                            specializationOf(portBinding.getBoundProcessorPort(), wfPort);
                        }
                        for (ProcessorPortBinding portBinding : b.getOutputPortBindings()) {
                            WorkflowPort wfPort = nestedWf.getOutputPorts()
                                    .getByName(portBinding.getBoundActivityPort().getName());
                            if (wfPort == null) {
                                continue;
                            }
                            specializationOf(portBinding.getBoundProcessorPort(), wfPort);
                        }
                    }
                } catch (IndexOutOfBoundsException ex) {
                }
                return false;
            } else {
                // System.out.println("--NO!");
                return false;
            }
            for (Annotation ann : scufl2Tools.annotationsFor(node, bundle)) {
                String annotationBody = ann.getBody().toASCIIString();
                String baseURI = bundle.getGlobalBaseURI().resolve(ann.getBody()).toASCIIString();
                InputStream annotationStream;
                try {
                    annotationStream = bundle.getResources().getResourceAsInputStream(annotationBody);

                    try {
                        // FIXME: Don't just assume Lang.TURTLE
                        RDFDataMgr.read(model, annotationStream, baseURI, Lang.TURTLE);
                    } catch (RiotException e) {
                        logger.log(Level.WARNING, "Can't parse RDF Turtle from " + annotationBody, e);
                    } finally {
                        annotationStream.close();
                    }
                } catch (IOException e) {
                    logger.log(Level.WARNING, "Can't read " + annotationBody, e);
                }
            }
            if (node instanceof Named) {
                Named named = (Named) node;
                entityForBean(node, OWL.Thing).addLabel(named.getName(), null);
            }
            return true;
        }

        private void specializationOf(WorkflowBean special, WorkflowBean general) {
            Individual specialEnt = entityForBean(special, Prov_o.Entity);
            Individual generalEnt = entityForBean(general, Prov_o.Entity);
            specialEnt.addProperty(Prov_o.specializationOf, generalEnt);
        }

        private Individual entityForBean(WorkflowBean bean, Resource thing) {
            return model.createIndividual(uriForBean(bean), thing);
        }

        // @Override
        // public boolean visitEnter(WorkflowBean node) {
        // if (node instanceof Processor
        // || node instanceof org.apache.taverna.scufl2.api.core.Workflow
        // || node instanceof Port || node instanceof DataLink) {
        // visit(node);
        // return true;
        // }
        // // The other node types (e.g. dispatch stack, configuration) are
        // // not (directly) represented in wfdesc
        //// System.out.println("Skipping " + node);
        // return false;
        // };
    });
    return model;
}

---

From source file:org.kitodo.production.services.file.FileServiceTest.java

@Test
public void testCopyDirectory() throws IOException {
    URI fromDirectory = fileService.createDirectory(URI.create("fileServiceTest"), "copyDirectory");
    fileService.createResource(fromDirectory, "test.pdf");
    URI toDirectory = URI.create("fileServiceTest/copyDirectoryTo/");

    assertFalse(fileService.fileExist(toDirectory));

    fileService.copyDirectory(fromDirectory, toDirectory);

    assertTrue(fileService.fileExist(toDirectory));
    assertTrue(fileService.fileExist(toDirectory.resolve("test.pdf")));
    assertTrue(fileService.fileExist(fromDirectory));

}

---

From source file:org.kitodo.production.services.file.FileServiceTest.java

@Test
public void testCopyFileToDirectory() throws IOException {
    URI originFile = fileService.createResource(URI.create("fileServiceTest"), "copyFileToDirectory.txt");
    URI targetDirectory = fileService.createDirectory(URI.create("fileServiceTest"),
            "copyFileToDirectoryTarget");

    assertTrue(fileService.fileExist(originFile));
    assertTrue(fileService.fileExist(targetDirectory));
    assertFalse(fileService.fileExist(targetDirectory.resolve("copyFileToDirectory.txt")));

    fileService.copyFileToDirectory(originFile, targetDirectory);

    assertTrue(fileService.fileExist(originFile));
    assertTrue(fileService.fileExist(targetDirectory.resolve("copyFileToDirectory.txt")));

}

---

From source file:org.kitodo.production.services.file.FileServiceTest.java

@Test(expected = FileNotFoundException.class)
public void testCopyFileToDirectoryWithMissingSource() throws IOException {
    URI originFile = URI.create("fileServiceTest/copyFileToDirectoryMissingSource");
    URI targetDirectory = fileService.createDirectory(URI.create("fileServiceTest"),
            "copyFileToDirectoryMissingSourceTarget");

    assertFalse(fileService.fileExist(originFile));
    assertTrue(fileService.fileExist(targetDirectory));
    assertFalse(fileService.fileExist(targetDirectory.resolve("copyFileToDirectoryMissingSource")));

    fileService.copyFileToDirectory(originFile, targetDirectory);

}

---

From source file:tachyon.TachyonURI.java

/**
 * Resolve a child TachyonURI against a parent TachyonURI.
 *
 * @param parent the parent/*from   w  w  w . j  ava  2 s  .c o  m*/
 * @param child the child
 */
public TachyonURI(TachyonURI parent, TachyonURI child) {
    // Add a slash to parent's path so resolution is compatible with URI's
    URI parentUri = parent.mUri;
    String parentPath = parentUri.getPath();
    if (!parentPath.endsWith(SEPARATOR) && parentPath.length() > 0) {
        parentPath += SEPARATOR;
    }
    try {
        parentUri = new URI(parentUri.getScheme(), parentUri.getAuthority(), parentPath, null, null);
    } catch (URISyntaxException e) {
        throw new IllegalArgumentException(e);
    }
    URI resolved = parentUri.resolve(child.mUri);
    mUri = createURI(resolved.getScheme(), resolved.getAuthority(), resolved.getPath());
}

---

From source file:org.kitodo.services.file.FileServiceTest.java

@Test
public void testCopyDirectory() throws IOException {
    URI fromDirectory = fileService.createDirectory(URI.create("fileServiceTest"), "copyDirectory");
    fileService.createResource(fromDirectory, "test.pdf");
    URI toDirectory = URI.create("fileServiceTest/copyDirectoryTo/");

    Assert.assertFalse(fileService.fileExist(toDirectory));

    fileService.copyDirectory(fromDirectory, toDirectory);

    Assert.assertTrue(fileService.fileExist(toDirectory));
    Assert.assertTrue(fileService.fileExist(toDirectory.resolve("test.pdf")));
    Assert.assertTrue(fileService.fileExist(fromDirectory));

}

---

From source file:org.kitodo.services.file.FileServiceTest.java

@Test
public void testCopyFileToDirectory() throws IOException {
    URI originFile = fileService.createResource(URI.create("fileServiceTest"), "copyFileToDirectory.txt");
    URI targetDirectory = fileService.createDirectory(URI.create("fileServiceTest"),
            "copyFileToDirectoryTarget");

    Assert.assertTrue(fileService.fileExist(originFile));
    Assert.assertTrue(fileService.fileExist(targetDirectory));
    Assert.assertFalse(fileService.fileExist(targetDirectory.resolve("copyFileToDirectory.txt")));

    fileService.copyFileToDirectory(originFile, targetDirectory);

    Assert.assertTrue(fileService.fileExist(originFile));
    Assert.assertTrue(fileService.fileExist(targetDirectory.resolve("copyFileToDirectory.txt")));

}

---

From source file:com.netflix.genie.web.services.impl.JobDirectoryServerServiceImpl.java

private DefaultDirectoryWriter.Entry createEntry(final JobDirectoryManifest.ManifestEntry manifestEntry,
        final URI baseUri) {
    final DefaultDirectoryWriter.Entry entry = new DefaultDirectoryWriter.Entry();
    // For backwards compatibility the V3 names ended in "/" for directories
    if (manifestEntry.isDirectory()) {
        entry.setName(manifestEntry.getName().endsWith("/") ? manifestEntry.getName()
                : manifestEntry.getName() + "/");
    } else {//from  ww w .j a va2s .  c  o m
        entry.setName(manifestEntry.getName());
    }
    entry.setUrl(baseUri.resolve(manifestEntry.getPath()).toString());
    entry.setSize(manifestEntry.getSize());
    entry.setLastModified(manifestEntry.getLastModifiedTime());
    return entry;
}

---

From source file:org.kitodo.services.file.FileServiceTest.java

@Test(expected = FileNotFoundException.class)
public void testCopyFileToDirectoryWithMissingSource() throws IOException {
    URI originFile = URI.create("fileServiceTest/copyFileToDirectoryMissingSource");
    URI targetDirectory = fileService.createDirectory(URI.create("fileServiceTest"),
            "copyFileToDirectoryMissingSourceTarget");

    Assert.assertFalse(fileService.fileExist(originFile));
    Assert.assertTrue(fileService.fileExist(targetDirectory));
    Assert.assertFalse(fileService.fileExist(targetDirectory.resolve("copyFileToDirectoryMissingSource")));

    fileService.copyFileToDirectory(originFile, targetDirectory);

}

---

From source file:com.buaa.cfs.fs.Path.java

/** Resolve a child path against a parent path. */
public Path(Path parent, Path child) {
    // Add a slash to parent's path so resolution is compatible with URI's
    URI parentUri = parent.uri;
    String parentPath = parentUri.getPath();
    if (!(parentPath.equals("/") || parentPath.isEmpty())) {
        try {/*w w  w .j a  v a  2 s .co m*/
            parentUri = new URI(parentUri.getScheme(), parentUri.getAuthority(), parentUri.getPath() + "/",
                    null, parentUri.getFragment());
        } catch (URISyntaxException e) {
            throw new IllegalArgumentException(e);
        }
    }
    URI resolved = parentUri.resolve(child.uri);
    initialize(resolved.getScheme(), resolved.getAuthority(), resolved.getPath(), resolved.getFragment());
}

---

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