Example usage for javafx.stage Modality NONE

Introduction

In this page you can find the example usage for javafx.stage Modality NONE.

Prototype

Modality NONE

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Document

Defines a top-level window that is not modal and does not block any other window.

Usage

From source file:snpviewer.SnpViewer.java

public void autoFindRegions() {
    if (affObserve.isEmpty()) {
        Dialogs.showErrorDialog(null,/*ww w .ja va  2s. co m*/
                "Find Regions can only be run when there "
                        + "is at least one Affected sample in the project.  Use the "
                        + "'Add Affected' button/menu item to add  Affected samples.",
                "No Affected samples to analyze!", "SnpViewer");
        return;
    }
    Stage stage = new Stage();
    FXMLLoader loader = new FXMLLoader(getClass().getResource("FindRegionsInterface.fxml"));
    try {
        Pane page = (Pane) loader.load();
        FindRegionsInterfaceController findReg = (FindRegionsInterfaceController) loader.getController();
        Scene scene = new Scene(page);
        stage.setScene(scene);
        scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm());
        setProgressMode(true);
        stage.initModality(Modality.APPLICATION_MODAL);
        stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png")));
        stage.showAndWait();
        if (findReg.getCancelled()) {
            setProgressMode(false);
            return;
        }

        //int w, double r, boolean con, int refWind, double refCut,
        //int minReportSize, int minReportRun, double het, double dischord)
        int window = Integer.parseInt(findReg.getWindow());
        double regionLength = Double.parseDouble(findReg.getRegionLength());
        boolean checkConcordant = findReg.getCheckConcordance();
        int refineWindow = Integer.parseInt(findReg.getRefineSize());
        double refineTolerance = Double.parseDouble(findReg.getRefineTolerance());
        int minReport = Integer.parseInt(findReg.getReportLength());
        int minReportRun = Integer.parseInt(findReg.getReportMinSnps());
        double hetTolerance = Double.parseDouble(findReg.getHetTolerance());
        double dischordTolerance = Double.parseDouble(findReg.getDischordTolerance());
        boolean autosomesOnly = findReg.getAutosomesOnly();
        LinkedHashSet<String> c = new LinkedHashSet();
        for (Object item : chromosomeSelector.getItems()) {
            if (item instanceof String) {
                String chrom = (String) item;
                if (autosomesOnly) {
                    if (chrom.matches("\\d+")) {//only add autosomes
                        c.add(chrom);
                    }
                } else {
                    c.add(chrom);
                }
            }
        }

        final RegionFinder regionFinder = new RegionFinder(c, affFiles, unFiles, window, regionLength,
                checkConcordant, refineWindow, refineTolerance, minReport, minReportRun, hetTolerance,
                dischordTolerance);

        regionFinder.setOnSucceeded(new EventHandler<WorkerStateEvent>() {
            @Override
            public void handle(WorkerStateEvent t) {
                progressBar.progressProperty().unbind();
                progressMessage.textProperty().unbind();
                progressMessage.setText("Done");
                progressTitle.textProperty().unbind();
                setProgressMode(false);
                Object result = t.getSource().getValue();
                ArrayList<RegionSummary> foundRegions = new ArrayList<>();
                if (result instanceof ArrayList) {
                    for (Object r : (ArrayList) result) {
                        if (r instanceof RegionSummary) {
                            RegionSummary reg = (RegionSummary) r;
                            foundRegions.add(reg);
                        }
                    }
                    if (foundRegions.size() > 0) {
                        FXMLLoader tableLoader = new FXMLLoader(
                                getClass().getResource("MultiRegionReporter.fxml"));
                        try {
                            Pane tablePane = (Pane) tableLoader.load();
                            MultiRegionReporterController multiReg = (MultiRegionReporterController) tableLoader
                                    .getController();
                            Scene tableScene = new Scene(tablePane);
                            Stage tableStage = new Stage();
                            tableStage.setScene(tableScene);
                            tableScene.getStylesheets().add(
                                    SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm());
                            multiReg.displayData(foundRegions);
                            tableStage.setTitle("Find Regions Results");
                            tableStage.getIcons()
                                    .add(new Image(this.getClass().getResourceAsStream("icon.png")));
                            tableStage.initModality(Modality.NONE);
                            tableStage.show();
                        } catch (Exception ex) {
                            Dialogs.showErrorDialog(null,
                                    "Error displaying" + " results from Find Regions Method.",
                                    "Find Regions Error!", "SnpViewer", ex);
                        }
                    } else {
                        Dialogs.showInformationDialog(null, "No regions " + "found.", "Find Regions",
                                "SnpViewer");
                    }
                    savedRegions.addAll(foundRegions);
                    RegionSummary sorter = new RegionSummary();
                    sorter.mergeRegionsByPosition(savedRegions);
                }
                saveProject();
                int c = chromosomeSelector.getSelectionModel().getSelectedIndex();
                if (c > -1) {
                    selectionOverlayPane.getChildren().clear();
                    selectionOverlayPane.getChildren().add(dragSelectRectangle);
                    drawSavedRegions((String) chromosomeBoxList[c]);
                }
                progressMessage.setText("");
                progressTitle.setText("");
                progressBar.progressProperty().set(0);
            }
        });
        regionFinder.setOnFailed(new EventHandler<WorkerStateEvent>() {
            @Override
            public void handle(WorkerStateEvent t) {
                progressBar.progressProperty().unbind();
                progressMessage.textProperty().unbind();
                progressMessage.setText("Failed!");
                progressTitle.textProperty().unbind();
                Dialogs.showErrorDialog(null, "Find Regions method failed.", "Error!", "SnpViewer",
                        t.getSource().getException());
                setProgressMode(false);
                progressMessage.setText("");
                progressTitle.setText("");
                progressBar.progressProperty().set(0);
            }
        });
        regionFinder.setOnCancelled(new EventHandler<WorkerStateEvent>() {
            @Override
            public void handle(WorkerStateEvent t) {
                progressBar.progressProperty().unbind();
                progressMessage.textProperty().unbind();
                progressMessage.setText("Cancelled");
                progressTitle.textProperty().unbind();
                Dialogs.showErrorDialog(null, "Find Regions method Cancelled.", "Cancelled", "SnpViewer");
                setProgressMode(false);
                progressMessage.setText("");
                progressTitle.setText("");
                progressBar.progressProperty().set(0);

            }
        });
        cancelButton.setOnAction(new EventHandler<ActionEvent>() {
            @Override
            public void handle(ActionEvent actionEvent) {
                regionFinder.cancel();

            }
        });
        progressBar.progressProperty().unbind();
        progressMessage.textProperty().unbind();
        progressTitle.textProperty().unbind();
        progressBar.progressProperty().bind(regionFinder.progressProperty());
        progressMessage.textProperty().bind(regionFinder.messageProperty());
        progressTitle.textProperty().bind(regionFinder.titleProperty());
        regionFinder.start();

    } catch (IOException ex) {
        Dialogs.showErrorDialog(null, "Error starting Find Regions method.", "Error!", "SnpViewer", ex);
        progressBar.progressProperty().unbind();
        progressMessage.textProperty().unbind();
        progressTitle.textProperty().unbind();
        setProgressMode(false);
    }

}

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