Example usage for javax.xml.bind JAXB unmarshal

Introduction

In this page you can find the example usage for javax.xml.bind JAXB unmarshal.

Prototype

public static <T> T unmarshal(Source xml, Class<T> type) 

Source Link

Document

Reads in a Java object tree from the given XML input.

Usage

From source file:gov.nist.healthcare.ttt.parsing.Parsing.java

public static boolean isRegistryResponseSuccessFullHeaders(String mtom) throws IOException {
    String soapEnv = Parsing.findSoapOfRegistryResponse(mtom);
    Envelope env = (Envelope) JAXB.unmarshal(new StringReader(soapEnv), Envelope.class);

    List<Object> body = env.getBody().getAny();
    Iterator it = body.iterator();
    if (it.hasNext()) {
        Element next = (Element) it.next();
        String regRep = MiscUtil.xmlToString(next);
        return Parsing.isRegistryResponseSuccess(regRep);
    } else {/*from  w w  w .  j  a v a  2s. c  o m*/
        return false;
    }

}

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From source file:org.apache.juddi.v3.tck.UDDI_160_RESTIntergrationTest.java

@Test
public void InquiryREST_GET_Service() throws Exception {
    Assume.assumeTrue(TckPublisher.isEnabled());
    Assume.assumeTrue(TckPublisher.isInquiryRestEnabled());
    //find the first service via inquriy soap
    FindService fb = new FindService();
    fb.setMaxRows(1);//from   ww  w  .j av a2s . c o m
    fb.getName().add(new Name(UDDIConstants.WILDCARD, null));
    fb.setFindQualifiers(new FindQualifiers());
    fb.getFindQualifiers().getFindQualifier().add(UDDIConstants.APPROXIMATE_MATCH);
    ServiceList findService = inquiry.findService(fb);
    Assume.assumeTrue(findService != null);
    Assume.assumeTrue(findService.getServiceInfos() != null);
    Assume.assumeTrue(!findService.getServiceInfos().getServiceInfo().isEmpty());

    String url = manager.getClientConfig().getHomeNode().getInquiry_REST_Url();

    Assume.assumeNotNull(url);

    //get the results via inquiry rest
    HttpClient client = new DefaultHttpClient();
    HttpGet httpGet = new HttpGet(
            url + "?serviceKey=" + findService.getServiceInfos().getServiceInfo().get(0).getServiceKey());
    logger.info("Fetching " + httpGet.getURI());
    HttpResponse response = client.execute(httpGet);

    Assert.assertTrue(response.getStatusLine().getStatusCode() == 200);
    logger.info("Response content: " + response.getEntity().getContent());
    BusinessService unmarshal = JAXB.unmarshal(response.getEntity().getContent(), BusinessService.class);
    client.getConnectionManager().shutdown();
    Assert.assertNotNull(unmarshal);
    Assert.assertEquals(unmarshal.getServiceKey(),
            findService.getServiceInfos().getServiceInfo().get(0).getServiceKey());

}

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From source file:it.geosolutions.geobatch.destination.ingestion.GateIngestionProcess.java

/**
 * Imports the gate data from the exported file to database.
 * /*from w w  w.  ja v a  2 s  . c o m*/
 * @param ignorePks Flag to indicates that should ignore pks in the xml file and
 *        create a new one with a sequence manager
 * @throws IOException
 * 
 * @return resume of the operation in a map
 */
public Map<String, Object> doProcess(boolean ignorePks, boolean copyFileAtEnd, String successPath,
        String failPath) throws IOException {

    Map<String, Object> result = new HashMap<String, Object>();
    List<Long> ids = new ArrayList<Long>();
    reset();
    this.ignorePks = ignorePks;
    if (isValid()) {

        int process = -1;
        int trace = -1;
        int errors = 0;
        int total = 0;
        int processed = 0;
        float percent = 0;

        try {

            process = createProcess();

            // write log for the imported file
            trace = logFile(process, DEFAULT_GATE_TYPE, PARTNER, PARTNER_CODE, date, false);

            // Read xml file
            ExportData exportData = null;
            try {
                exportData = JAXB.unmarshal(file, ExportData.class);
            } catch (Exception e) {
                String msg = "Unknown file format for gate ingestion";
                updateProgress(90, msg);
                metadataHandler.logError(trace, errors, msg, getError(e), 0);
                throw new IOException(msg);
            }

            if (exportData != null && exportData.getTransits().size() == 1) {
                Transits transits = exportData.getTransits().get(0);
                total = transits.getTransit().size();
                float ftot = new Float(total);

                // Insert one by one
                for (Transit transit : transits.getTransit()) {
                    Long id = null;
                    try {

                        // Update status
                        inputCount++;
                        float fproc = new Float(++processed);
                        String msg = "Importing data in transit table: " + (processed) + "/" + total;
                        percent = (fproc++ / ftot);
                        if (processed % 100 == 0) {
                            updateProgress(percent * 100, msg);
                            if (LOGGER.isInfoEnabled()) {
                                LOGGER.info(msg);
                            }
                        }

                        // insert
                        id = createTransit(transit);

                        // add to result
                        if (id != null) {
                            // Trace insert
                            if (LOGGER.isTraceEnabled()) {
                                LOGGER.trace("Correctly insert id " + id);
                            }
                            ids.add(id);
                        } else {
                            if (LOGGER.isTraceEnabled()) {
                                LOGGER.trace("Error on gate ingestion for element " + inputCount);
                            }
                        }

                    } catch (Exception e) {
                        errors++;
                        if (id != null) {
                            metadataHandler.logError(trace, errors, "Error on gate ingestion", getError(e),
                                    id.intValue());
                            /*String msg = "Error on gate ingestion for id "
                            + id.intValue();
                            updateProgress(percent * 100, msg);
                            LOGGER.error(msg);*/
                        } else {
                            metadataHandler.logError(trace, errors, "Error importing element " + inputCount,
                                    getError(e), 0);
                            /*String msg = "Error on gate ingestion for element "
                            + inputCount;
                            updateProgress(percent * 100, msg);
                            LOGGER.error(msg);*/
                        }
                    }
                }
            } else {
                LOGGER.error("Incorrect format for ingestion");
            }

            // all complete
            importFinished(total, errors, "Data imported in transit table");
            metadataHandler.updateLogFile(trace, total, errors, true);

        } catch (IOException e) {
            errors++;
            metadataHandler.logError(trace, errors, "Error importing data", getError(e), 0);

            // close current process phase
            process = closeProcess(process);

            throw e;
        } finally {
            if (process != -1) {
                // close current process phase
                metadataHandler.closeProcessPhase(process, "A");
            }

        }

        // save counts
        result.put(ERROR_COUNT, errors);
        result.put(PROCESSED_COUNT, processed);
        result.put(TOTAL_COUNT, total);

        if (copyFileAtEnd) {
            if (errors > 0) {
                copyFile(file, failPath);
            } else {
                copyFile(file, successPath);
            }
        }

        // close current process phase
        process = closeProcess(process);
    }

    // save ids
    result.put(IDS, ids);

    return result;
}

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From source file:it.geosolutions.geobatch.opensdi.ndvi.NDVIStatsAction.java

/**
 * This method obtain all data for the resources configured and generate the CSV file 
 * //from w  w  w  . ja va2 s .c  o  m
 * @param file
 * 
 * @throws Exception
 */
private void processXMLFile(File file) throws Exception {

    StatsBean sb = JAXB.unmarshal(file, StatsBean.class);

    if (LOGGER.isTraceEnabled()) {
        LOGGER.trace("Working NDVI action : " + sb.toString());
    }

    CLASSIFIER_TYPE classifier = sb.getClassifier();
    MASK_TYPE mask = sb.getForestMask();

    String ndviFileName = sb.getNdviFileName();

    SimpleFeatureCollection fc = getClassifiers(classifier, mask);

    GridCoverage2D coverage = null;
    try {
        coverage = getNdviTiff(ndviFileName);
        generateCSV(coverage, fc, classifier, mask, ndviFileName, configuration.getCsvSeparator(),
                sb.getForestMaskFullPath());
    } finally {
        if (coverage != null) {
            disposeCoverage(coverage);
        }
    }

}

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From source file:gov.nist.healthcare.ttt.parsing.Parsing.java

private static MetadataLevel getMetadataLevelFromSoap(String soap) {
    Envelope env = (Envelope) JAXB.unmarshal(new StringReader(soap), Envelope.class);
    List<Object> headers = env.getHeader().getAny();
    if (headers == null) {
        return MetadataLevel.XDS;
    }//from ww  w. j  a va  2 s.  c  o m
    Iterator it = headers.iterator();
    while (it.hasNext()) {
        Element header = (Element) it.next();
        if (header.getLocalName().equals(ELEMENT_NAME_METADATA_LEVEL)
                && header.getNamespaceURI().equals(NAMESPACE_DIRECT)) {
            String metadataLevel = header.getFirstChild().getTextContent();
            if (metadataLevel.equals(METADATA_LEVEL_MINIMAL)) {
                return MetadataLevel.MINIMAL;
            } else if (metadataLevel.equals(METADATA_LEVEL_XDS)) {
                return MetadataLevel.XDS;
            }
        } else if (header.getLocalName().equals(ELEMENT_NAME_DIRECT_ADDRESS_BLOCK)
                && header.getNamespaceURI().equals(NAMESPACE_DIRECT)) {
            Element directAddressBlock = header;
            NodeList childrenDirectAddressBlock = directAddressBlock.getChildNodes();
            for (int i = 0; i < childrenDirectAddressBlock.getLength(); i++) {
                Element child = null;
                if (childrenDirectAddressBlock.item(i) instanceof Element) {
                    child = (Element) childrenDirectAddressBlock.item(i);
                    if (child.getLocalName().equals(ELEMENT_NAME_METADATA_LEVEL)
                            && child.getNamespaceURI().equals(NAMESPACE_DIRECT)) {
                        String metadataLevel = child.getFirstChild().getTextContent();
                        if (metadataLevel.equals(METADATA_LEVEL_MINIMAL)) {
                            return MetadataLevel.MINIMAL;
                        } else if (metadataLevel.equals(METADATA_LEVEL_XDS)) {
                            return MetadataLevel.XDS;
                        }
                    }
                }
            }
        }
    }
    return MetadataLevel.XDS;
}

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From source file:org.apache.juddi.v3.tck.UDDI_160_RESTIntergrationTest.java

@Test
public void InquiryREST_GET_Binding() throws Exception {
    Assume.assumeTrue(TckPublisher.isEnabled());
    Assume.assumeTrue(TckPublisher.isInquiryRestEnabled());

    BindingTemplate bt = getFirstBindingTemplate();
    Assume.assumeTrue(bt != null);//ww w .ja v  a2 s.c om

    String url = manager.getClientConfig().getHomeNode().getInquiry_REST_Url();

    Assume.assumeNotNull(url);
    HttpClient client = new DefaultHttpClient();
    HttpGet httpGet = new HttpGet(url + "?bindingKey=" + bt.getBindingKey());
    logger.info("Fetching " + httpGet.getURI());
    HttpResponse response = client.execute(httpGet);

    Assert.assertTrue(response.getStatusLine().getStatusCode() == 200);
    logger.info("Response content: " + response.getEntity().getContent());
    BindingTemplate unmarshal = JAXB.unmarshal(response.getEntity().getContent(), BindingTemplate.class);
    client.getConnectionManager().shutdown();
    Assert.assertNotNull(unmarshal);
    Assert.assertEquals(unmarshal.getServiceKey(), bt.getServiceKey());
    Assert.assertEquals(unmarshal.getBindingKey(), bt.getBindingKey());

}

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From source file:gov.nist.healthcare.ttt.parsing.Parsing.java

public static DirectAddressing getDirectAddressing(String mtom) throws MessagingException, IOException {

    SOAPWithAttachment swa = Parsing.parseMtom(mtom);
    DirectAddressing directAddressing = new DirectAddressing();
    Envelope env = (Envelope) JAXB.unmarshal(new StringReader(swa.getSoap()), Envelope.class);
    List<Object> headers = env.getHeader().getAny();
    if (headers == null) {
        return directAddressing;
    }// ww  w  .jav  a 2 s.c  o m
    Iterator it = headers.iterator();
    boolean foundDirectAddressBlock = false;
    while (it.hasNext()) {
        Element header = (Element) it.next();
        if (header.getLocalName().equals(ELEMENT_NAME_DIRECT_ADDRESS_BLOCK)
                && header.getNamespaceURI().equals(NAMESPACE_DIRECT)) {
            foundDirectAddressBlock = true;
            NodeList directFrom = header.getElementsByTagNameNS(NAMESPACE_DIRECT, ELEMENT_NAME_DIRECT_FROM);
            NodeList directTo = header.getElementsByTagNameNS(NAMESPACE_DIRECT, ELEMENT_NAME_DIRECT_TO);

            directAddressing.setDirectFrom(directFrom.item(0).getFirstChild().getNodeValue());
            directAddressing.setDirectTo(directTo.item(0).getFirstChild().getNodeValue());
        } else if (header.getLocalName().equals(ELEMENT_NAME_WSA_MESSAGEID)
                && header.getNamespaceURI().equals(NAMESPACE_WSA)) {
            directAddressing.setMessageID(header.getFirstChild().getNodeValue());
        }
    }
    return directAddressing;
}

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From source file:cz.cas.lib.proarc.common.fedora.RemoteStorageTest.java

@Test
public void testXmlWrite() throws Exception {
    String dsId = "testId";
    LocalObject local = new LocalStorage().create();
    local.setLabel(test.getMethodName());
    String format = "testns";
    XmlStreamEditor leditor = local.getEditor(FoxmlUtils.inlineProfile(dsId, format, "label"));
    EditorResult editorResult = leditor.createResult();
    TestXml content = new TestXml("test content");
    JAXB.marshal(content, editorResult);
    leditor.write(editorResult, 0, null);

    RemoteStorage fedora = new RemoteStorage(client);
    fedora.ingest(local, "junit");

    RemoteObject remote = fedora.find(local.getPid());
    RemoteXmlStreamEditor editor = new RemoteXmlStreamEditor(remote, dsId);
    Source src = editor.read();/*from  w  w w  . j  a v  a  2  s  .c o m*/
    assertNotNull(src);
    TestXml resultContent = JAXB.unmarshal(src, TestXml.class);

    // write modification
    String expectedContent = "changed test content";
    resultContent.data = expectedContent;
    editorResult = editor.createResult();
    JAXB.marshal(resultContent, editorResult);
    long lastModified = editor.getLastModified();
    assertEquals(format, editor.getProfile().getDsFormatURI());
    editor.write(editorResult, lastModified, null);
    remote.flush();

    // test current editor
    assertTrue(lastModified < editor.getLastModified());
    long expectLastModified = editor.getLastModified();
    resultContent = JAXB.unmarshal(editor.read(), TestXml.class);
    assertEquals(new TestXml(expectedContent), resultContent);
    assertEquals(format, editor.getProfile().getDsFormatURI());

    // test new editor
    remote = fedora.find(local.getPid());
    editor = new RemoteXmlStreamEditor(remote, dsId);
    src = editor.read();
    assertNotNull(src);
    resultContent = JAXB.unmarshal(src, TestXml.class);
    assertEquals(new TestXml(expectedContent), resultContent);
    long resultLastModified = editor.getLastModified();
    assertEquals(expectLastModified, resultLastModified);
    assertEquals(format, editor.getProfile().getDsFormatURI());
}

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From source file:gov.nist.healthcare.ttt.parsing.Parsing.java

private static String getDocumentFromSoap(String soap) {
    Envelope env = (Envelope) JAXB.unmarshal(new StringReader(soap), Envelope.class);

    Body body = env.getBody();//  w w w  .  j av a 2s .com
    List<Object> any = body.getAny();
    Element regresp = (Element) any.get(0);

    ProvideAndRegisterDocumentSetRequestType pnr = (ProvideAndRegisterDocumentSetRequestType) JAXB.unmarshal(
            new StringReader(MiscUtil.xmlToString(regresp)), ProvideAndRegisterDocumentSetRequestType.class);
    List<Document> documents = pnr.getDocument();
    if (!documents.isEmpty()) {
        Document document = documents.get(0);
        byte[] documentByteArray = document.getValue();

        String payload = new String(documentByteArray);
        if (Parsing.isBase64Encoded(payload)) {
            return new String(Base64.getDecoder().decode(documentByteArray));
        } else {
            return payload;
        }
    }
    return null;
}

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