Example usage for javax.json JsonStructure getValueType

Introduction

In this page you can find the example usage for javax.json JsonStructure getValueType.

Prototype

ValueType getValueType();

Source Link

Document

Returns the value type of this JSON value.

Usage

From source file:edu.harvard.hms.dbmi.bd2k.irct.ri.exac.EXACResourceImplementation.java

@Override
public Result runQuery(SecureSession session, Query qep, Result result) throws ResourceInterfaceException {
    // TODO Auto-generated method stub
    HttpClient client = createClient(session);
    result.setResultStatus(ResultStatus.CREATED);

    // Check Clause
    if (qep.getClauses().size() != 1) {
        result.setResultStatus(ResultStatus.ERROR);
        result.setMessage("Wrong number of clauses");
        return result;
    }//  ww  w  . j a  v  a  2s  . c o m
    ClauseAbstract clause = qep.getClauses().values().iterator().next();

    if (!(clause instanceof WhereClause)) {
        result.setResultStatus(ResultStatus.ERROR);
        result.setMessage("Clause is not a where Clause");
        return result;
    }

    WhereClause whereClause = (WhereClause) clause;
    // Create Query
    String urlString = null;

    // BY ENSEMBL
    if (whereClause.getPredicateType().getName().equals("ENSEMBL")) {
        urlString = resourceURL + "/rest" + getResourcePathFromPUI(whereClause.getField().getPui()) + "/"
                + whereClause.getStringValues().get("ENSEMBLID");

    } else if (whereClause.getPredicateType().getName().equals("QUERY")) {
        // BY QUERY
        String[] resourcePath = getResourcePathFromPUI(whereClause.getField().getPui()).split("/");
        String service = "";
        if (resourcePath.length >= 3) {
            service = "&service=" + resourcePath[2];
        }

        urlString = resourceURL + "/rest/awesome?query=" + whereClause.getStringValues().get("QUERY") + service;
    } else if (whereClause.getPredicateType().getName().equals("REGION")) {
        // BY REGION
        urlString = resourceURL + "/rest" + getResourcePathFromPUI(whereClause.getField().getPui()) + "/"
                + whereClause.getStringValues().get("CHROMOSOME") + "-"
                + whereClause.getStringValues().get("START");
        if (whereClause.getStringValues().containsKey("STOP")) {
            urlString += "-" + whereClause.getStringValues().get("STOP");
        }

    } else if (whereClause.getPredicateType().getName().equals("VARIANT")) {
        // BY VARIANT
        urlString = resourceURL + "/rest" + getResourcePathFromPUI(whereClause.getField().getPui()) + "/"
                + whereClause.getStringValues().get("CHROMOSOME") + "-"
                + whereClause.getStringValues().get("POSITION") + "-"
                + whereClause.getStringValues().get("REFERENCE") + "-"
                + whereClause.getStringValues().get("VARIANT");
    }
    // Run Query
    if (urlString == null) {
        result.setResultStatus(ResultStatus.ERROR);
        result.setMessage("Unknown predicate");
        return result;
    }

    HttpGet get = new HttpGet(urlString);
    try {
        HttpResponse response = client.execute(get);
        JsonReader reader = Json.createReader(response.getEntity().getContent());
        JsonStructure results = reader.read();
        if (results.getValueType().equals(ValueType.ARRAY)) {
            result = convertJsonArrayToResultSet((JsonArray) results, result);
        } else {
            result = convertJsonObjectToResultSet((JsonObject) results, result);
        }
        reader.close();
        result.setResultStatus(ResultStatus.COMPLETE);
    } catch (IOException e) {
        result.setResultStatus(ResultStatus.ERROR);
        result.setMessage(e.getMessage());
    }

    // Format Results

    return result;
}

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