Example usage for javafx.scene Scene getStylesheets

List of usage examples for javafx.scene Scene getStylesheets

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Introduction

In this page you can find the example usage for javafx.scene Scene getStylesheets.

Prototype

public final ObservableList<String> getStylesheets()

Source Link

Document

Gets an observable list of string URLs linking to the stylesheets to use with this scene's contents.

Usage

From source file:snpviewer.SnpViewer.java

public void autoFindRegions() {
    if (affObserve.isEmpty()) {
        Dialogs.showErrorDialog(null,//from  ww  w  .ja  v a  2  s .  c o m
                "Find Regions can only be run when there "
                        + "is at least one Affected sample in the project.  Use the "
                        + "'Add Affected' button/menu item to add  Affected samples.",
                "No Affected samples to analyze!", "SnpViewer");
        return;
    }
    Stage stage = new Stage();
    FXMLLoader loader = new FXMLLoader(getClass().getResource("FindRegionsInterface.fxml"));
    try {
        Pane page = (Pane) loader.load();
        FindRegionsInterfaceController findReg = (FindRegionsInterfaceController) loader.getController();
        Scene scene = new Scene(page);
        stage.setScene(scene);
        scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm());
        setProgressMode(true);
        stage.initModality(Modality.APPLICATION_MODAL);
        stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png")));
        stage.showAndWait();
        if (findReg.getCancelled()) {
            setProgressMode(false);
            return;
        }

        //int w, double r, boolean con, int refWind, double refCut,
        //int minReportSize, int minReportRun, double het, double dischord)
        int window = Integer.parseInt(findReg.getWindow());
        double regionLength = Double.parseDouble(findReg.getRegionLength());
        boolean checkConcordant = findReg.getCheckConcordance();
        int refineWindow = Integer.parseInt(findReg.getRefineSize());
        double refineTolerance = Double.parseDouble(findReg.getRefineTolerance());
        int minReport = Integer.parseInt(findReg.getReportLength());
        int minReportRun = Integer.parseInt(findReg.getReportMinSnps());
        double hetTolerance = Double.parseDouble(findReg.getHetTolerance());
        double dischordTolerance = Double.parseDouble(findReg.getDischordTolerance());
        boolean autosomesOnly = findReg.getAutosomesOnly();
        LinkedHashSet<String> c = new LinkedHashSet();
        for (Object item : chromosomeSelector.getItems()) {
            if (item instanceof String) {
                String chrom = (String) item;
                if (autosomesOnly) {
                    if (chrom.matches("\\d+")) {//only add autosomes
                        c.add(chrom);
                    }
                } else {
                    c.add(chrom);
                }
            }
        }

        final RegionFinder regionFinder = new RegionFinder(c, affFiles, unFiles, window, regionLength,
                checkConcordant, refineWindow, refineTolerance, minReport, minReportRun, hetTolerance,
                dischordTolerance);

        regionFinder.setOnSucceeded(new EventHandler<WorkerStateEvent>() {
            @Override
            public void handle(WorkerStateEvent t) {
                progressBar.progressProperty().unbind();
                progressMessage.textProperty().unbind();
                progressMessage.setText("Done");
                progressTitle.textProperty().unbind();
                setProgressMode(false);
                Object result = t.getSource().getValue();
                ArrayList<RegionSummary> foundRegions = new ArrayList<>();
                if (result instanceof ArrayList) {
                    for (Object r : (ArrayList) result) {
                        if (r instanceof RegionSummary) {
                            RegionSummary reg = (RegionSummary) r;
                            foundRegions.add(reg);
                        }
                    }
                    if (foundRegions.size() > 0) {
                        FXMLLoader tableLoader = new FXMLLoader(
                                getClass().getResource("MultiRegionReporter.fxml"));
                        try {
                            Pane tablePane = (Pane) tableLoader.load();
                            MultiRegionReporterController multiReg = (MultiRegionReporterController) tableLoader
                                    .getController();
                            Scene tableScene = new Scene(tablePane);
                            Stage tableStage = new Stage();
                            tableStage.setScene(tableScene);
                            tableScene.getStylesheets().add(
                                    SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm());
                            multiReg.displayData(foundRegions);
                            tableStage.setTitle("Find Regions Results");
                            tableStage.getIcons()
                                    .add(new Image(this.getClass().getResourceAsStream("icon.png")));
                            tableStage.initModality(Modality.NONE);
                            tableStage.show();
                        } catch (Exception ex) {
                            Dialogs.showErrorDialog(null,
                                    "Error displaying" + " results from Find Regions Method.",
                                    "Find Regions Error!", "SnpViewer", ex);
                        }
                    } else {
                        Dialogs.showInformationDialog(null, "No regions " + "found.", "Find Regions",
                                "SnpViewer");
                    }
                    savedRegions.addAll(foundRegions);
                    RegionSummary sorter = new RegionSummary();
                    sorter.mergeRegionsByPosition(savedRegions);
                }
                saveProject();
                int c = chromosomeSelector.getSelectionModel().getSelectedIndex();
                if (c > -1) {
                    selectionOverlayPane.getChildren().clear();
                    selectionOverlayPane.getChildren().add(dragSelectRectangle);
                    drawSavedRegions((String) chromosomeBoxList[c]);
                }
                progressMessage.setText("");
                progressTitle.setText("");
                progressBar.progressProperty().set(0);
            }
        });
        regionFinder.setOnFailed(new EventHandler<WorkerStateEvent>() {
            @Override
            public void handle(WorkerStateEvent t) {
                progressBar.progressProperty().unbind();
                progressMessage.textProperty().unbind();
                progressMessage.setText("Failed!");
                progressTitle.textProperty().unbind();
                Dialogs.showErrorDialog(null, "Find Regions method failed.", "Error!", "SnpViewer",
                        t.getSource().getException());
                setProgressMode(false);
                progressMessage.setText("");
                progressTitle.setText("");
                progressBar.progressProperty().set(0);
            }
        });
        regionFinder.setOnCancelled(new EventHandler<WorkerStateEvent>() {
            @Override
            public void handle(WorkerStateEvent t) {
                progressBar.progressProperty().unbind();
                progressMessage.textProperty().unbind();
                progressMessage.setText("Cancelled");
                progressTitle.textProperty().unbind();
                Dialogs.showErrorDialog(null, "Find Regions method Cancelled.", "Cancelled", "SnpViewer");
                setProgressMode(false);
                progressMessage.setText("");
                progressTitle.setText("");
                progressBar.progressProperty().set(0);

            }
        });
        cancelButton.setOnAction(new EventHandler<ActionEvent>() {
            @Override
            public void handle(ActionEvent actionEvent) {
                regionFinder.cancel();

            }
        });
        progressBar.progressProperty().unbind();
        progressMessage.textProperty().unbind();
        progressTitle.textProperty().unbind();
        progressBar.progressProperty().bind(regionFinder.progressProperty());
        progressMessage.textProperty().bind(regionFinder.messageProperty());
        progressTitle.textProperty().bind(regionFinder.titleProperty());
        regionFinder.start();

    } catch (IOException ex) {
        Dialogs.showErrorDialog(null, "Error starting Find Regions method.", "Error!", "SnpViewer", ex);
        progressBar.progressProperty().unbind();
        progressMessage.textProperty().unbind();
        progressTitle.textProperty().unbind();
        setProgressMode(false);
    }

}

From source file:snpviewer.SnpViewer.java

private void zoomRegion(Rectangle rectangle) {
    try {/*from   ww  w  .j a v  a  2s . com*/
        FXMLLoader loader = new FXMLLoader(getClass().getResource("ZoomRegionView.fxml"));
        ChromosomeLength chromLength = new ChromosomeLength(genomeVersion);
        String currentChrom = (String) chromosomeBoxList[chromosomeSelector.getSelectionModel()
                .getSelectedIndex()];
        double startCoordinate = chromLength.getLength(currentChrom) / selectionOverlayPane.getWidth()
                * rectangle.getX();
        double selectionWidth = chromLength.getLength(currentChrom) / selectionOverlayPane.getWidth()
                * rectangle.getWidth();
        if (rectangle.getX() == 0) {
            startCoordinate = 1;
        }

        Pane page = (Pane) loader.load();
        Scene scene = new Scene(page);
        Stage stage = new Stage();
        stage.setScene(scene);
        stage.setTitle("chr" + currentChrom + ":" + nf.format(startCoordinate) + "-"
                + nf.format(startCoordinate + selectionWidth));
        scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm());
        String subPath = "zoom";
        stage.initModality(Modality.NONE);
        stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png")));
        stage.show();
        ZoomRegionViewController zoomController = (ZoomRegionViewController) loader.getController();
        ArrayList<SnpFile> bothFiles = new ArrayList<>();
        bothFiles.addAll(affFiles);
        bothFiles.addAll(unFiles);
        ArrayList<Pane> zoomPanes = zoomController.setPanes(bothFiles);
        zoomController.setParentController(this);
        zoomController.setLoadingRectangle(rectangle);
        zoomController.setRegionLength(selectionWidth);
        zoomController.setRegionStart(startCoordinate);
        zoomController.setChromosome(currentChrom);
        SplitPane zoomSplit = zoomController.getSplitPane();
        Iterator<SnpFile> sIter = bothFiles.iterator();
        Iterator<Pane> pIter = zoomPanes.iterator();
        if (!sIter.hasNext() || !pIter.hasNext()) {
            return;
        }
        SnpFile firstFile = sIter.next();
        Pane firstPane = pIter.next();
        drawCoordinatesWithIterator(firstFile, firstPane, subPath, sIter, pIter, 1, bothFiles.size(),
                currentChrom, startCoordinate, startCoordinate + selectionWidth, true, zoomSplit);
        zoomController.tidyPanes();

    } catch (ChromosomeLength.ChromosomeLengthException | IOException ex) {
        Dialogs.showErrorDialog(null, "Please see details for stack trace.", "Error displaying zoomed region",
                "SnpViewer", ex);
    }
}

From source file:snpviewer.SnpViewer.java

public void displayFlankingSnpIDs(final String chrom, final double start, final double end) {
    final Task<List<String>> displayTask = new Task<List<String>>() {
        @Override//from  w ww .  j  a v  a  2  s  . c o m
        protected List<String> call() {
            updateProgress(-1, -1);
            updateTitle("Finding flanking SNPs");
            updateMessage("Searching for nearest SNP in all files...");
            //work out coordinates based on chromosome and pane sizes
            /* read SnpFiles to find closest SNPs - use binary search
            * to find nearby SNP and refine to closest
            */
            List<SnpFile.SnpLine> startAndEndSnps = searchCoordinate(chrom, (int) start, (int) end);
            if (startAndEndSnps == null) {
                //DISPLAY ERROR HERE?
                return null;
            }
            String coordResult = "chr" + chrom + ":" + nf.format(startAndEndSnps.get(0).getPosition()) + "-"
                    + nf.format(startAndEndSnps.get(1).getPosition());
            String idResult = startAndEndSnps.get(0).getId() + ";" + startAndEndSnps.get(1).getId();
            List<String> result = new ArrayList();
            result.add(coordResult);
            result.add(idResult);
            return result;
        }
    };

    setProgressMode(true);
    progressBar.progressProperty().bind(displayTask.progressProperty());
    progressMessage.textProperty().unbind();
    progressMessage.textProperty().bind(displayTask.messageProperty());
    progressTitle.textProperty().unbind();
    progressTitle.textProperty().bind(displayTask.titleProperty());
    displayTask.setOnSucceeded(new EventHandler<WorkerStateEvent>() {
        @Override
        public void handle(WorkerStateEvent e) {
            setProgressMode(false);
            progressBar.progressProperty().unbind();
            progressBar.progressProperty().set(0);
            progressTitle.textProperty().unbind();
            progressMessage.textProperty().unbind();
            progressTitle.setText("");
            progressMessage.setText("");
        }

    });
    displayTask.setOnFailed(new EventHandler<WorkerStateEvent>() {
        @Override
        public void handle(WorkerStateEvent e) {
            setProgressMode(false);
            progressBar.progressProperty().unbind();
            progressBar.progressProperty().set(0);
            progressTitle.textProperty().unbind();
            progressMessage.textProperty().unbind();
            progressTitle.setText("");
            progressMessage.setText("");
            Dialogs.showErrorDialog(null, "Error displaying flanking SNPs\n", "Display error", "SNP Viewer",
                    displayTask.getException());

        }

    });
    displayTask.setOnCancelled(new EventHandler<WorkerStateEvent>() {
        @Override
        public void handle(WorkerStateEvent e) {
            progressMessage.setText("Display flanking SNPs cancelled");
            setProgressMode(false);
            progressBar.progressProperty().unbind();
            progressBar.progressProperty().set(0);
            progressTitle.textProperty().unbind();
            progressMessage.textProperty().unbind();
            progressTitle.setText("");
            progressMessage.setText("");
            Dialogs.showErrorDialog(null, "User cancelled display.", "Display error", "SNP Viewer",
                    displayTask.getException());
        }

    });
    cancelButton.setOnAction(new EventHandler<ActionEvent>() {
        @Override
        public void handle(ActionEvent actionEvent) {
            displayTask.cancel();

        }
    });
    new Thread(displayTask).start();
    try {
        List<String> result = displayTask.get();
        FXMLLoader loader = new FXMLLoader(getClass().getResource("RegionReporter.fxml"));
        Stage stage = new Stage();
        Pane page = (Pane) loader.load();
        Scene scene = new Scene(page);
        stage.setScene(scene);
        stage.setTitle("SNP Viewer Region Summary");
        stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png")));
        RegionReporterController regionReporter = loader.<RegionReporterController>getController();
        if (result == null) {
            regionReporter.setCoordinates("Error!");
            regionReporter.setIds("Error!");
        } else {
            regionReporter.setCoordinates(result.get(0));
            regionReporter.setIds(result.get(1));
        }
        scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm());
        stage.setResizable(false);
        stage.initModality(Modality.NONE);

        stage.show();
    } catch (InterruptedException | ExecutionException | IOException ex) {
        Dialogs.showErrorDialog(null,
                "Can't display flanking SNP IDs" + " - exception caught!\n\nPlease report this error.",
                "Error!", "SNP Viewer", ex);
    }

}

From source file:org.jevis.jeconfig.JEConfig.java

/**
 * Build an new JEConfig Login and main frame/stage
 *
 * @param primaryStage// w  ww.  jav  a2s .  co  m
 */
//AITBilal - Login  
private void initGUI(Stage primaryStage) {
    Scene scene;
    LoginGlass login = new LoginGlass(primaryStage);

    AnchorPane jeconfigRoot = new AnchorPane();
    AnchorPane.setTopAnchor(jeconfigRoot, 0.0);
    AnchorPane.setRightAnchor(jeconfigRoot, 0.0);
    AnchorPane.setLeftAnchor(jeconfigRoot, 0.0);
    AnchorPane.setBottomAnchor(jeconfigRoot, 0.0);
    //        jeconfigRoot.setStyle("-fx-background-color: white;");
    //        jeconfigRoot.getChildren().setAll(new Label("sodfhsdhdsofhdshdsfdshfjf"));

    Screen screen = Screen.getPrimary();
    Rectangle2D bounds = screen.getVisualBounds();

    // @AITBilal - Main frame elemente wird aufgerufen nachdem man sich eingeloggt hat.
    login.getLoginStatus().addListener(new ChangeListener<Boolean>() {

        @Override
        public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) {
            if (newValue) {
                System.out.println("after request");
                _mainDS = login.getDataSource();
                ds = _mainDS;

                Platform.runLater(new Runnable() {
                    @Override
                    public void run() {
                        FadeTransition ft = new FadeTransition(Duration.millis(1500), login);
                        ft.setFromValue(1.0);
                        ft.setToValue(0);
                        ft.setCycleCount(1);
                        ft.play();
                    }
                });

                JEConfig.PROGRAMM_INFO.setJEVisAPI(ds.getInfo());
                JEConfig.PROGRAMM_INFO.addLibrary(org.jevis.commons.application.Info.INFO);
                JEConfig.PROGRAMM_INFO.addLibrary(org.jevis.application.Info.INFO);

                preLodedClasses = login.getAllClasses();
                preLodedRootObjects = login.getRootObjects();

                PluginManager pMan = new PluginManager(ds);
                //@AITBilal - Toolbar fr save, newB, delete, sep1, form
                GlobalToolBar toolbar = new GlobalToolBar(pMan);
                pMan.addPluginsByUserSetting(null);

                //                    StackPane root = new StackPane();
                //                    root.setId("mainpane");
                BorderPane border = new BorderPane();
                VBox vbox = new VBox();
                vbox.getChildren().addAll(new TopMenu(), toolbar.ToolBarFactory());
                border.setTop(vbox);
                //@AITBilal - Alle Plugins Inhalt fr JEConfig (Resources... | System | Attribute)
                border.setCenter(pMan.getView());

                Statusbar statusBar = new Statusbar(ds);

                border.setBottom(statusBar);

                System.out.println("show welcome");

                //Disable GUI is StatusBar note an disconnect
                border.disableProperty().bind(statusBar.connectedProperty.not());

                Platform.runLater(new Runnable() {
                    @Override
                    public void run() {
                        AnchorPane.setTopAnchor(border, 0.0);
                        AnchorPane.setRightAnchor(border, 0.0);
                        AnchorPane.setLeftAnchor(border, 0.0);
                        AnchorPane.setBottomAnchor(border, 0.0);

                        jeconfigRoot.getChildren().setAll(border);
                        //                            try {
                        //            WelcomePage welcome = new WelcomePage(primaryStage, new URI("http://coffee-project.eu/"));
                        //            WelcomePage welcome = new WelcomePage(primaryStage, new URI("http://openjevis.org/projects/openjevis/wiki/JEConfig3#JEConfig-Version-3"));

                        //                            Task<Void> showWelcome = new Task<Void>() {
                        //                                @Override
                        //                                protected Void call() throws Exception {
                        try {
                            WelcomePage welcome = new WelcomePage(primaryStage, _config.getWelcomeURL());
                        } catch (URISyntaxException ex) {
                            Logger.getLogger(JEConfig.class.getName()).log(Level.SEVERE, null, ex);
                        } catch (MalformedURLException ex) {
                            Logger.getLogger(JEConfig.class.getName()).log(Level.SEVERE, null, ex);
                        }
                        //                                    return null;
                        //                                }
                        //                            };
                        //                            new Thread(showWelcome).start();

                        //                                WelcomePage welcome = new WelcomePage(primaryStage, _config.getWelcomeURL());
                        //                            } catch (URISyntaxException ex) {
                        //                                Logger.getLogger(JEConfig.class.getName()).log(Level.SEVERE, null, ex);
                        //                            } catch (MalformedURLException ex) {
                        //                                Logger.getLogger(JEConfig.class.getName()).log(Level.SEVERE, null, ex);
                        //                            }
                    }
                });
            }

        }
    });

    AnchorPane.setTopAnchor(login, 0.0);
    AnchorPane.setRightAnchor(login, 0.0);
    AnchorPane.setLeftAnchor(login, 0.0);
    AnchorPane.setBottomAnchor(login, 0.0);
    //@AITBilal - Login Dialog
    scene = new Scene(jeconfigRoot, bounds.getWidth(), bounds.getHeight());
    scene.getStylesheets().add("/styles/Styles.css");
    primaryStage.getIcons().add(getImage("1393354629_Config-Tools.png"));
    primaryStage.setTitle("JEConfig");
    primaryStage.setScene(scene);
    maximize(primaryStage);
    primaryStage.show();

    //        Platform.runLater(new Runnable() {
    //            @Override
    //            public void run() {
    //@AITBilal - Inhalt bzw. die Elemente von LoginDialog
    jeconfigRoot.getChildren().setAll(login);
    //            }
    //        });

    primaryStage.onCloseRequestProperty().addListener(new ChangeListener<EventHandler<WindowEvent>>() {

        @Override
        public void changed(ObservableValue<? extends EventHandler<WindowEvent>> ov,
                EventHandler<WindowEvent> t, EventHandler<WindowEvent> t1) {
            try {
                System.out.println("Disconnect");
                ds.disconnect();
            } catch (JEVisException ex) {
                Logger.getLogger(JEConfig.class.getName()).log(Level.SEVERE, null, ex);
            }
        }
    });
}

From source file:fr.amap.lidar.amapvox.gui.MainFrameController.java

private void resetComponents() throws Exception {

    Platform.runLater(new Runnable() {

        @Override/*from   w w  w  .  j  a v a 2  s.  c  o m*/
        public void run() {
            try {
                FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/MainFrame.fxml"));
                Parent root = loader.load();

                Scene scene = new Scene(root);

                scene.getStylesheets().add("/styles/Styles.css");

                //stage.setTitle("AMAPVox");
                stage = new Stage();
                stage.setTitle("AMAPVox");
                stage.setScene(scene);
            } catch (IOException ex) {
                java.util.logging.Logger.getLogger(MainFrameController.class.getName()).log(Level.SEVERE, null,
                        ex);
            }

        }
    });
    /*
     textFieldInputFileALS.setText("");
     textFieldTrajectoryFileALS.setText("");
     textFieldOutputFileALS.setText("");
     textFieldOutputFileGroundEnergy.setText("");
     textfieldDTMPath.setText("");
     textFieldInputFileTLS.setText("");
     textFieldOutputPathTLS.setText("");
     textFieldMergedFileName.setText("merged.vox");
     */
}