Example usage for javax.swing.text.html StyleSheet addRule

List of usage examples for javax.swing.text.html StyleSheet addRule

Introduction

In this page you can find the example usage for javax.swing.text.html StyleSheet addRule.

Prototype

public void addRule(String rule) 

Source Link

Document

Adds a set of rules to the sheet.

Usage

From source file:Main.java

public JComponent makeEditorPane(String bullet) {
    JEditorPane pane = new JEditorPane();
    pane.setContentType("text/html");
    pane.setEditable(false);/*from   w w w .  ja v a 2  s .c om*/
    if (bullet != null) {
        HTMLEditorKit htmlEditorKit = (HTMLEditorKit) pane.getEditorKit();
        StyleSheet styleSheet = htmlEditorKit.getStyleSheet();
        String u = "http://i.stack.imgur.com/jV29K.png";
        styleSheet.addRule(String.format("ul{list-style-image:url(%s);margin:0px 20px;", u));
        // styleSheet.addRule("ul{list-style-type:disc;margin:0px 20px;}");

    }
    pane.setText("<html><h1>Heading</h1>Text<ul><li>Bullet point</li></ul></html>");
    return pane;
}

From source file:groovesquid.GetAdsThread.java

@Override
public void run() {
    AdsResponse adsResponse = gson.fromJson(getFile(getAdsUrl), AdsResponse.class);
    ads = adsResponse.getAds();/*from   w w w.j av a  2  s. c  om*/
    if (ads.size() > 0) {
        Random randomGenerator = new Random();
        int index = randomGenerator.nextInt(ads.size());

        AdsResponse.Ad ad = ads.get(index);

        HTMLEditorKit kit = new HTMLEditorKit();
        adPane.setEditorKit(kit);

        StyleSheet styleSheet = kit.getStyleSheet();
        styleSheet.addRule("body { width: 160px; margin: 0; padding: 10px 0 0 0; }");
        //styleSheet.addRule("div { width: 160px; height:600px; position:absolute; top:50%; margin-top:-300px; }");
        String result = "<html><body><div><a href=\"" + ad.getUrl() + "\"><img src=\"" + ad.getImage()
                + "\" alt=\"" + ad.getTitle() + "\" border=\"0\"/></a></div></body></html>";
        Document doc = kit.createDefaultDocument();
        adPane.setDocument(doc);
        adPane.setText(result);

        System.out.println(result);
    }

}

From source file:com.mirth.connect.client.ui.ExportChannelLibrariesDialog.java

private void initComponents(Channel channel) {
    label1 = new JLabel("   The following code template libraries are linked to this channel:");
    label1.setIcon(UIManager.getIcon("OptionPane.questionIcon"));

    librariesTextPane = new JTextPane();
    librariesTextPane.setContentType("text/html");
    HTMLEditorKit editorKit = new HTMLEditorKit();
    StyleSheet styleSheet = editorKit.getStyleSheet();
    styleSheet.addRule(".export-channel-libraries-dialog {font-family:\"Tahoma\";font-size:11;text-align:top}");
    librariesTextPane.setEditorKit(editorKit);
    librariesTextPane.setEditable(false);
    librariesTextPane.setBackground(getBackground());
    librariesTextPane.setBorder(null);// w  ww  . j a va 2  s  . c o m

    StringBuilder librariesText = new StringBuilder("<html><ul class=\"export-channel-libraries-dialog\">");
    for (CodeTemplateLibrary library : PlatformUI.MIRTH_FRAME.codeTemplatePanel.getCachedCodeTemplateLibraries()
            .values()) {
        if (library.getEnabledChannelIds().contains(channel.getId()) || (library.isIncludeNewChannels()
                && !library.getDisabledChannelIds().contains(channel.getId()))) {
            librariesText.append("<li>").append(StringEscapeUtils.escapeHtml4(library.getName()))
                    .append("</li>");
        }
    }
    librariesText.append("</ul></html>");
    librariesTextPane.setText(librariesText.toString());
    librariesTextPane.setCaretPosition(0);

    librariesScrollPane = new JScrollPane(librariesTextPane);

    label2 = new JLabel("Do you wish to include these libraries in the channel export?");

    alwaysChooseCheckBox = new JCheckBox(
            "Always choose this option by default in the future (may be changed in the Administrator settings)");

    yesButton = new JButton("Yes");
    yesButton.setMnemonic('Y');
    yesButton.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            result = JOptionPane.YES_OPTION;
            if (alwaysChooseCheckBox.isSelected()) {
                Preferences.userNodeForPackage(Mirth.class).putBoolean("exportChannelCodeTemplateLibraries",
                        true);
            }
            dispose();
        }
    });

    noButton = new JButton("No");
    noButton.setMnemonic('N');
    noButton.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            result = JOptionPane.NO_OPTION;
            if (alwaysChooseCheckBox.isSelected()) {
                Preferences.userNodeForPackage(Mirth.class).putBoolean("exportChannelCodeTemplateLibraries",
                        false);
            }
            dispose();
        }
    });

    cancelButton = new JButton("Cancel");
    cancelButton.setMnemonic('C');
    cancelButton.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            result = JOptionPane.CANCEL_OPTION;
            dispose();
        }
    });
}

From source file:com.mirth.connect.client.ui.dependencies.ChannelDependenciesWarningDialog.java

private void initComponents(final ChannelTask task, Set<ChannelDependency> dependencies,
        final Set<String> selectedChannelIds, Set<String> additionalChannelIds)
        throws ChannelDependencyException {
    additionalChannelIds.removeAll(selectedChannelIds);
    final OrderedChannels orderedChannels = ChannelDependencyUtil.getOrderedChannels(dependencies,
            new HashSet<String>(CollectionUtils.union(selectedChannelIds, additionalChannelIds)));
    final List<Set<String>> orderedChannelIds = orderedChannels.getOrderedIds();
    if (task.isForwardOrder()) {
        Collections.reverse(orderedChannelIds);
    }// w  w  w.ja v  a2 s .  c o  m

    descriptionLabel = new JLabel(
            "<html>There are additional channels in the dependency chain.<br/><b>Bolded</b> channels will be "
                    + task.getFuturePassive() + " in the following order:</html>");

    channelsPane = new JTextPane();
    channelsPane.setContentType("text/html");
    HTMLEditorKit editorKit = new HTMLEditorKit();
    StyleSheet styleSheet = editorKit.getStyleSheet();
    styleSheet.addRule("div {font-family:\"Tahoma\";font-size:11;text-align:top}");
    channelsPane.setEditorKit(editorKit);
    channelsPane.setEditable(false);
    channelsPane.setBackground(getBackground());

    setTextPane(task, orderedChannels, orderedChannelIds, selectedChannelIds, false);

    descriptionScrollPane = new JScrollPane(channelsPane);

    includeCheckBox = new JCheckBox(WordUtils.capitalize(task.toString()) + " " + additionalChannelIds.size()
            + " additional channel" + (additionalChannelIds.size() == 1 ? "" : "s"));
    includeCheckBox.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            setTextPane(task, orderedChannels, orderedChannelIds, selectedChannelIds,
                    includeCheckBox.isSelected());
        }
    });

    okButton = new JButton("OK");
    okButton.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            result = JOptionPane.OK_OPTION;
            dispose();
        }
    });

    cancelButton = new JButton("Cancel");
    cancelButton.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            result = JOptionPane.CANCEL_OPTION;
            dispose();
        }
    });
}

From source file:net.sf.taverna.t2.workbench.ui.credentialmanager.WarnUserAboutJCEPolicyDialog.java

private void initComponents() {
    // Base font for all components on the form
    Font baseFont = new JLabel("base font").getFont().deriveFont(11f);

    // Message saying that updates are available
    JPanel messagePanel = new JPanel(new BorderLayout());
    messagePanel.setBorder(new CompoundBorder(new EmptyBorder(10, 10, 10, 10), new EtchedBorder(LOWERED)));

    JEditorPane message = new JEditorPane();
    message.setEditable(false);// www.j a  v a2  s. c  o  m
    message.setBackground(this.getBackground());
    message.setFocusable(false);
    HTMLEditorKit kit = new HTMLEditorKit();
    message.setEditorKit(kit);
    StyleSheet styleSheet = kit.getStyleSheet();
    //styleSheet.addRule("body {font-family:"+baseFont.getFamily()+"; font-size:"+baseFont.getSize()+";}"); // base font looks bigger when rendered as HTML
    styleSheet.addRule("body {font-family:" + baseFont.getFamily() + "; font-size:10px;}");
    Document doc = kit.createDefaultDocument();
    message.setDocument(doc);
    message.setText(
            "<html><body>In order for Taverna's security features to function properly - you need to install<br>"
                    + "'Java Cryptography Extension (JCE) Unlimited Strength Jurisdiction Policy'. <br><br>"
                    + "If you do not already have it, for <b>Java 6</b> you can get it from:<br>"
                    + "<a href=\"http://www.oracle.com/technetwork/java/javase/downloads/index.html\">http://www.oracle.com/technetwork/java/javase/downloads/index.html</a><br<br>"
                    + "Installation instructions are contained in the bundle you download." + "</body><html>");
    message.addHyperlinkListener(new HyperlinkListener() {
        @Override
        public void hyperlinkUpdate(HyperlinkEvent he) {
            HyperlinkEvent.EventType type = he.getEventType();
            if (type == ACTIVATED)
                // Open a Web browser
                try {
                    getDesktop().browse(he.getURL().toURI());
                    //                  BrowserLauncher launcher = new BrowserLauncher();
                    //                  launcher.openURLinBrowser(he.getURL().toString());
                } catch (Exception ex) {
                    logger.error("Failed to launch browser to fetch JCE " + he.getURL());
                }
        }
    });
    message.setBorder(new EmptyBorder(5, 5, 5, 5));
    messagePanel.add(message, CENTER);

    doNotWarnMeAgainCheckBox = new JCheckBox("Do not warn me again");
    doNotWarnMeAgainCheckBox.setFont(baseFont.deriveFont(12f));
    messagePanel.add(doNotWarnMeAgainCheckBox, SOUTH);

    // Buttons
    JPanel buttonsPanel = new JPanel(new FlowLayout(FlowLayout.CENTER));
    JButton okButton = new JButton("OK");
    okButton.setFont(baseFont);
    okButton.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            okPressed();
        }
    });

    buttonsPanel.add(okButton);

    getContentPane().setLayout(new BorderLayout());
    getContentPane().add(messagePanel, CENTER);
    getContentPane().add(buttonsPanel, SOUTH);

    pack();
    setResizable(false);
    // Center the dialog on the screen (we do not have the parent)
    Dimension dimension = getToolkit().getScreenSize();
    Rectangle abounds = getBounds();
    setLocation((dimension.width - abounds.width) / 2, (dimension.height - abounds.height) / 2);
    setSize(getPreferredSize());
}

From source file:net.sf.jabref.gui.mergeentries.MergeEntries.java

private JTextPane getStyledTextPane() {
    JTextPane pane = new JTextPane();
    pane.setContentType(CONTENT_TYPE);//  ww w .ja  v  a  2 s.  co  m
    StyleSheet sheet = ((HTMLEditorKit) pane.getEditorKit()).getStyleSheet();
    sheet.addRule(BODY_STYLE);
    sheet.addRule(ADDITION_STYLE);
    sheet.addRule(REMOVAL_STYLE);
    sheet.addRule(CHANGE_STYLE);
    pane.setEditable(false);
    return pane;
}

From source file:net.pms.newgui.LanguageSelection.java

private JComponent buildComponent() {
    // UIManager manages to get the background color wrong for text
    // components on OS X, so we apply the color manually
    Color backgroundColor = UIManager.getColor("Panel.background");
    rootPanel.setLayout(new BoxLayout(rootPanel, BoxLayout.PAGE_AXIS));

    // It needs to be something in the title text, or the size calculation for the border will be wrong.
    selectionPanelBorder.setTitle(" ");
    selectionPanel.setBorder(BorderFactory.createCompoundBorder(BorderFactory.createEmptyBorder(5, 5, 5, 5),
            BorderFactory.createCompoundBorder(selectionPanelBorder,
                    BorderFactory.createEmptyBorder(10, 5, 10, 5))));
    selectionPanel.setLayout(new BoxLayout(selectionPanel, BoxLayout.PAGE_AXIS));
    descriptionText.setEditable(false);//  w  ww . ja v  a  2 s .c o  m
    descriptionText.setBackground(backgroundColor);
    descriptionText.setFocusable(false);
    descriptionText.setLineWrap(true);
    descriptionText.setWrapStyleWord(true);
    descriptionText.setBorder(BorderFactory.createEmptyBorder(5, 15, 10, 15));
    selectionPanel.add(descriptionText);

    jLanguage = new JComboBox<>(keyedModel);
    jLanguage.setEditable(false);
    jLanguage.setPreferredSize(new Dimension(50, jLanguage.getPreferredSize().height));
    jLanguage.addActionListener(new LanguageComboBoxActionListener());
    languagePanel.setLayout(new BoxLayout(languagePanel, BoxLayout.PAGE_AXIS));
    languagePanel.setBorder(BorderFactory.createEmptyBorder(5, 15, 5, 15));
    languagePanel.add(jLanguage);
    selectionPanel.add(languagePanel);

    warningText.setEditable(false);
    warningText.setFocusable(false);
    warningText.setBackground(backgroundColor);
    warningText.setFont(warningText.getFont().deriveFont(Font.BOLD));
    warningText.setLineWrap(true);
    warningText.setWrapStyleWord(true);
    warningText.setBorder(BorderFactory.createEmptyBorder(5, 15, 0, 15));
    selectionPanel.add(warningText);

    // It needs to be something in the title text, or the size calculation for the border will be wrong.
    infoTextBorder.setTitle(" ");
    infoText.setBorder(
            BorderFactory.createCompoundBorder(BorderFactory.createEmptyBorder(5, 5, 5, 5), BorderFactory
                    .createCompoundBorder(infoTextBorder, BorderFactory.createEmptyBorder(15, 20, 20, 20))));
    infoText.setEditable(false);
    infoText.setFocusable(false);
    infoText.setBackground(backgroundColor);
    infoText.putClientProperty(JEditorPane.HONOR_DISPLAY_PROPERTIES, Boolean.TRUE);

    // This exercise is to avoid using the default shared StyleSheet with padding
    CustomHTMLEditorKit editorKit = new CustomHTMLEditorKit();
    StyleSheet styleSheet = new StyleSheet();
    styleSheet.addRule("a { color: #0000EE; text-decoration:underline; }");
    editorKit.setStyleSheet(styleSheet);
    infoText.setEditorKit(editorKit);
    infoText.addHyperlinkListener(new HyperlinkListener() {

        @Override
        public void hyperlinkUpdate(HyperlinkEvent e) {
            if (e.getEventType() == HyperlinkEvent.EventType.ACTIVATED) {
                boolean error = false;
                if (Desktop.isDesktopSupported()) {
                    try {
                        Desktop.getDesktop().browse(new URI(e.getDescription()));
                    } catch (IOException | URISyntaxException ex) {
                        LOGGER.error("Language selection failed to open translation page hyperlink: ",
                                ex.getMessage());
                        LOGGER.trace("", ex);
                        error = true;
                    }
                } else {
                    LOGGER.warn("Desktop is not supported, the clicked translation page link can't be opened");
                    error = true;
                }
                if (error) {
                    JOptionPane.showOptionDialog(dialog,
                            String.format(buildString("LanguageSelection.6", true), PMS.CROWDIN_LINK),
                            buildString("Dialog.Error"), JOptionPane.DEFAULT_OPTION, JOptionPane.ERROR_MESSAGE,
                            null, null, null);
                }
            }
        }

    });

    rootPanel.add(selectionPanel);
    rootPanel.add(infoText);

    applyButton.addActionListener(new ApplyButtonActionListener());
    applyButton.setActionCommand("apply");

    selectButton.addActionListener(new SelectButtonActionListener());
    selectButton.setActionCommand("select");

    return rootPanel;

}

From source file:dk.dma.epd.common.prototype.gui.notification.MsiNmNotificationPanel.java

/**
 * {@inheritDoc}/*from  w  w  w .  j av a2 s.  co  m*/
 */
@Override
protected void buildGUI() {
    setLayout(new BorderLayout());
    setBorder(BorderFactory.createEmptyBorder(10, 10, 10, 10));

    contentPane.setEditable(false);
    contentPane.setOpaque(false);
    contentPane.putClientProperty(JEditorPane.HONOR_DISPLAY_PROPERTIES, Boolean.TRUE);
    contentPane.addHyperlinkListener(this);

    StyleSheet styleSheet = ((HTMLEditorKit) contentPane.getEditorKit()).getStyleSheet();
    styleSheet.addRule("a {color: #8888FF;}");
    styleSheet.addRule(".title {font-size: 14px;}");

    add(scrollPane, BorderLayout.CENTER);
}

From source file:EditorPaneExample15.java

public void modifyStyleSheet(StyleSheet s) {
    s.addRule("h1 { color: teal; text-decoration: underline; text-style: italic }"
            + " p { color: blue; font-family: monospace }");
}

From source file:juicebox.windowui.QCDialog.java

public QCDialog(MainWindow mainWindow, HiC hic, String title) {
    super(mainWindow);

    Dataset dataset = hic.getDataset();// w ww . j a v a2s.c  o  m

    String text = dataset.getStatistics();
    String textDescription = null;
    String textStatistics = null;
    String graphs = dataset.getGraphs();
    JTextPane description = null;
    JTabbedPane tabbedPane = new JTabbedPane();
    HTMLEditorKit kit = new HTMLEditorKit();

    StyleSheet styleSheet = kit.getStyleSheet();
    styleSheet.addRule("table { border-collapse: collapse;}");
    styleSheet.addRule("body {font-family: Sans-Serif; font-size: 12;}");
    styleSheet.addRule("td { padding: 2px; }");
    styleSheet.addRule(
            "th {border-bottom: 1px solid #000; text-align: left; background-color: #D8D8D8; font-weight: normal;}");

    if (text != null) {
        int split = text.indexOf("</table>") + 8;
        textDescription = text.substring(0, split);
        textStatistics = text.substring(split);
        description = new JTextPane();
        description.setEditable(false);
        description.setContentType("text/html");
        description.setEditorKit(kit);
        description.setText(textDescription);
        tabbedPane.addTab("About Library", description);

        JTextPane textPane = new JTextPane();
        textPane.setEditable(false);
        textPane.setContentType("text/html");

        textPane.setEditorKit(kit);
        textPane.setText(textStatistics);
        JScrollPane pane = new JScrollPane(textPane);
        tabbedPane.addTab("Statistics", pane);
    }
    boolean success = true;
    if (graphs != null) {

        long[] A = new long[2000];
        long sumA = 0;
        long[] mapq1 = new long[201];
        long[] mapq2 = new long[201];
        long[] mapq3 = new long[201];
        long[] intraCount = new long[100];
        final XYSeries intra = new XYSeries("Intra Count");
        final XYSeries leftRead = new XYSeries("Left");
        final XYSeries rightRead = new XYSeries("Right");
        final XYSeries innerRead = new XYSeries("Inner");
        final XYSeries outerRead = new XYSeries("Outer");
        final XYSeries allMapq = new XYSeries("All MapQ");
        final XYSeries intraMapq = new XYSeries("Intra MapQ");
        final XYSeries interMapq = new XYSeries("Inter MapQ");

        Scanner scanner = new Scanner(graphs);
        try {
            while (!scanner.next().equals("["))
                ;

            for (int idx = 0; idx < 2000; idx++) {
                A[idx] = scanner.nextLong();
                sumA += A[idx];
            }

            while (!scanner.next().equals("["))
                ;
            for (int idx = 0; idx < 201; idx++) {
                mapq1[idx] = scanner.nextInt();
                mapq2[idx] = scanner.nextInt();
                mapq3[idx] = scanner.nextInt();

            }

            for (int idx = 199; idx >= 0; idx--) {
                mapq1[idx] = mapq1[idx] + mapq1[idx + 1];
                mapq2[idx] = mapq2[idx] + mapq2[idx + 1];
                mapq3[idx] = mapq3[idx] + mapq3[idx + 1];
                allMapq.add(idx, mapq1[idx]);
                intraMapq.add(idx, mapq2[idx]);
                interMapq.add(idx, mapq3[idx]);
            }
            while (!scanner.next().equals("["))
                ;
            for (int idx = 0; idx < 100; idx++) {
                int tmp = scanner.nextInt();
                if (tmp != 0)
                    innerRead.add(logXAxis[idx], tmp);
                intraCount[idx] = tmp;
                tmp = scanner.nextInt();
                if (tmp != 0)
                    outerRead.add(logXAxis[idx], tmp);
                intraCount[idx] += tmp;
                tmp = scanner.nextInt();
                if (tmp != 0)
                    rightRead.add(logXAxis[idx], tmp);
                intraCount[idx] += tmp;
                tmp = scanner.nextInt();
                if (tmp != 0)
                    leftRead.add(logXAxis[idx], tmp);
                intraCount[idx] += tmp;
                if (idx > 0)
                    intraCount[idx] += intraCount[idx - 1];
                if (intraCount[idx] != 0)
                    intra.add(logXAxis[idx], intraCount[idx]);
            }
        } catch (NoSuchElementException exception) {
            JOptionPane.showMessageDialog(getParent(), "Graphing file improperly formatted", "Error",
                    JOptionPane.ERROR_MESSAGE);
            success = false;
        }

        if (success) {
            final XYSeriesCollection readTypeCollection = new XYSeriesCollection();
            readTypeCollection.addSeries(innerRead);
            readTypeCollection.addSeries(outerRead);
            readTypeCollection.addSeries(leftRead);
            readTypeCollection.addSeries(rightRead);

            final JFreeChart readTypeChart = ChartFactory.createXYLineChart("Types of reads vs distance", // chart title
                    "Distance (log)", // domain axis label
                    "Binned Reads (log)", // range axis label
                    readTypeCollection, // data
                    PlotOrientation.VERTICAL, true, // include legend
                    true, false);

            final XYPlot readTypePlot = readTypeChart.getXYPlot();

            readTypePlot.setDomainAxis(new LogarithmicAxis("Distance (log)"));
            readTypePlot.setRangeAxis(new LogarithmicAxis("Binned Reads (log)"));
            readTypePlot.setBackgroundPaint(Color.white);
            readTypePlot.setRangeGridlinePaint(Color.lightGray);
            readTypePlot.setDomainGridlinePaint(Color.lightGray);
            readTypeChart.setBackgroundPaint(Color.white);
            readTypePlot.setOutlinePaint(Color.black);
            final ChartPanel chartPanel = new ChartPanel(readTypeChart);

            final XYSeriesCollection reCollection = new XYSeriesCollection();
            final XYSeries reDistance = new XYSeries("Distance");

            for (int i = 0; i < A.length; i++) {
                if (A[i] != 0)
                    reDistance.add(i, A[i] / (float) sumA);
            }
            reCollection.addSeries(reDistance);

            final JFreeChart reChart = ChartFactory.createXYLineChart(
                    "Distance from closest restriction enzyme site", // chart title
                    "Distance (bp)", // domain axis label
                    "Fraction of Reads (log)", // range axis label
                    reCollection, // data
                    PlotOrientation.VERTICAL, true, // include legend
                    true, false);

            final XYPlot rePlot = reChart.getXYPlot();
            rePlot.setDomainAxis(new NumberAxis("Distance (bp)"));
            rePlot.setRangeAxis(new LogarithmicAxis("Fraction of Reads (log)"));
            rePlot.setBackgroundPaint(Color.white);
            rePlot.setRangeGridlinePaint(Color.lightGray);
            rePlot.setDomainGridlinePaint(Color.lightGray);
            reChart.setBackgroundPaint(Color.white);
            rePlot.setOutlinePaint(Color.black);
            final ChartPanel chartPanel2 = new ChartPanel(reChart);

            final XYSeriesCollection intraCollection = new XYSeriesCollection();

            intraCollection.addSeries(intra);

            final JFreeChart intraChart = ChartFactory.createXYLineChart("Intra reads vs distance", // chart title
                    "Distance (log)", // domain axis label
                    "Cumulative Sum of Binned Reads (log)", // range axis label
                    intraCollection, // data
                    PlotOrientation.VERTICAL, true, // include legend
                    true, false);

            final XYPlot intraPlot = intraChart.getXYPlot();
            intraPlot.setDomainAxis(new LogarithmicAxis("Distance (log)"));
            intraPlot.setRangeAxis(new NumberAxis("Cumulative Sum of Binned Reads (log)"));
            intraPlot.setBackgroundPaint(Color.white);
            intraPlot.setRangeGridlinePaint(Color.lightGray);
            intraPlot.setDomainGridlinePaint(Color.lightGray);
            intraChart.setBackgroundPaint(Color.white);
            intraPlot.setOutlinePaint(Color.black);
            final ChartPanel chartPanel3 = new ChartPanel(intraChart);

            final XYSeriesCollection mapqCollection = new XYSeriesCollection();
            mapqCollection.addSeries(allMapq);
            mapqCollection.addSeries(intraMapq);
            mapqCollection.addSeries(interMapq);

            final JFreeChart mapqChart = ChartFactory.createXYLineChart("MapQ Threshold Count", // chart title
                    "MapQ threshold", // domain axis label
                    "Count", // range axis label
                    mapqCollection, // data
                    PlotOrientation.VERTICAL, true, // include legend
                    true, // include tooltips
                    false);

            final XYPlot mapqPlot = mapqChart.getXYPlot();
            mapqPlot.setBackgroundPaint(Color.white);
            mapqPlot.setRangeGridlinePaint(Color.lightGray);
            mapqPlot.setDomainGridlinePaint(Color.lightGray);
            mapqChart.setBackgroundPaint(Color.white);
            mapqPlot.setOutlinePaint(Color.black);
            final ChartPanel chartPanel4 = new ChartPanel(mapqChart);

            tabbedPane.addTab("Pair Type", chartPanel);
            tabbedPane.addTab("Restriction", chartPanel2);
            tabbedPane.addTab("Intra vs Distance", chartPanel3);
            tabbedPane.addTab("MapQ", chartPanel4);
        }
    }

    final ExpectedValueFunction df = hic.getDataset().getExpectedValues(hic.getZoom(),
            hic.getNormalizationType());
    if (df != null) {
        double[] expected = df.getExpectedValues();
        final XYSeriesCollection collection = new XYSeriesCollection();
        final XYSeries expectedValues = new XYSeries("Expected");
        for (int i = 0; i < expected.length; i++) {
            if (expected[i] > 0)
                expectedValues.add(i + 1, expected[i]);
        }
        collection.addSeries(expectedValues);
        String title1 = "Expected at " + hic.getZoom() + " norm " + hic.getNormalizationType();
        final JFreeChart readTypeChart = ChartFactory.createXYLineChart(title1, // chart title
                "Distance between reads (log)", // domain axis label
                "Genome-wide expected (log)", // range axis label
                collection, // data
                PlotOrientation.VERTICAL, false, // include legend
                true, false);
        final XYPlot readTypePlot = readTypeChart.getXYPlot();

        readTypePlot.setDomainAxis(new LogarithmicAxis("Distance between reads (log)"));
        readTypePlot.setRangeAxis(new LogarithmicAxis("Genome-wide expected (log)"));
        readTypePlot.setBackgroundPaint(Color.white);
        readTypePlot.setRangeGridlinePaint(Color.lightGray);
        readTypePlot.setDomainGridlinePaint(Color.lightGray);
        readTypeChart.setBackgroundPaint(Color.white);
        readTypePlot.setOutlinePaint(Color.black);
        final ChartPanel chartPanel5 = new ChartPanel(readTypeChart);

        tabbedPane.addTab("Expected", chartPanel5);
    }

    if (text == null && graphs == null) {
        JOptionPane.showMessageDialog(this, "Sorry, no metrics are available for this dataset", "Error",
                JOptionPane.ERROR_MESSAGE);
        setVisible(false);
        dispose();

    } else {
        getContentPane().add(tabbedPane);
        pack();
        setModal(false);
        setLocation(100, 100);
        setTitle(title);
        setVisible(true);
    }
}