Example usage for javax.xml.bind JAXBException printStackTrace

Introduction

In this page you can find the example usage for javax.xml.bind JAXBException printStackTrace.

Prototype

public void printStackTrace() 

Source Link

Document

Prints this JAXBException and its stack trace (including the stack trace of the linkedException if it is non-null) to System.err .

Usage

From source file:edu.harvard.i2b2.PdoEGtoFhirBundle.java

@Test
public void Test23() throws XQueryUtilException {

    String medsBundle = null;// getMeds();
    // logger.trace("getMEds:"+medsBundle);
    try {/*w w  w .  j ava2s .  c  o  m*/
        Bundle b = JAXBUtil.fromXml(medsBundle, Bundle.class);
        MedicationStatement ms = b.getEntry().get(1).getResource().getMedicationStatement();
        logger.trace(JAXBUtil.toXml(ms));
        logger.trace(ms.getPatient().getReference().getValue().toString());
    } catch (JAXBException e) {
        e.printStackTrace();
    }

}

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From source file:net.itransformers.idiscover.v2.core.listeners.Neo4JGraphmlLoggerLogDiscoveryListener.java

@Override
public void nodeDiscovered(NodeDiscoveryResult discoveryResult) {
    File baseDir = new File(projectPath, labelDirName);
    File xsltFile = new File(xsltFileName);
    File graphmlDir = new File(baseDir, graphmDirName);

    GraphDatabaseService graphdb = new org.neo4j.rest.graphdb.RestGraphDatabase(graphDbUrl);

    if (!graphmlDir.exists())
        graphmlDir.mkdir();/*from www  . j a  v  a  2  s  .  c  o m*/

    String deviceName = discoveryResult.getNodeId();
    DiscoveredDeviceData discoveredDeviceData = (DiscoveredDeviceData) discoveryResult
            .getDiscoveredData(dataType);
    ByteArrayOutputStream graphMLOutputStream = new ByteArrayOutputStream();

    ByteArrayOutputStream out = new ByteArrayOutputStream();
    try {
        JaxbMarshalar.marshal(discoveredDeviceData, out, "DiscoveredDevice");
    } catch (JAXBException e) {
        e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
    }

    XsltTransformer transformer = new XsltTransformer();
    try {
        transformer.transformXML(new ByteArrayInputStream(out.toByteArray()), xsltFile, graphMLOutputStream,
                null, null);
    } catch (Exception e) {
        logger.error(e.getMessage(), e);
    }

    final String fileName = "node-" + deviceName + ".graphml";
    final File nodeFile = new File(graphmlDir, fileName);
    String unformatedGraphml = new String(graphMLOutputStream.toByteArray());

    try {
        String graphml = new XmlFormatter().format(unformatedGraphml);

        FileUtils.writeStringToFile(nodeFile, graphml);
        FileWriter writer = new FileWriter(new File(labelDirName, "undirected" + ".graphmls"), true);
        writer.append(String.valueOf(fileName)).append("\n");
        writer.close();
    } catch (IOException e) {
        logger.debug("Unformated xml is not in correct format: \n" + unformatedGraphml);
        e.printStackTrace();
    } catch (ParserConfigurationException e) {
        e.printStackTrace();
    } catch (SAXException e) {
        e.printStackTrace();
    }

    Neo4jGraphmlMerger neo4jMerger = new Neo4jGraphmlMerger(graphdb, "v1");
    Transaction tx = graphdb.beginTx();

    try {
        tx = graphdb.beginTx();
        neo4jMerger.merge(nodeFile);
        tx.success();
    } catch (Exception e) {
        if (tx != null)
            tx.failure();
    } finally {
        if (tx != null)
            tx.finish();
    }

}

---

From source file:net.itransformers.idiscover.v2.core.listeners.node.GraphmlFileLogGroovyDiscoveryListener.java

@Override
public void nodeDiscovered(NodeDiscoveryResult discoveryResult) {
    File baseDir = new File(projectPath, labelDirName);
    File graphmlDir = new File(baseDir, graphmlDirName);
    if (!graphmlDir.exists())
        graphmlDir.mkdir();//from w  w w .  j a  va  2s .c o m

    String deviceName = discoveryResult.getNodeId();
    if (deviceName == null)
        return;
    //This is a case of a subnetKind of a node or other nodes without nodeId.

    DiscoveredDeviceData discoveredDeviceData = (DiscoveredDeviceData) discoveryResult
            .getDiscoveredData("deviceData");

    ByteArrayOutputStream out = new ByteArrayOutputStream();
    try {
        JaxbMarshalar.marshal(discoveredDeviceData, out, "DiscoveredDevice");
    } catch (JAXBException e) {
        e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
    }

    StringReader reader = new StringReader(out.toString());

    StringWriter graphmlWriter = new StringWriter();
    transformRawDataToGraphml(reader, graphmlWriter);

    try {
        final String fileName = "node-" + deviceName + ".graphml";
        //            String fullFileName = path + File.separator + fileName;
        final File nodeFile = new File(graphmlDir, fileName);
        //System.out.println(new String(graphmlWriter.toString()));
        String graphml;

        graphml = new XmlFormatter().format(graphmlWriter.toString());

        FileUtils.writeStringToFile(nodeFile, graphml);
        File undirectedGraphmls = new File(graphmlDir.getParent(), "undirected" + ".graphmls");
        if (!undirectedGraphmls.exists()) {
            undirectedGraphmls.createNewFile();
        }
        FileWriter writer = new FileWriter(undirectedGraphmls, true);

        writer.append(String.valueOf(fileName)).append("\n");
        writer.close();

    } catch (IOException e) {
        logger.debug("Unformated xml is not in correct format: \n" + graphmlWriter.toString());
        e.printStackTrace();
    } catch (ParserConfigurationException e) {

        logger.debug("Unformated xml is not in correct format: \n" + graphmlWriter.toString());

        e.printStackTrace();
    } catch (SAXException e) {
        logger.debug("Unformated xml is not in correct format: \n" + graphmlWriter.toString());
        e.printStackTrace();
    }

}

---

From source file:net.itransformers.idiscover.v2.core.listeners.node.Neo4JGraphmlLoggerLogDiscoveryListener.java

@Override
public void nodeDiscovered(NodeDiscoveryResult discoveryResult) {
    File baseDir = new File(projectPath, labelDirName);
    File xsltFile = new File(xsltFileName);
    File graphmlDir = new File(baseDir, graphmlDirName);

    GraphDatabaseService graphdb = new org.neo4j.rest.graphdb.RestGraphDatabase(graphDbUrl);

    if (!graphmlDir.exists())
        graphmlDir.mkdir();//from   www.  j  a va2s . c o  m

    String deviceName = discoveryResult.getNodeId();
    DiscoveredDeviceData discoveredDeviceData = (DiscoveredDeviceData) discoveryResult
            .getDiscoveredData(dataType);
    ByteArrayOutputStream graphMLOutputStream = new ByteArrayOutputStream();

    ByteArrayOutputStream out = new ByteArrayOutputStream();
    try {
        JaxbMarshalar.marshal(discoveredDeviceData, out, "DiscoveredDevice");
    } catch (JAXBException e) {
        e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
    }

    XsltTransformer transformer = new XsltTransformer();
    try {
        transformer.transformXML(new ByteArrayInputStream(out.toByteArray()), xsltFile, graphMLOutputStream);
    } catch (Exception e) {
        logger.error(e.getMessage(), e);
    }

    final String fileName = "node-" + deviceName + ".graphml";
    final File nodeFile = new File(graphmlDir, fileName);
    String unformatedGraphml = new String(graphMLOutputStream.toByteArray());

    try {
        String graphml = new XmlFormatter().format(unformatedGraphml);

        FileUtils.writeStringToFile(nodeFile, graphml);
        FileWriter writer = new FileWriter(new File(labelDirName, "undirected" + ".graphmls"), true);
        writer.append(String.valueOf(fileName)).append("\n");
        writer.close();
    } catch (IOException e) {
        logger.debug("Unformated xml is not in correct format: \n" + unformatedGraphml);
        e.printStackTrace();
    } catch (ParserConfigurationException e) {
        e.printStackTrace();
    } catch (SAXException e) {
        e.printStackTrace();
    }

    Neo4jGraphmlMerger neo4jMerger = new Neo4jGraphmlMerger(graphdb, "v1");
    Transaction tx = graphdb.beginTx();

    try {
        tx = graphdb.beginTx();
        neo4jMerger.merge(nodeFile);
        tx.success();
    } catch (Exception e) {
        if (tx != null)
            tx.failure();
    } finally {
        if (tx != null)
            tx.finish();
    }

}

---

From source file:eu.modaclouds.sla.service.rest.AbstractSLARest.java

protected String printError(int code, String text) {
    ByteArrayOutputStream out = new ByteArrayOutputStream();
    try {//ww  w  .j a  v a  2  s. c om
        ErrorResponse errorResponse = new ErrorResponse();

        errorResponse.setCode(code);
        errorResponse.setMessage(text);

        JAXBContext jaxbContext;
        jaxbContext = JAXBContext.newInstance(eu.atos.sla.parser.data.ErrorResponse.class);
        Marshaller marshaller = jaxbContext.createMarshaller();

        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);

        marshaller.marshal(errorResponse, out);
    } catch (JAXBException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }

    return out.toString();

}

---

From source file:eu.modaclouds.sla.service.rest.AbstractSLARest.java

protected String printMessage(int code, String text) {
    ByteArrayOutputStream out = new ByteArrayOutputStream();
    try {// w w w .  j  a  v a2 s  .c  om

        MessageResponse messageResponse = new MessageResponse();

        messageResponse.setCode(code);
        messageResponse.setMessage(text);

        JAXBContext jaxbContext = JAXBContext.newInstance(eu.atos.sla.parser.data.MessageResponse.class);
        Marshaller marshaller = jaxbContext.createMarshaller();

        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);

        marshaller.marshal(messageResponse, out);
    } catch (JAXBException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }

    return out.toString();

}

---

From source file:de.uni_potsdam.hpi.bpt.promnicat.importer.ibm.IBMModelImporter.java

private Model parseModel(File file, String id) {
    Model model = new Model(file.getName(), Constants.ORIGIN_IBM, id);
    Revision revision = new Revision(0);
    revision.connectRepresentation(new Representation(Constants.FORMAT_XML, Constants.NOTATION_BPMN2_0, file));
    try {/*from w w  w  .  ja v a2  s  .com*/
        revision.connectRepresentation(new Representation(Constants.FORMAT_BPMAI_JSON,
                Constants.NOTATION_BPMN2_0, parseIBMBPMN2Diagram(file).getBytes()));
    } catch (JAXBException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    } catch (JSONException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }

    model.connectLatestRevision(revision);
    return model;
}

---

From source file:com.spend.spendService.DomainLearning.java

private SearchEngines getSearchEnginesFromXml() {
    try {/*from   w w w  .  jav a  2  s.c o  m*/
        File file = new File("SearchEngines.xml");
        JAXBContext jaxbContext = JAXBContext.newInstance(SearchEngines.class);
        Unmarshaller jaxbUnmarshaller = jaxbContext.createUnmarshaller();
        SearchEngines searchEngineList = (SearchEngines) jaxbUnmarshaller.unmarshal(file);
        return searchEngineList;
    } catch (JAXBException ex) {
        System.out.println("DomainLearning.java getSearchEnginesFromXml function ERROR " + ex.getMessage());
        ex.printStackTrace();
    }
    return null;
}

---

From source file:eu.learnpad.core.impl.cw.XwikiBridgeInterfaceRestResource.java

@Override
public void notifyScoreUpdate(ScoreRecord record) throws LpRestException {
    String contentType = "application/xml";
    HttpClient httpClient = this.getClient();
    String uri = String.format("%s/learnpad/cw/bridge/scores", DefaultRestResource.REST_URI);
    PostMethod postMethod = new PostMethod(uri);
    postMethod.addRequestHeader(HttpHeaders.CONTENT_TYPE, contentType);

    try {//from   w w w  .  j av  a2  s  .com
        JAXBContext jc = JAXBContext.newInstance(ScoreRecord.class);
        Writer marshalledRecord = new StringWriter();

        Marshaller marshaller = jc.createMarshaller();
        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
        marshaller.marshal(record, marshalledRecord);

        postMethod.setRequestEntity(new StringRequestEntity(marshalledRecord.toString(), contentType, "UTF-8"));

        httpClient.executeMethod(postMethod);
    } catch (JAXBException e1) {
        e1.printStackTrace();
    } catch (UnsupportedEncodingException e1) {
        e1.printStackTrace();
    } catch (IOException e) {
        e.printStackTrace();
    }

}

---

From source file:com.sarm.lonelyplanet.process.DestinationProcessorTest.java

/**
 * This method tests the JAXB provider. The validates if the JAXB provider
 * is eclipse provider MOXy. In essence it tests that the jaxb.properties
 * file is present and it has the correct JAXBContextFactory configured.
 *//*from   w w  w .  j a v  a 2s  . co m*/
@Test
public void testJAXBContext() {
    logger.info("Testing testJAXBContext ");
    JAXBContext jc = null;
    try {

        jc = JAXBContext.newInstance(Destinations.class);
    } catch (JAXBException ex) {
        logger.error(ex);
        ex.printStackTrace();
    }
    String context = "class org.eclipse.persistence.jaxb.JAXBContext";
    assertEquals(context, jc.getClass().toString());

}

---

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