Example usage for org.apache.commons.cli GnuParser GnuParser

List of usage examples for org.apache.commons.cli GnuParser GnuParser

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In this page you can find the example usage for org.apache.commons.cli GnuParser GnuParser.

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GnuParser

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Usage

From source file:com.mindquarry.jcr.change.ChangeClient.java

public static void main(String[] args) {
    log = LogFactory.getLog(ChangeClient.class);
    log.info("Starting persistence client...");

    // parse command line arguments
    CommandLine line = null;//from  w w  w.j  a v a2s  .c o m
    CommandLineParser parser = new GnuParser();
    try {
        // parse the command line arguments
        line = parser.parse(options, args);
    } catch (ParseException e) {
        // oops, something went wrong
        log.error("Parsing of command line failed.");
        printUsage();
        return;
    }
    // check debug option
    boolean debug = false;
    if (line.hasOption(O_DRY)) {
        log.info("Running in 'dry' mode.");
        debug = true;
    }
    // start change client
    ChangeClient cl = new ChangeClient();
    try {
        cl.run(line.getOptionValue(O_REPO), line.getOptionValue(O_USER), line.getOptionValue(O_PWD),
                line.getOptionValue(O_XSLT), line.getOptionValue(O_FOLDER), debug);
    } catch (Exception e) {
        log.error("Error while applying changes.", e);
    }
    log.info("Changes applied.");
}

From source file:apps.quantification.LearnQuantificationSVMLight.java

public static void main(String[] args) throws IOException {
    String cmdLineSyntax = LearnQuantificationSVMLight.class.getName()
            + " [OPTIONS] <path to svm_light_learn> <path to svm_light_classify> <trainingIndexDirectory> <outputDirectory>";

    Options options = new Options();

    OptionBuilder.withArgName("f");
    OptionBuilder.withDescription("Number of folds");
    OptionBuilder.withLongOpt("f");
    OptionBuilder.isRequired(true);/*  www . j a  va  2s .  c  o  m*/
    OptionBuilder.hasArg();
    options.addOption(OptionBuilder.create());

    OptionBuilder.withArgName("c");
    OptionBuilder.withDescription("The c value for svm_light (default 1)");
    OptionBuilder.withLongOpt("c");
    OptionBuilder.isRequired(false);
    OptionBuilder.hasArg();
    options.addOption(OptionBuilder.create());

    OptionBuilder.withArgName("k");
    OptionBuilder.withDescription("Kernel type (default 0: linear, 1: polynomial, 2: RBF, 3: sigmoid)");
    OptionBuilder.withLongOpt("k");
    OptionBuilder.isRequired(false);
    OptionBuilder.hasArg();
    options.addOption(OptionBuilder.create());

    OptionBuilder.withArgName("t");
    OptionBuilder.withDescription("Path for temporary files");
    OptionBuilder.withLongOpt("t");
    OptionBuilder.isRequired(false);
    OptionBuilder.hasArg();
    options.addOption(OptionBuilder.create());

    OptionBuilder.withArgName("v");
    OptionBuilder.withDescription("Verbose output");
    OptionBuilder.withLongOpt("v");
    OptionBuilder.isRequired(false);
    OptionBuilder.hasArg(false);
    options.addOption(OptionBuilder.create());

    OptionBuilder.withArgName("s");
    OptionBuilder.withDescription("Don't delete temporary training file in svm_light format (default: delete)");
    OptionBuilder.withLongOpt("s");
    OptionBuilder.isRequired(false);
    OptionBuilder.hasArg(false);
    options.addOption(OptionBuilder.create());

    SvmLightLearnerCustomizer classificationLearnerCustomizer = null;
    SvmLightClassifierCustomizer classificationCustomizer = null;

    int folds = -1;

    GnuParser parser = new GnuParser();
    String[] remainingArgs = null;
    try {
        CommandLine line = parser.parse(options, args);

        remainingArgs = line.getArgs();

        classificationLearnerCustomizer = new SvmLightLearnerCustomizer(remainingArgs[0]);
        classificationCustomizer = new SvmLightClassifierCustomizer(remainingArgs[1]);

        folds = Integer.parseInt(line.getOptionValue("f"));

        if (line.hasOption("c"))
            classificationLearnerCustomizer.setC(Float.parseFloat(line.getOptionValue("c")));

        if (line.hasOption("k")) {
            System.out.println("Kernel type: " + line.getOptionValue("k"));
            classificationLearnerCustomizer.setKernelType(Integer.parseInt(line.getOptionValue("k")));
        }

        if (line.hasOption("v"))
            classificationLearnerCustomizer.printSvmLightOutput(true);

        if (line.hasOption("s"))
            classificationLearnerCustomizer.setDeleteTrainingFiles(false);

        if (line.hasOption("t")) {
            classificationLearnerCustomizer.setTempPath(line.getOptionValue("t"));
            classificationCustomizer.setTempPath(line.getOptionValue("t"));
        }

    } catch (Exception exp) {
        System.err.println("Parsing failed.  Reason: " + exp.getMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(cmdLineSyntax, options);
        System.exit(-1);
    }

    assert (classificationLearnerCustomizer != null);

    if (remainingArgs.length != 4) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(cmdLineSyntax, options);
        System.exit(-1);
    }

    String indexFile = remainingArgs[2];

    File file = new File(indexFile);

    String indexName = file.getName();
    String indexPath = file.getParent();

    String outputPath = remainingArgs[3];

    SvmLightLearner classificationLearner = new SvmLightLearner();

    classificationLearner.setRuntimeCustomizer(classificationLearnerCustomizer);

    FileSystemStorageManager fssm = new FileSystemStorageManager(indexPath, false);
    fssm.open();

    IIndex training = TroveReadWriteHelper.readIndex(fssm, indexName, TroveContentDBType.Full,
            TroveClassificationDBType.Full);

    final TextualProgressBar progressBar = new TextualProgressBar("Learning the quantifiers");

    IOperationStatusListener status = new IOperationStatusListener() {

        @Override
        public void operationStatus(double percentage) {
            progressBar.signal((int) percentage);
        }
    };

    QuantificationLearner quantificationLearner = new QuantificationLearner(folds, classificationLearner,
            classificationLearnerCustomizer, classificationCustomizer, ClassificationMode.PER_CATEGORY,
            new LogisticFunction(), status);

    IQuantifier[] quantifiers = quantificationLearner.learn(training);

    File executableFile = new File(classificationLearnerCustomizer.getSvmLightLearnPath());
    IDataManager classifierDataManager = new SvmLightDataManager(new SvmLightClassifierCustomizer(
            executableFile.getParentFile().getAbsolutePath() + Os.pathSeparator() + "svm_light_classify"));
    String description = "_SVMLight_C-" + classificationLearnerCustomizer.getC() + "_K-"
            + classificationLearnerCustomizer.getKernelType();
    if (classificationLearnerCustomizer.getAdditionalParameters().length() > 0)
        description += "_" + classificationLearnerCustomizer.getAdditionalParameters();
    String quantifierPrefix = indexName + "_Quantifier-" + folds + description;

    FileSystemStorageManager fssmo = new FileSystemStorageManager(
            outputPath + File.separatorChar + quantifierPrefix, true);
    fssmo.open();
    QuantificationLearner.write(quantifiers, fssmo, classifierDataManager);
    fssmo.close();

    BufferedWriter bfs = new BufferedWriter(
            new FileWriter(outputPath + File.separatorChar + quantifierPrefix + "_rates.txt"));
    TShortDoubleHashMap simpleTPRs = quantificationLearner.getSimpleTPRs();
    TShortDoubleHashMap simpleFPRs = quantificationLearner.getSimpleFPRs();
    TShortDoubleHashMap scaledTPRs = quantificationLearner.getScaledTPRs();
    TShortDoubleHashMap scaledFPRs = quantificationLearner.getScaledFPRs();

    ContingencyTableSet contingencyTableSet = quantificationLearner.getContingencyTableSet();

    short[] cats = simpleTPRs.keys();
    for (int i = 0; i < cats.length; ++i) {
        short cat = cats[i];
        String catName = training.getCategoryDB().getCategoryName(cat);
        ContingencyTable contingencyTable = contingencyTableSet.getCategoryContingencyTable(cat);
        double simpleTPR = simpleTPRs.get(cat);
        double simpleFPR = simpleFPRs.get(cat);
        double scaledTPR = scaledTPRs.get(cat);
        double scaledFPR = scaledFPRs.get(cat);
        String line = quantifierPrefix + "\ttrain\tsimple\t" + catName + "\t" + cat + "\t"
                + contingencyTable.tp() + "\t" + contingencyTable.fp() + "\t" + contingencyTable.fn() + "\t"
                + contingencyTable.tn() + "\t" + simpleTPR + "\t" + simpleFPR + "\n";
        bfs.write(line);
        line = quantifierPrefix + "\ttrain\tscaled\t" + catName + "\t" + cat + "\t" + contingencyTable.tp()
                + "\t" + contingencyTable.fp() + "\t" + contingencyTable.fn() + "\t" + contingencyTable.tn()
                + "\t" + scaledTPR + "\t" + scaledFPR + "\n";
        bfs.write(line);
    }
    bfs.close();
}

From source file:net.mybox.mybox.ServerSetup.java

/**
 * Handle command line arguments//from   ww  w  .  j  ava2 s  .  co m
 * @param args
 */
public static void main(String[] args) {

    Options options = new Options();
    options.addOption("a", "apphome", true, "application home directory");
    options.addOption("h", "help", false, "show help screen");
    options.addOption("V", "version", false, "print the Mybox version");

    CommandLineParser line = new GnuParser();
    CommandLine cmd = null;

    try {
        cmd = line.parse(options, args);
    } catch (Exception exp) {
        System.err.println(exp.getMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(Server.class.getName(), options);
        return;
    }

    if (cmd.hasOption("h")) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(Server.class.getName(), options);
        return;
    }

    if (cmd.hasOption("V")) {
        Server.printMessage("version " + Common.appVersion);
        return;
    }

    if (cmd.hasOption("a")) {
        String appHomeDir = cmd.getOptionValue("a");
        try {
            Common.updatePaths(appHomeDir);
        } catch (FileNotFoundException e) {
            Server.printErrorExit(e.getMessage());
        }

        Server.updatePaths();
    }

    ServerSetup setup = new ServerSetup();
}

From source file:fr.inria.atlanmod.instantiator.neoEMF.Launcher.java

public static void main(String[] args) throws GenerationException, IOException {

    ResourceSetImpl resourceSet = new ResourceSetImpl();
    { // initializing the registry

        resourceSet.getResourceFactoryRegistry().getExtensionToFactoryMap().put(EcorePackage.eNS_PREFIX,
                new EcoreResourceFactoryImpl());
        resourceSet.getResourceFactoryRegistry().getExtensionToFactoryMap()
                .put(Resource.Factory.Registry.DEFAULT_EXTENSION, new XMIResourceFactoryImpl());
        resourceSet.getResourceFactoryRegistry().getProtocolToFactoryMap().put(NeoEMFURI.NEOEMF_HBASE_SCHEME,
                NeoEMFResourceFactory.eINSTANCE);

    }// w w w  . ja  v  a 2s  . c o  m

    Options options = new Options();

    configureOptions(options);

    CommandLineParser parser = new GnuParser();

    try {
        CommandLine commandLine = parser.parse(options, args);

        String epackage_class = commandLine.getOptionValue(E_PACKAGE_CLASS);

        LOGGER.info("Start loading the package");
        Class<?> inClazz = Launcher.class.getClassLoader().loadClass(epackage_class);
        EPackage _package = (EPackage) inClazz.getMethod("init").invoke(null);

        Resource metamodelResource = new XMIResourceImpl(URI.createFileURI("dummy"));
        metamodelResource.getContents().add(_package);
        LOGGER.info("Finish loading the package");

        int size = Launcher.DEFAULT_AVERAGE_MODEL_SIZE;
        if (commandLine.hasOption(SIZE)) {
            Number number = (Number) commandLine.getParsedOptionValue(SIZE);
            size = (int) Math.min(Integer.MAX_VALUE, number.longValue());
        }

        float variation = Launcher.DEFAULT_DEVIATION;
        if (commandLine.hasOption(VARIATION)) {
            Number number = (Number) commandLine.getParsedOptionValue(VARIATION);
            if (number.floatValue() < 0.0f || number.floatValue() > 1.0f) {
                throw new ParseException(MessageFormat.format("Invalid value for option -{0}: {1}", VARIATION,
                        number.floatValue()));
            }
            variation = number.floatValue();
        }

        float propVariation = Launcher.DEFAULT_DEVIATION;
        if (commandLine.hasOption(PROP_VARIATION)) {
            Number number = (Number) commandLine.getParsedOptionValue(PROP_VARIATION);
            if (number.floatValue() < 0.0f || number.floatValue() > 1.0f) {
                throw new ParseException(MessageFormat.format("Invalid value for option -{0}: {1}",
                        PROP_VARIATION, number.floatValue()));
            }
            propVariation = number.floatValue();
        }

        long seed = System.currentTimeMillis();
        if (commandLine.hasOption(SEED)) {
            seed = ((Number) commandLine.getParsedOptionValue(SEED)).longValue();
        }

        Range<Integer> range = Range.between(Math.round(size * (1 - variation)),
                Math.round(size * (1 + variation)));

        GenericMetamodelConfig config = new GenericMetamodelConfig(metamodelResource, range, seed);
        GenericMetamodelGenerator modelGen = new GenericMetamodelGenerator(config);

        if (commandLine.hasOption(OUTPUT_PATH)) {
            String outDir = commandLine.getOptionValue(OUTPUT_PATH);
            //java.net.URI intermediateURI = java.net.URI.create(outDir);
            modelGen.setSamplesPath(outDir);
        }

        int numberOfModels = 1;
        if (commandLine.hasOption(N_MODELS)) {
            numberOfModels = ((Number) commandLine.getParsedOptionValue(N_MODELS)).intValue();
        }

        int valuesSize = GenericMetamodelConfig.DEFAULT_AVERAGE_VALUES_LENGTH;
        if (commandLine.hasOption(VALUES_SIZE)) {
            Number number = (Number) commandLine.getParsedOptionValue(VALUES_SIZE);
            valuesSize = (int) Math.min(Integer.MAX_VALUE, number.longValue());
        }

        int referencesSize = GenericMetamodelConfig.DEFAULT_AVERAGE_REFERENCES_SIZE;
        if (commandLine.hasOption(VALUES_SIZE)) {
            Number number = (Number) commandLine.getParsedOptionValue(DEGREE);
            referencesSize = (int) Math.min(Integer.MAX_VALUE, number.longValue());
        }

        config.setValuesRange(Math.round(valuesSize * (1 - propVariation)),
                Math.round(valuesSize * (1 + propVariation)));

        config.setReferencesRange(Math.round(referencesSize * (1 - propVariation)),
                Math.round(referencesSize * (1 + propVariation)));

        config.setPropertiesRange(Math.round(referencesSize * (1 - propVariation)),
                Math.round(referencesSize * (1 + propVariation)));

        long start = System.currentTimeMillis();
        modelGen.runGeneration(resourceSet, numberOfModels, size, variation);
        long end = System.currentTimeMillis();
        LOGGER.info(
                MessageFormat.format("Generation finished after {0} s", Long.toString((end - start) / 1000)));

        if (commandLine.hasOption(DIAGNOSE)) {
            for (Resource resource : resourceSet.getResources()) {
                LOGGER.info(
                        MessageFormat.format("Requested validation for resource ''{0}''", resource.getURI()));
                BasicDiagnostic diagnosticChain = diagnoseResource(resource);
                if (!isFailed(diagnosticChain)) {
                    LOGGER.info(MessageFormat.format("Result of the diagnosis of resurce ''{0}'' is ''OK''",
                            resource.getURI()));
                } else {
                    LOGGER.severe(MessageFormat.format("Found ''{0}'' error(s) in the resource ''{1}''",
                            diagnosticChain.getChildren().size(), resource.getURI()));
                    for (Diagnostic diagnostic : diagnosticChain.getChildren()) {
                        LOGGER.fine(diagnostic.getMessage());
                    }
                }
            }
            LOGGER.info("Validation finished");
        }

    } catch (ParseException e) {
        System.err.println(e.getLocalizedMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.setOptionComparator(new OptionComarator<Option>());
        try {
            formatter.setWidth(Math.max(Terminal.getTerminal().getTerminalWidth(), 80));
        } catch (Throwable t) {
            LOGGER.warning("Unable to get console information");
        }
        ;
        formatter.printHelp("java -jar <this-file.jar>", options, true);
        System.exit(ERROR);
    } catch (ClassNotFoundException t) {
        System.err.println("ERROR: Unable to load class" + t.getLocalizedMessage());
        StringWriter stringWriter = new StringWriter();
        t.printStackTrace(new PrintWriter(stringWriter));
        System.err.println(stringWriter.toString());
    } catch (Throwable t) {
        System.err.println("ERROR: " + t.getLocalizedMessage());
        StringWriter stringWriter = new StringWriter();
        t.printStackTrace(new PrintWriter(stringWriter));
        System.err.println(t);
        LOGGER.severe(stringWriter.toString());
        System.exit(ERROR);
    }
}

From source file:de.unisb.cs.st.javaslicer.jung.ShowJungGraph.java

public static void main(String[] args) throws InterruptedException {
    Options options = createOptions();/*  w w  w  . j  ava  2  s  . c om*/
    CommandLineParser parser = new GnuParser();
    CommandLine cmdLine;

    try {
        cmdLine = parser.parse(options, args, true);
    } catch (ParseException e) {
        System.err.println("Error parsing the command line arguments: " + e.getMessage());
        return;
    }

    if (cmdLine.hasOption('h')) {
        printHelp(options, System.out);
        System.exit(0);
    }

    String[] additionalArgs = cmdLine.getArgs();
    if (additionalArgs.length != 2) {
        printHelp(options, System.err);
        System.exit(-1);
    }
    File traceFile = new File(additionalArgs[0]);
    String slicingCriterionString = additionalArgs[1];

    Long threadId = null;
    if (cmdLine.hasOption('t')) {
        try {
            threadId = Long.parseLong(cmdLine.getOptionValue('t'));
        } catch (NumberFormatException e) {
            System.err.println("Illegal thread id: " + cmdLine.getOptionValue('t'));
            System.exit(-1);
        }
    }

    TraceResult trace;
    try {
        trace = TraceResult.readFrom(traceFile);
    } catch (IOException e) {
        System.err.format("Could not read the trace file \"%s\": %s%n", traceFile, e);
        System.exit(-1);
        return;
    }

    List<SlicingCriterion> sc = null;
    try {
        sc = StaticSlicingCriterion.parseAll(slicingCriterionString, trace.getReadClasses());
    } catch (IllegalArgumentException e) {
        System.err.println("Error parsing slicing criterion: " + e.getMessage());
        System.exit(-1);
        return;
    }

    List<ThreadId> threads = trace.getThreads();
    if (threads.size() == 0) {
        System.err.println("The trace file contains no tracing information.");
        System.exit(-1);
    }

    ThreadId tracing = null;
    for (ThreadId t : threads) {
        if (threadId == null) {
            if ("main".equals(t.getThreadName())
                    && (tracing == null || t.getJavaThreadId() < tracing.getJavaThreadId()))
                tracing = t;
        } else if (t.getJavaThreadId() == threadId.longValue()) {
            tracing = t;
        }
    }

    if (tracing == null) {
        System.err.println(threadId == null ? "Couldn't find the main thread."
                : "The thread you specified was not found.");
        System.exit(-1);
        return;
    }

    Transformer<InstructionInstance, Object> transformer;
    Transformer<Object, String> vertexLabelTransformer;
    Transformer<Object, String> vertexTooltipTransformer;

    String granularity = cmdLine.getOptionValue("granularity");
    if (granularity == null || "instance".equals(granularity)) {
        transformer = new Transformer<InstructionInstance, Object>() {
            @Override
            public InstructionInstance transform(InstructionInstance inst) {
                return inst;
            }
        };
        vertexLabelTransformer = new Transformer<Object, String>() {
            @Override
            public String transform(Object inst) {
                return getShortInstructionText(((InstructionInstance) inst).getInstruction());
            }
        };
        vertexTooltipTransformer = new Transformer<Object, String>() {
            @Override
            public String transform(Object inst) {
                return getInstructionTooltip(((InstructionInstance) inst).getInstruction());
            }
        };
    } else if ("instruction".equals(granularity)) {
        transformer = new Transformer<InstructionInstance, Object>() {
            @Override
            public Instruction transform(InstructionInstance inst) {
                return inst.getInstruction();
            }
        };
        vertexLabelTransformer = new Transformer<Object, String>() {
            @Override
            public String transform(Object inst) {
                return getShortInstructionText(((Instruction) inst));
            }
        };
        vertexTooltipTransformer = new Transformer<Object, String>() {
            @Override
            public String transform(Object inst) {
                return getInstructionTooltip(((Instruction) inst));
            }
        };
    } else if ("line".equals(granularity)) {
        transformer = new Transformer<InstructionInstance, Object>() {
            @Override
            public Line transform(InstructionInstance inst) {
                return new Line(inst.getInstruction().getMethod(), inst.getInstruction().getLineNumber());
            }
        };
        vertexLabelTransformer = new Transformer<Object, String>() {
            @Override
            public String transform(Object inst) {
                Line line = (Line) inst;
                return line.getMethod().getName() + ":" + line.getLineNr();
            }
        };
        vertexTooltipTransformer = new Transformer<Object, String>() {
            @Override
            public String transform(Object inst) {
                Line line = (Line) inst;
                return "Line " + line.getLineNr() + " in method " + line.getMethod().getReadClass().getName()
                        + "." + line.getMethod();
            }
        };
    } else {
        System.err.println("Illegal granularity specification: " + granularity);
        System.exit(-1);
        return;
    }

    int maxLevel = Integer.MAX_VALUE;
    if (cmdLine.hasOption("maxlevel")) {
        try {
            maxLevel = Integer.parseInt(cmdLine.getOptionValue("maxlevel"));
        } catch (NumberFormatException e) {
            System.err.println("Argument to \"maxlevel\" must be an integer.");
            System.exit(-1);
            return;
        }
    }

    long startTime = System.nanoTime();
    ShowJungGraph<Object> showGraph = new ShowJungGraph<Object>(trace, transformer);
    showGraph.setMaxLevel(maxLevel);
    showGraph.setVertexLabelTransformer(vertexLabelTransformer);
    showGraph.setVertexTooltipTransformer(vertexTooltipTransformer);
    if (cmdLine.hasOption("progress"))
        showGraph.addProgressMonitor(new ConsoleProgressMonitor());
    boolean multithreaded;
    if (cmdLine.hasOption("multithreaded")) {
        String multithreadedStr = cmdLine.getOptionValue("multithreaded");
        multithreaded = ("1".equals(multithreadedStr) || "true".equals(multithreadedStr));
    } else {
        multithreaded = Runtime.getRuntime().availableProcessors() > 1;
    }

    DirectedGraph<Object, SliceEdge<Object>> graph = showGraph.getGraph(tracing, sc, multithreaded);
    long endTime = System.nanoTime();

    System.out.format((Locale) null, "%nSlice graph consists of %d nodes.%n", graph.getVertexCount());
    System.out.format((Locale) null, "Computation took %.2f seconds.%n", 1e-9 * (endTime - startTime));

    showGraph.displayGraph(graph);
}

From source file:fr.inria.atlanmod.dag.instantiator.Launcher.java

public static void main(String[] args) throws GenerationException, IOException {

    ResourceSetImpl resourceSet = new ResourceSetImpl();
    { // initializing the registry

        resourceSet.getResourceFactoryRegistry().getExtensionToFactoryMap().put(EcorePackage.eNS_PREFIX,
                new EcoreResourceFactoryImpl());
        resourceSet.getResourceFactoryRegistry().getExtensionToFactoryMap()
                .put(Resource.Factory.Registry.DEFAULT_EXTENSION, new XMIResourceFactoryImpl());
        resourceSet.getResourceFactoryRegistry().getProtocolToFactoryMap().put(NeoEMFURI.NEOEMF_HBASE_SCHEME,
                NeoEMFResourceFactory.eINSTANCE);

    }//from www.jav  a  2  s  . c  o m

    Options options = new Options();

    configureOptions(options);

    CommandLineParser parser = new GnuParser();

    try {
        CommandLine commandLine = parser.parse(options, args);

        //         String epackage_class = commandLine.getOptionValue(E_PACKAGE_CLASS);
        //         
        //         LOGGER.info("Start loading the package");
        //         Class<?> inClazz = Launcher.class.getClassLoader().loadClass(epackage_class);
        //         EPackage _package = (EPackage) inClazz.getMethod("init").invoke(null);
        //         
        //         Resource metamodelResource = new XMIResourceImpl(URI.createFileURI("dummy"));
        //          metamodelResource.getContents().add(_package);
        //          LOGGER.info("Finish loading the package");

        int size = Launcher.DEFAULT_AVERAGE_MODEL_SIZE;
        if (commandLine.hasOption(SIZE)) {
            Number number = (Number) commandLine.getParsedOptionValue(SIZE);
            size = (int) Math.min(Integer.MAX_VALUE, number.longValue());
        }

        float variation = Launcher.DEFAULT_DEVIATION;
        if (commandLine.hasOption(VARIATION)) {
            Number number = (Number) commandLine.getParsedOptionValue(VARIATION);
            if (number.floatValue() < 0.0f || number.floatValue() > 1.0f) {
                throw new ParseException(MessageFormat.format("Invalid value for option -{0}: {1}", VARIATION,
                        number.floatValue()));
            }
            variation = number.floatValue();
        }

        float propVariation = Launcher.DEFAULT_DEVIATION;
        if (commandLine.hasOption(PROP_VARIATION)) {
            Number number = (Number) commandLine.getParsedOptionValue(PROP_VARIATION);
            if (number.floatValue() < 0.0f || number.floatValue() > 1.0f) {
                throw new ParseException(MessageFormat.format("Invalid value for option -{0}: {1}",
                        PROP_VARIATION, number.floatValue()));
            }
            propVariation = number.floatValue();
        }

        long seed = System.currentTimeMillis();
        if (commandLine.hasOption(SEED)) {
            seed = ((Number) commandLine.getParsedOptionValue(SEED)).longValue();
        }

        Range<Integer> range = Range.between(Math.round(size * (1 - variation)),
                Math.round(size * (1 + variation)));

        ISpecimenConfiguration config = new DagMetamodelConfig(range, seed);
        IGenerator generator = new DagGenerator(config, config.getSeed());

        GenericMetamodelGenerator modelGen = new GenericMetamodelGenerator(generator);

        if (commandLine.hasOption(OUTPUT_PATH)) {
            String outDir = commandLine.getOptionValue(OUTPUT_PATH);
            //java.net.URI intermediateURI = java.net.URI.create(outDir);
            modelGen.setSamplesPath(outDir);
        }

        int numberOfModels = 1;
        if (commandLine.hasOption(N_MODELS)) {
            numberOfModels = ((Number) commandLine.getParsedOptionValue(N_MODELS)).intValue();
        }

        int valuesSize = GenericMetamodelConfig.DEFAULT_AVERAGE_VALUES_LENGTH;
        if (commandLine.hasOption(VALUES_SIZE)) {
            Number number = (Number) commandLine.getParsedOptionValue(VALUES_SIZE);
            valuesSize = (int) Math.min(Integer.MAX_VALUE, number.longValue());
        }

        int referencesSize = GenericMetamodelConfig.DEFAULT_AVERAGE_REFERENCES_SIZE;
        if (commandLine.hasOption(DEGREE)) {
            Number number = (Number) commandLine.getParsedOptionValue(DEGREE);
            referencesSize = (int) Math.min(Integer.MAX_VALUE, number.longValue());
        }

        config.setValuesRange(Math.round(valuesSize * (1 - propVariation)),
                Math.round(valuesSize * (1 + propVariation)));

        config.setReferencesRange(Math.round(referencesSize * (1 - propVariation)),
                Math.round(referencesSize * (1 + propVariation)));

        config.setPropertiesRange(Math.round(referencesSize * (1 - propVariation)),
                Math.round(referencesSize * (1 + propVariation)));

        long start = System.currentTimeMillis();
        modelGen.runGeneration(resourceSet, numberOfModels, size, variation);
        long end = System.currentTimeMillis();
        LOGGER.info(
                MessageFormat.format("Generation finished after {0} s", Long.toString((end - start) / 1000)));

        //         for (Resource rsc : resourceSet.getResources()) {
        //            if (rsc.getContents().get(0) instanceof DAG) {
        //               
        //            }
        //               
        //         }

        if (commandLine.hasOption(DIAGNOSE)) {
            for (Resource resource : resourceSet.getResources()) {
                LOGGER.info(
                        MessageFormat.format("Requested validation for resource ''{0}''", resource.getURI()));
                BasicDiagnostic diagnosticChain = diagnoseResource(resource);
                if (!isFailed(diagnosticChain)) {
                    LOGGER.info(MessageFormat.format("Result of the diagnosis of resurce ''{0}'' is ''OK''",
                            resource.getURI()));
                } else {
                    LOGGER.severe(MessageFormat.format("Found ''{0}'' error(s) in the resource ''{1}''",
                            diagnosticChain.getChildren().size(), resource.getURI()));
                    for (Diagnostic diagnostic : diagnosticChain.getChildren()) {
                        LOGGER.fine(diagnostic.getMessage());
                    }
                }
            }
            LOGGER.info("Validation finished");
        }

    } catch (ParseException e) {
        System.err.println(e.getLocalizedMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.setOptionComparator(new OptionComarator<Option>());
        try {
            formatter.setWidth(Math.max(Terminal.getTerminal().getTerminalWidth(), 80));
        } catch (Throwable t) {
            LOGGER.warning("Unable to get console information");
        }
        ;
        formatter.printHelp("java -jar <this-file.jar>", options, true);
        System.exit(ERROR);
    } catch (Throwable t) {
        System.err.println("ERROR: " + t.getLocalizedMessage());
        StringWriter stringWriter = new StringWriter();
        t.printStackTrace(new PrintWriter(stringWriter));
        System.err.println(t);
        LOGGER.severe(stringWriter.toString());
        System.exit(ERROR);
    }
}

From source file:com.ibm.watson.app.qaclassifier.AddQuestionsToMockClassifier.java

public static void main(String[] args) throws IOException {
    Option urlOption = CliUtils.createOption(URL_OPTION, URL_OPTION_LONG, true,
            "The root URL of the application to connect to. If omitted, the default will be used ("
                    + DEFAULT_URL + ")",
            false, URL_OPTION_LONG);
    Option pathOption = CliUtils.createOption(FILE_OPTION, FILE_OPTION_LONG, true,
            "The file to be used as training data, can point to the file system or the class path", true,
            FILE_OPTION_LONG);//from www.  j a v a  2s . c  o m
    Option userOption = CliUtils.createOption(USER_OPTION, USER_OPTION_LONG, true,
            "The username for the manage API", true, USER_OPTION_LONG);
    Option passwordOption = CliUtils.createOption(PASSWORD_OPTION, PASSWORD_OPTION_LONG, true,
            "The password for the manage API", true, PASSWORD_OPTION_LONG);

    final Options options = CliUtils.buildOptions(urlOption, pathOption, userOption, passwordOption);

    CommandLine cmd;
    try {
        CommandLineParser parser = new GnuParser();
        cmd = parser.parse(options, args);
    } catch (ParseException e) {
        System.err.println("Could not parse cmd line arguments.\n" + e.getMessage());
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(120, "java " + AddQuestionsToMockClassifier.class.getName(), null, options, null);
        return;
    }

    final String url = cmd.getOptionValue(URL_OPTION, DEFAULT_URL);
    final String path = cmd.getOptionValue(FILE_OPTION);
    final String user = cmd.getOptionValue(USER_OPTION);
    final String password = cmd.getOptionValue(PASSWORD_OPTION);

    AddQuestionsToMockClassifier mockSetup = new AddQuestionsToMockClassifier(url, path, user, password);

    System.out.println("Creating mock responses for the questions in " + path + "...");
    mockSetup.mockResponsesForTrainingData();

    System.out.println("Creating mock responses for the sample questions...");
    mockSetup.mockResponse(SampleQuestions.HIGH_CONFIDENCE, "mock_one_answer", HIGH_CONFIDENCE,
            "This is a question that will be answered by the mock classifier with high confidence");
    mockSetup.mockResponse(SampleQuestions.LOW_CONFIDENCE, "mock_multiple_answers", LOW_CONFIDENCE,
            "This is a question that will be answered by the mock classifier with low confidence");
    mockSetup.mockResponse(SampleQuestions.NO_ANSWERS, "mock_no_answers", NO_ANSWER_CONFIDENCE,
            "This is a question that will be answered by the mock classifier with very low confidence");
    System.out.println("Done.");
}

From source file:de.prozesskraft.pkraft.Perlcode.java

public static void main(String[] args) throws org.apache.commons.cli.ParseException, IOException {

    //      try/*from  www  .  j a  va2 s.  co m*/
    //      {
    //         if (args.length != 3)
    //         {
    //            System.out.println("Please specify processdefinition file (xml) and an outputfilename");
    //         }
    //         
    //      }
    //      catch (ArrayIndexOutOfBoundsException e)
    //      {
    //         System.out.println("***ArrayIndexOutOfBoundsException: Please specify processdefinition.xml, openoffice_template.od*, newfile_for_processdefinitions.odt\n" + e.toString());
    //      }

    /*----------------------------
      get options from ini-file
    ----------------------------*/
    File inifile = new java.io.File(
            WhereAmI.getInstallDirectoryAbsolutePath(Perlcode.class) + "/" + "../etc/pkraft-perlcode.ini");

    if (inifile.exists()) {
        try {
            ini = new Ini(inifile);
        } catch (InvalidFileFormatException e1) {
            // TODO Auto-generated catch block
            e1.printStackTrace();
        } catch (IOException e1) {
            // TODO Auto-generated catch block
            e1.printStackTrace();
        }
    } else {
        System.err.println("ini file does not exist: " + inifile.getAbsolutePath());
        System.exit(1);
    }

    /*----------------------------
      create boolean options
    ----------------------------*/
    Option ohelp = new Option("help", "print this message");
    Option ov = new Option("v", "prints version and build-date");

    /*----------------------------
      create argument options
    ----------------------------*/
    Option ostep = OptionBuilder.withArgName("STEPNAME").hasArg().withDescription(
            "[optional] stepname of step to generate a script for. if this parameter is omitted, a script for the process will be generated.")
            //            .isRequired()
            .create("step");

    Option ooutput = OptionBuilder.withArgName("DIR").hasArg()
            .withDescription("[mandatory] directory for generated files. must not exist when calling.")
            //            .isRequired()
            .create("output");

    Option odefinition = OptionBuilder.withArgName("FILE").hasArg()
            .withDescription("[mandatory] process definition file.")
            //            .isRequired()
            .create("definition");

    Option onolist = OptionBuilder.withArgName("")
            //            .hasArg()
            .withDescription(
                    "[optional] with this parameter the multiple use of multi-optionis is forced. otherwise it is possible to use an integrated comma-separeated list.")
            //            .isRequired()
            .create("nolist");

    /*----------------------------
      create options object
    ----------------------------*/
    Options options = new Options();

    options.addOption(ohelp);
    options.addOption(ov);
    options.addOption(ostep);
    options.addOption(ooutput);
    options.addOption(odefinition);
    options.addOption(onolist);

    /*----------------------------
      create the parser
    ----------------------------*/
    CommandLineParser parser = new GnuParser();
    try {
        // parse the command line arguments
        commandline = parser.parse(options, args);
    } catch (Exception exp) {
        // oops, something went wrong
        System.err.println("Parsing failed. Reason: " + exp.getMessage());
        exiter();
    }

    /*----------------------------
      usage/help
    ----------------------------*/
    if (commandline.hasOption("help")) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp("perlcode", options);
        System.exit(0);
    }

    else if (commandline.hasOption("v")) {
        System.out.println("web:     www.prozesskraft.de");
        System.out.println("version: [% version %]");
        System.out.println("date:    [% date %]");
        System.exit(0);
    }

    /*----------------------------
      ueberpruefen ob eine schlechte kombination von parametern angegeben wurde
    ----------------------------*/
    if (!(commandline.hasOption("definition"))) {
        System.err.println("option -definition is mandatory.");
        exiter();
    }

    if (!(commandline.hasOption("output"))) {
        System.err.println("option -output is mandatory.");
        exiter();
    }

    /*----------------------------
      die lizenz ueberpruefen und ggf abbrechen
    ----------------------------*/

    // check for valid license
    ArrayList<String> allPortAtHost = new ArrayList<String>();
    allPortAtHost.add(ini.get("license-server", "license-server-1"));
    allPortAtHost.add(ini.get("license-server", "license-server-2"));
    allPortAtHost.add(ini.get("license-server", "license-server-3"));

    MyLicense lic = new MyLicense(allPortAtHost, "1", "user-edition", "0.1");

    // lizenz-logging ausgeben
    for (String actLine : (ArrayList<String>) lic.getLog()) {
        System.err.println(actLine);
    }

    // abbruch, wenn lizenz nicht valide
    if (!lic.isValid()) {
        System.exit(1);
    }

    /*----------------------------
      die eigentliche business logic
    ----------------------------*/
    Process p1 = new Process();
    java.io.File outputDir = new java.io.File(commandline.getOptionValue("output"));
    java.io.File outputDirProcessScript = new java.io.File(commandline.getOptionValue("output"));
    java.io.File outputDirBin = new java.io.File(commandline.getOptionValue("output") + "/bin");
    java.io.File outputDirLib = new java.io.File(commandline.getOptionValue("output") + "/lib");
    boolean nolist = false;
    if (commandline.hasOption("nolist")) {
        nolist = true;
    }

    if (outputDir.exists()) {
        System.err.println("fatal: directory already exists: " + outputDir.getCanonicalPath());
        exiter();
    } else {
        outputDir.mkdir();
    }

    p1.setInfilexml(commandline.getOptionValue("definition"));
    System.err.println("info: reading process definition " + commandline.getOptionValue("definition"));
    Process p2 = null;
    try {
        p2 = p1.readXml();
    } catch (JAXBException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
        System.err.println("error");
        exiter();
    }

    // perlcode generieren fuer einen bestimmten step
    if (commandline.hasOption("step")) {
        outputDirBin.mkdir();
        String stepname = commandline.getOptionValue("step");
        writeStepAsPerlcode(p2, stepname, outputDirBin, nolist);
    }

    // perlcode generieren fuer den gesamten process
    else {
        outputDirBin.mkdir();
        writeProcessAsPerlcode(p2, outputDirProcessScript, outputDirBin, nolist);

        // copy all perllibs from the lib directory
        outputDirLib.mkdir();
        final Path source = Paths.get(WhereAmI.getInstallDirectoryAbsolutePath(Perlcode.class) + "/../perllib");
        final Path target = Paths.get(outputDirLib.toURI());

        copyDirectoryTree.copyDirectoryTree(source, target);
    }
}

From source file:de.topobyte.livecg.CreateImage.java

public static void main(String[] args) {
    EnumNameLookup<ExportFormat> exportSwitch = new EnumNameLookup<ExportFormat>(ExportFormat.class, true);

    EnumNameLookup<Visualization> visualizationSwitch = new EnumNameLookup<Visualization>(Visualization.class,
            true);/*  w  ww.  j av a 2  s. c  om*/

    // @formatter:off
    Options options = new Options();
    OptionHelper.add(options, OPTION_CONFIG, true, false, "path", "config file");
    OptionHelper.add(options, OPTION_INPUT, true, true, "file", "input geometry file");
    OptionHelper.add(options, OPTION_OUTPUT, true, true, "file", "output file");
    OptionHelper.add(options, OPTION_OUTPUT_FORMAT, true, true, "type",
            "type of output. one of <png,svg,tikz,ipe>");
    OptionHelper.add(options, OPTION_VISUALIZATION, true, true, "type",
            "type of visualization. one of <" + VisualizationUtil.getListOfAvailableVisualizations() + ">");
    OptionHelper.add(options, OPTION_STATUS, true, false,
            "status to " + "set the algorithm to. The format depends on the algorithm");
    // @formatter:on

    Option propertyOption = new Option(OPTION_PROPERTIES, "set a special property");
    propertyOption.setArgName("property=value");
    propertyOption.setArgs(2);
    propertyOption.setValueSeparator('=');
    options.addOption(propertyOption);

    CommandLineParser clp = new GnuParser();

    CommandLine line = null;
    try {
        line = clp.parse(options, args);
    } catch (ParseException e) {
        System.err.println("Parsing command line failed: " + e.getMessage());
        new HelpFormatter().printHelp(HELP_MESSAGE, options);
        System.exit(1);
    }

    StringOption argConfig = ArgumentHelper.getString(line, OPTION_CONFIG);
    if (argConfig.hasValue()) {
        String configPath = argConfig.getValue();
        LiveConfig.setPath(configPath);
    }

    StringOption argInput = ArgumentHelper.getString(line, OPTION_INPUT);
    StringOption argOutput = ArgumentHelper.getString(line, OPTION_OUTPUT);
    StringOption argOutputFormat = ArgumentHelper.getString(line, OPTION_OUTPUT_FORMAT);
    StringOption argVisualization = ArgumentHelper.getString(line, OPTION_VISUALIZATION);
    StringOption argStatus = ArgumentHelper.getString(line, OPTION_STATUS);

    ExportFormat exportFormat = exportSwitch.find(argOutputFormat.getValue());
    if (exportFormat == null) {
        System.err.println("Unsupported output format '" + argOutputFormat.getValue() + "'");
        System.exit(1);
    }

    Visualization visualization = visualizationSwitch.find(argVisualization.getValue());
    if (visualization == null) {
        System.err.println("Unsupported visualization '" + argVisualization.getValue() + "'");
        System.exit(1);
    }

    System.out.println("Visualization: " + visualization);
    System.out.println("Output format: " + exportFormat);

    ContentReader contentReader = new ContentReader();
    Content content = null;
    try {
        content = contentReader.read(new File(argInput.getValue()));
    } catch (Exception e) {
        System.out.println("Error while reading input file '" + argInput.getValue() + "'. Exception type: "
                + e.getClass().getSimpleName() + ", message: " + e.getMessage());
        System.exit(1);
    }

    Properties properties = line.getOptionProperties(OPTION_PROPERTIES);

    double zoom = 1;

    String statusArgument = null;
    if (argStatus.hasValue()) {
        statusArgument = argStatus.getValue();
    }

    VisualizationSetup setup = null;

    switch (visualization) {
    case GEOMETRY: {
        setup = new ContentVisualizationSetup();
        break;
    }
    case DCEL: {
        setup = new DcelVisualizationSetup();
        break;
    }
    case FREESPACE: {
        setup = new FreeSpaceVisualizationSetup();
        break;
    }
    case DISTANCETERRAIN: {
        setup = new DistanceTerrainVisualizationSetup();
        break;
    }
    case CHAN: {
        setup = new ChanVisualizationSetup();
        break;
    }
    case MONOTONE_PIECES: {
        setup = new MonotonePiecesVisualizationSetup();
        break;
    }
    case MONOTONE_TRIANGULATION: {
        setup = new MonotoneTriangulationVisualizationSetup();
        break;
    }
    case TRIANGULATION: {
        setup = new MonotonePiecesTriangulationVisualizationSetup();
        break;
    }
    case BUFFER: {
        setup = new BufferVisualizationSetup();
        break;
    }
    case FORTUNE: {
        setup = new FortunesSweepVisualizationSetup();
        break;
    }
    case SPIP: {
        setup = new ShortestPathVisualizationSetup();
        break;
    }
    }

    if (setup == null) {
        System.err.println("Not yet implemented");
        System.exit(1);
    }

    SetupResult setupResult = setup.setup(content, statusArgument, properties, zoom);

    int width = setupResult.getWidth();
    int height = setupResult.getHeight();

    VisualizationPainter visualizationPainter = setupResult.getVisualizationPainter();

    File output = new File(argOutput.getValue());

    visualizationPainter.setZoom(zoom);

    switch (exportFormat) {
    case IPE: {
        try {
            IpeExporter.exportIpe(output, visualizationPainter, width, height);
        } catch (Exception e) {
            System.err.println("Error while exporting. Exception type: " + e.getClass().getSimpleName()
                    + ", message: " + e.getMessage());
            System.exit(1);
        }
        break;
    }
    case PNG: {
        try {
            GraphicsExporter.exportPNG(output, visualizationPainter, width, height);
        } catch (IOException e) {
            System.err.println("Error while exporting. Exception type: " + e.getClass().getSimpleName()
                    + ", message: " + e.getMessage());
            System.exit(1);
        }
        break;
    }
    case SVG: {
        try {
            SvgExporter.exportSVG(output, visualizationPainter, width, height);
        } catch (Exception e) {
            System.err.println("Error while exporting. Exception type: " + e.getClass().getSimpleName()
                    + ", message: " + e.getMessage());
            System.exit(1);
        }
        break;
    }
    case TIKZ: {
        try {
            TikzExporter.exportTikz(output, visualizationPainter, width, height);
        } catch (Exception e) {
            System.err.println("Error while exporting. Exception type: " + e.getClass().getSimpleName()
                    + ", message: " + e.getMessage());
            System.exit(1);
        }
        break;
    }
    }
}

From source file:backtype.storm.command.update_topology.java

/**
 * @param args/* ww  w  .j a  v  a  2 s  . c o  m*/
 */
public static void main(String[] args) {
    if (args == null || args.length < 3) {
        System.out.println("Invalid parameter");
        usage();
        return;
    }
    String topologyName = args[0];
    try {
        String[] str2 = Arrays.copyOfRange(args, 1, args.length);
        CommandLineParser parser = new GnuParser();
        Options r = buildGeneralOptions(new Options());
        CommandLine commandLine = parser.parse(r, str2, true);

        String pathConf = null;
        String pathJar = null;
        if (commandLine.hasOption("conf")) {
            pathConf = (commandLine.getOptionValues("conf"))[0];
        }
        if (commandLine.hasOption("jar")) {
            pathJar = (commandLine.getOptionValues("jar"))[0];
        }
        if (pathConf != null || pathJar != null)
            updateTopology(topologyName, pathJar, pathConf);
    } catch (Exception e) {
        e.printStackTrace();
    }
}