Example usage for org.apache.commons.cli Option setRequired

List of usage examples for org.apache.commons.cli Option setRequired

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  6. setRequired

Introduction

In this page you can find the example usage for org.apache.commons.cli Option setRequired.

Prototype

public void setRequired(boolean required)

Source Link

Document

Sets whether this Option is mandatory.

Usage

From source file:com.genentech.chemistry.openEye.apps.SDFConformerSampler.java

/**
 * @param args/*from w  w w.  j a  v a  2 s.c  o m*/
 */
public static void main(String... args) throws IOException { // create command line Options object
    Options options = new Options();
    Option opt = new Option(OPT_INFILE, true,
            "input file oe-supported Use .sdf|.smi to specify the file type.");
    opt.setRequired(true);
    options.addOption(opt);

    opt = new Option(OPT_OUTFILE, true, "output file oe-supported. Use .sdf|.smi to specify the file type.");
    opt.setRequired(true);
    options.addOption(opt);

    opt = new Option(OPT_MAX_CONFS, true, "Maximum number of conformations per input.");
    opt.setRequired(true);
    options.addOption(opt);

    opt = new Option(OPT_TORSION_FILE, true, "Optional: to overwrite torsion definition file.");
    opt.setRequired(false);
    options.addOption(opt);

    CommandLineParser parser = new PosixParser();
    CommandLine cmd = null;
    try {
        cmd = parser.parse(options, args);
    } catch (Exception e) {
        System.err.println(e.getMessage());
        exitWithHelp(options);
    }
    args = cmd.getArgs();

    if (cmd.hasOption("d")) {
        System.err.println("Start debugger and press return:");
        new BufferedReader(new InputStreamReader(System.in)).readLine();
    }

    String inFile = cmd.getOptionValue(OPT_INFILE);
    String outFile = cmd.getOptionValue(OPT_OUTFILE);
    String smartsFile = cmd.getOptionValue(OPT_TORSION_FILE);
    long maxConfs = Long.parseLong(cmd.getOptionValue(OPT_MAX_CONFS));

    SDFConformerSampler scanner = new SDFConformerSampler(smartsFile, outFile, maxConfs);

    scanner.run(inFile);
    scanner.close();
}

From source file:com.genentech.chemistry.openEye.apps.SDFMolSeparator.java

/**
 * @param args/*from ww  w . j a  va2  s  .  c om*/
 */
public static void main(String... args) throws IOException { // create command line Options object
    Options options = new Options();
    Option opt = new Option(OPT_INFILE, true,
            "input file oe-supported Use .sdf|.smi to specify the file type.");
    opt.setRequired(true);
    options.addOption(opt);

    opt = new Option(OPT_OUTFILE, true, "output file oe-supported. Use .sdf|.smi to specify the file type.");
    opt.setRequired(true);
    options.addOption(opt);

    CommandLineParser parser = new PosixParser();
    CommandLine cmd = null;
    try {
        cmd = parser.parse(options, args);
    } catch (Exception e) {
        System.err.println(e.getMessage());
        exitWithHelp(options);
    }
    args = cmd.getArgs();

    if (cmd.hasOption("d")) {
        System.err.println("Start debugger and press return:");
        new BufferedReader(new InputStreamReader(System.in)).readLine();
    }

    String inFile = cmd.getOptionValue(OPT_INFILE);
    String outFile = cmd.getOptionValue(OPT_OUTFILE);
    SDFMolSeparator separator = new SDFMolSeparator(outFile);

    try {
        separator.run(inFile);

    } catch (IndexOutOfBoundsException iie) {
        System.err.println(iie.toString());
        exitWithHelp(options);
    } finally {
        separator.close();
    }

}

From source file:dk.netarkivet.harvester.tools.CreateIndex.java

/**
 * The main method that does the parsing of the commandline, and makes the actual index request.
 *
 * @param args the arguments//from ww  w.  j  av a2s.  c om
 */
public static void main(String[] args) {
    Options options = new Options();
    CommandLineParser parser = new PosixParser();
    CommandLine cmd = null;
    Option indexType = new Option("t", "type", true, "Type of index");
    Option jobList = new Option("l", "jobids", true, "list of jobids");
    indexType.setRequired(true);
    jobList.setRequired(true);
    options.addOption(indexType);
    options.addOption(jobList);

    try {
        // parse the command line arguments
        cmd = parser.parse(options, args);
    } catch (MissingOptionException e) {
        System.err.println("Some of the required parameters are missing: " + e.getMessage());
        dieWithUsage();
    } catch (ParseException exp) {
        System.err.println("Parsing of parameters failed: " + exp.getMessage());
        dieWithUsage();
    }

    String typeValue = cmd.getOptionValue(INDEXTYPE_OPTION);
    String jobidsValue = cmd.getOptionValue(JOBIDS_OPTION);
    String[] jobidsAsStrings = jobidsValue.split(",");
    Set<Long> jobIDs = new HashSet<Long>();
    for (String idAsString : jobidsAsStrings) {
        jobIDs.add(Long.valueOf(idAsString));
    }

    JobIndexCache cache = null;
    String indexTypeAstring = "";
    if (typeValue.equalsIgnoreCase("CDX")) {
        indexTypeAstring = "CDX";
        cache = IndexClientFactory.getCDXInstance();
    } else if (typeValue.equalsIgnoreCase("DEDUP")) {
        indexTypeAstring = "DEDUP";
        cache = IndexClientFactory.getDedupCrawllogInstance();
    } else if (typeValue.equalsIgnoreCase("CRAWLLOG")) {
        indexTypeAstring = "CRAWLLOG";
        cache = IndexClientFactory.getFullCrawllogInstance();
    } else {
        System.err.println("Unknown indextype '" + typeValue + "' requested.");
        dieWithUsage();
    }

    System.out.println("Creating " + indexTypeAstring + " index for ids: " + jobIDs);
    Index<Set<Long>> index = cache.getIndex(jobIDs);
    JMSConnectionFactory.getInstance().cleanup();
}

From source file:com.genentech.chemistry.openEye.apps.SDFSubRMSD.java

public static void main(String... args) throws IOException { // create command line Options object
    Options options = new Options();
    Option opt = new Option("in", true, "input file oe-supported");
    opt.setRequired(true);
    options.addOption(opt);//from w  w  w .j a  v a  2s . c om

    opt = new Option("out", true, "output file oe-supported");
    opt.setRequired(false);
    options.addOption(opt);

    opt = new Option("fragFile", true, "file with single 3d substructure query");
    opt.setRequired(false);
    options.addOption(opt);

    opt = new Option("isMDL", false,
            "if given the fragFile is suposed to be an mdl query file, query features are supported.");
    opt.setRequired(false);
    options.addOption(opt);

    CommandLineParser parser = new PosixParser();
    CommandLine cmd = null;
    try {
        cmd = parser.parse(options, args);
    } catch (Exception e) {
        System.err.println(e.getMessage());
        exitWithHelp(options);
    }
    args = cmd.getArgs();

    if (cmd.hasOption("d")) {
        System.err.println("Start debugger and press return:");
        new BufferedReader(new InputStreamReader(System.in)).readLine();
    }

    String inFile = cmd.getOptionValue("in");
    String outFile = cmd.getOptionValue("out");
    String fragFile = cmd.getOptionValue("fragFile");

    // read fragment
    OESubSearch ss;
    oemolistream ifs = new oemolistream(fragFile);
    OEMolBase mol;
    if (!cmd.hasOption("isMDL")) {
        mol = new OEGraphMol();
        oechem.OEReadMolecule(ifs, mol);
        ss = new OESubSearch(mol, OEExprOpts.AtomicNumber, OEExprOpts.BondOrder);
    } else {
        int aromodel = OEIFlavor.Generic.OEAroModelOpenEye;
        int qflavor = ifs.GetFlavor(ifs.GetFormat());
        ifs.SetFlavor(ifs.GetFormat(), (qflavor | aromodel));
        int opts = OEMDLQueryOpts.Default | OEMDLQueryOpts.SuppressExplicitH;
        OEQMol qmol = new OEQMol();
        oechem.OEReadMDLQueryFile(ifs, qmol, opts);
        ss = new OESubSearch(qmol);
        mol = qmol;
    }

    double nSSatoms = mol.NumAtoms();
    double sssCoords[] = new double[mol.GetMaxAtomIdx() * 3];
    mol.GetCoords(sssCoords);
    mol.Clear();
    ifs.close();

    if (!ss.IsValid())
        throw new Error("Invalid query " + args[0]);

    ifs = new oemolistream(inFile);
    oemolostream ofs = new oemolostream(outFile);
    int count = 0;

    while (oechem.OEReadMolecule(ifs, mol)) {
        count++;
        double rmsd = Double.MAX_VALUE;
        double molCoords[] = new double[mol.GetMaxAtomIdx() * 3];
        mol.GetCoords(molCoords);

        for (OEMatchBase mb : ss.Match(mol, false)) {
            double r = 0;
            for (OEMatchPairAtom mp : mb.GetAtoms()) {
                OEAtomBase asss = mp.getPattern();
                double sx = sssCoords[asss.GetIdx() * 3];
                double sy = sssCoords[asss.GetIdx() * 3];
                double sz = sssCoords[asss.GetIdx() * 3];

                OEAtomBase amol = mp.getTarget();
                double mx = molCoords[amol.GetIdx() * 3];
                double my = molCoords[amol.GetIdx() * 3];
                double mz = molCoords[amol.GetIdx() * 3];

                r += Math.sqrt((sx - mx) * (sx - mx) + (sy - my) * (sy - my) + (sz - mz) * (sz - mz));
            }
            r /= nSSatoms;
            rmsd = Math.min(rmsd, r);
        }

        if (rmsd != Double.MAX_VALUE)
            oechem.OESetSDData(mol, "SSSrmsd", String.format("%.3f", rmsd));

        oechem.OEWriteMolecule(ofs, mol);
        mol.Clear();
    }

    ifs.close();
    ofs.close();

    mol.delete();
    ss.delete();
}

From source file:com.github.braully.graph.UtilResult.java

public static void main(String... args) throws Exception {
    Options options = new Options();

    Option input = new Option("i", "input", true, "input file path");
    input.setRequired(false);
    options.addOption(input);//from  w  w w. j  a  v  a 2 s  .  com

    Option verb = new Option("v", "verbose", false, "verbose process");
    input.setRequired(false);
    options.addOption(verb);

    Option output = new Option("o", "output", true, "output file");
    output.setRequired(false);
    options.addOption(output);

    CommandLineParser parser = new DefaultParser();
    HelpFormatter formatter = new HelpFormatter();
    CommandLine cmd;

    try {
        cmd = parser.parse(options, args);
    } catch (ParseException e) {
        System.out.println(e.getMessage());
        formatter.printHelp("UtilResult", options);

        System.exit(1);
        return;
    }

    String inputFilePath = cmd.getOptionValue("input");
    if (inputFilePath == null) {
        inputFilePath = "/home/strike/grafos-para-processar/mft2/resultado.txt";
    }
    if (inputFilePath != null) {
        if (inputFilePath.toLowerCase().endsWith(".txt")) {
            processFileTxt(inputFilePath);
        } else if (inputFilePath.toLowerCase().endsWith(".json")) {
            processFileJson(inputFilePath);
        }
    }
}

From source file:com.versusoft.packages.jodl.gui.CommandLineGUI.java

public static void main(String args[]) throws SAXException, IOException {

    Handler fh = new FileHandler(LOG_FILENAME_PATTERN);
    fh.setFormatter(new SimpleFormatter());

    //removeAllLoggersHandlers(Logger.getLogger(""));
    Logger.getLogger("").addHandler(fh);
    Logger.getLogger("").setLevel(Level.FINEST);

    Options options = new Options();

    Option option1 = new Option("in", "ODT file (required)");
    option1.setRequired(true);
    option1.setArgs(1);/*from   w ww.ja  v a  2 s  . c o  m*/

    Option option2 = new Option("out", "Output file (required)");
    option2.setRequired(false);
    option2.setArgs(1);

    Option option3 = new Option("pic", "extract pics");
    option3.setRequired(false);
    option3.setArgs(1);

    Option option4 = new Option("page", "enable pagination processing");
    option4.setRequired(false);
    option4.setArgs(0);

    options.addOption(option1);
    options.addOption(option2);
    options.addOption(option3);
    options.addOption(option4);

    CommandLineParser parser = new BasicParser();
    CommandLine cmd = null;

    try {
        cmd = parser.parse(options, args);
    } catch (ParseException e) {
        printHelp();
        return;
    }

    if (cmd.hasOption("help")) {
        printHelp();
        return;
    }

    File outFile = new File(cmd.getOptionValue("out"));

    OdtUtils utils = new OdtUtils();

    utils.open(cmd.getOptionValue("in"));
    //utils.correctionStep();
    utils.saveXML(outFile.getAbsolutePath());

    try {

        if (cmd.hasOption("page")) {
            OdtUtils.paginationProcessing(outFile.getAbsolutePath());
        }

        OdtUtils.correctionProcessing(outFile.getAbsolutePath());

    } catch (ParserConfigurationException ex) {
        logger.log(Level.SEVERE, null, ex);
    } catch (SAXException ex) {
        logger.log(Level.SEVERE, null, ex);
    } catch (IOException ex) {
        logger.log(Level.SEVERE, null, ex);
    } catch (TransformerConfigurationException ex) {
        logger.log(Level.SEVERE, null, ex);
    } catch (TransformerException ex) {
        logger.log(Level.SEVERE, null, ex);
    }

    if (cmd.hasOption("pic")) {

        String imageDir = cmd.getOptionValue("pic");
        if (!imageDir.endsWith("/")) {
            imageDir += "/";
        }

        try {

            String basedir = new File(cmd.getOptionValue("out")).getParent().toString()
                    + System.getProperty("file.separator");
            OdtUtils.extractAndNormalizeEmbedPictures(cmd.getOptionValue("out"), cmd.getOptionValue("in"),
                    basedir, imageDir);
        } catch (SAXException ex) {
            logger.log(Level.SEVERE, null, ex);
        } catch (ParserConfigurationException ex) {
            logger.log(Level.SEVERE, null, ex);
        } catch (TransformerConfigurationException ex) {
            logger.log(Level.SEVERE, null, ex);
        } catch (TransformerException ex) {
            logger.log(Level.SEVERE, null, ex);
        }
    }

}

From source file:fr.inria.atlanmod.kyanos.benchmarks.XmiTraverser.java

public static void main(String[] args) {
    Options options = new Options();

    Option inputOpt = OptionBuilder.create(IN);
    inputOpt.setArgName("INPUT");
    inputOpt.setDescription("Input model");
    inputOpt.setArgs(1);/*from   w  w  w.  jav  a2 s .c o  m*/
    inputOpt.setRequired(true);

    Option inClassOpt = OptionBuilder.create(EPACKAGE_CLASS);
    inClassOpt.setArgName("CLASS");
    inClassOpt.setDescription("FQN of EPackage implementation class");
    inClassOpt.setArgs(1);
    inClassOpt.setRequired(true);

    options.addOption(inputOpt);
    options.addOption(inClassOpt);

    CommandLineParser parser = new PosixParser();

    try {
        CommandLine commandLine = parser.parse(options, args);

        URI uri = URI.createFileURI(commandLine.getOptionValue(IN));

        Class<?> inClazz = XmiTraverser.class.getClassLoader()
                .loadClass(commandLine.getOptionValue(EPACKAGE_CLASS));
        inClazz.getMethod("init").invoke(null);

        ResourceSet resourceSet = new ResourceSetImpl();
        resourceSet.getResourceFactoryRegistry().getExtensionToFactoryMap().put("xmi",
                new XMIResourceFactoryImpl());
        resourceSet.getResourceFactoryRegistry().getExtensionToFactoryMap().put("zxmi",
                new XMIResourceFactoryImpl());

        Resource resource = resourceSet.createResource(uri);

        Map<String, Object> loadOpts = new HashMap<String, Object>();
        resource.load(loadOpts);

        LOG.log(Level.INFO, "Start counting");
        int count = 0;
        long begin = System.currentTimeMillis();
        for (Iterator<EObject> iterator = resource.getAllContents(); iterator.hasNext(); iterator
                .next(), count++)
            ;
        long end = System.currentTimeMillis();
        LOG.log(Level.INFO, "End counting");
        LOG.log(Level.INFO, MessageFormat.format("Resource {0} contains {1} elements", uri, count));
        LOG.log(Level.INFO, MessageFormat.format("Time spent: {0}", MessageUtil.formatMillis(end - begin)));

        resource.unload();

    } catch (ParseException e) {
        MessageUtil.showError(e.toString());
        MessageUtil.showError("Current arguments: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp("java -jar <this-file.jar>", options, true);
    } catch (Throwable e) {
        MessageUtil.showError(e.toString());
    }
}

From source file:com.genentech.retrival.tabExport.TABExporter.java

public static void main(String[] args) throws ParseException, JDOMException, IOException {
    long start = System.currentTimeMillis();
    int nStruct = 0;

    // create command line Options object
    Options options = new Options();
    Option opt = new Option("sqlFile", true, "sql-xml file");
    opt.setRequired(true);
    options.addOption(opt);/* w  w  w.  j  a  v  a2 s  .  c  om*/

    opt = new Option("sqlName", true, "name of SQL element in xml file");
    opt.setRequired(true);
    options.addOption(opt);

    opt = new Option("o", true, "output file");
    opt.setRequired(false);
    options.addOption(opt);

    opt = new Option("newLineReplacement", true,
            "If given newlines in fields will be replaced by this string.");
    options.addOption(opt);

    opt = new Option("noHeader", false, "Do not output header line");
    options.addOption(opt);

    CommandLineParser parser = new BasicParser();
    CommandLine cmd = null;
    try {
        cmd = parser.parse(options, args);
    } catch (Exception e) {
        System.err.println(e.getMessage());
        exitWithHelp(options);
    }
    args = cmd.getArgs();

    String outFile = cmd.getOptionValue("o");
    String sqlFile = cmd.getOptionValue("sqlFile");
    String sqlName = cmd.getOptionValue("sqlName");
    String newLineReplacement = cmd.getOptionValue("newLineReplacement");

    args = cmd.getArgs();

    try {
        PrintStream out = System.out;
        if (outFile != null)
            out = new PrintStream(outFile);

        SQLStatement stmt = SQLStatement.createFromFile(new File(sqlFile), sqlName);
        Object[] sqlArgs = args;
        if (stmt.getParamTypes().length != args.length) {
            System.err.printf(
                    "\nWarining sql statement needs %d parameters but got only %d. Filling up with NULLs.\n",
                    stmt.getParamTypes().length, args.length);
            sqlArgs = new Object[stmt.getParamTypes().length];
            System.arraycopy(args, 0, sqlArgs, 0, args.length);
        }

        Selecter sel = Selecter.factory(stmt);
        if (!sel.select(sqlArgs)) {
            System.err.println("No rows returned!");
            System.exit(0);
        }

        String[] fieldNames = sel.getFieldNames();
        if (fieldNames.length == 0) {
            System.err.println("Query did not return any columns");
            exitWithHelp(options);
        }

        if (!cmd.hasOption("noHeader")) {
            StringBuilder sb = new StringBuilder(200);
            for (String f : fieldNames)
                sb.append(f).append('\t');
            if (sb.length() > 1)
                sb.setLength(sb.length() - 1); // chop last \t
            String header = sb.toString();

            out.println(header);
        }

        StringBuilder sb = new StringBuilder(200);
        while (sel.hasNext()) {
            Record sqlRec = sel.next();
            sb.setLength(0);

            for (int i = 0; i < fieldNames.length; i++) {
                String fld = sqlRec.getStrg(i);
                if (newLineReplacement != null)
                    fld = NEWLinePattern.matcher(fld).replaceAll(newLineReplacement);

                sb.append(fld).append('\t');
            }

            if (sb.length() > 1)
                sb.setLength(sb.length() - 1); // chop last \t
            String row = sb.toString();

            out.println(row);

            nStruct++;
        }

    } catch (Exception e) {
        throw new Error(e);
    } finally {
        System.err.printf("TABExporter: Exported %d records in %dsec\n", nStruct,
                (System.currentTimeMillis() - start) / 1000);
    }
}

From source file:de.binfalse.jatter.App.java

/**
 * Run jatter's main.// w w  w  . j  a  v a  2  s.c om
 *
 * @param args
 *          the arguments
 * @throws Exception
 *           the exception
 */
public static void main(String[] args) throws Exception {
    Options options = new Options();

    Option conf = new Option("c", "config", true, "config file path");
    conf.setRequired(false);
    options.addOption(conf);

    Option t = new Option("t", "template", false, "show a config template");
    t.setRequired(false);
    options.addOption(t);

    Option v = new Option("v", "verbose", false, "print information messages");
    v.setRequired(false);
    options.addOption(v);

    Option d = new Option("d", "debug", false, "print debugging messages incl stack traces");
    d.setRequired(false);
    options.addOption(d);

    Option h = new Option("h", "help", false, "show help");
    h.setRequired(false);
    options.addOption(h);

    CommandLineParser parser = new DefaultParser();
    CommandLine cmd;

    try {
        cmd = parser.parse(options, args);
        if (cmd.hasOption("h"))
            throw new RuntimeException("showing the help page");
    } catch (Exception e) {
        help(options, e.getMessage());
        return;
    }

    if (cmd.hasOption("t")) {
        System.out.println();
        BufferedReader br = new BufferedReader(new InputStreamReader(
                App.class.getClassLoader().getResourceAsStream("config.properties.template")));
        while (br.ready())
            System.out.println(br.readLine());
        br.close();
        System.exit(0);
    }

    if (cmd.hasOption("v"))
        LOGGER.setMinLevel(LOGGER.INFO);

    if (cmd.hasOption("d")) {
        LOGGER.setMinLevel(LOGGER.DEBUG);
        LOGGER.setLogStackTrace(true);
    }

    if (!cmd.hasOption("c"))
        help(options, "a config file is required for running jatter");

    startJatter(cmd.getOptionValue("c"));
}

From source file:com.fiveclouds.jasper.JasperRunner.java

public static void main(String[] args) {

    // Set-up the options for the utility
    Options options = new Options();
    Option report = new Option("report", true, "jasper report to run (i.e. /path/to/report.jrxml)");
    options.addOption(report);// w  ww . ja  v a  2  s  . c  om

    Option driver = new Option("driver", true, "the jdbc driver class (i.e. com.mysql.jdbc.Driver)");
    driver.setRequired(true);
    options.addOption(driver);

    options.addOption("jdbcurl", true, "database jdbc url (i.e. jdbc:mysql://localhost:3306/database)");
    options.addOption("excel", true, "Will override the PDF default and export to Microsoft Excel");
    options.addOption("username", true, "database username");
    options.addOption("password", true, "database password");
    options.addOption("output", true, "the output filename (i.e. path/to/report.pdf");
    options.addOption("help", false, "print this message");

    Option propertyOption = OptionBuilder.withArgName("property=value").hasArgs(2).withValueSeparator()
            .withDescription("use value as report property").create("D");

    options.addOption(propertyOption);

    // Parse the options and build the report
    CommandLineParser parser = new PosixParser();
    try {
        CommandLine cmd = parser.parse(options, args);

        if (cmd.hasOption("help")) {
            HelpFormatter formatter = new HelpFormatter();
            formatter.printHelp("jasper-runner", options);
        } else {

            System.out.println("Building report " + cmd.getOptionValue("report"));
            try {
                Class.forName(cmd.getOptionValue("driver"));
                Connection connection = DriverManager.getConnection(cmd.getOptionValue("jdbcurl"),
                        cmd.getOptionValue("username"), cmd.getOptionValue("password"));
                System.out.println("Connected to " + cmd.getOptionValue("jdbcurl"));
                JasperReport jasperReport = JasperCompileManager.compileReport(cmd.getOptionValue("report"));

                JRPdfExporter pdfExporter = new JRPdfExporter();

                Properties properties = cmd.getOptionProperties("D");
                Map<String, Object> parameters = new HashMap<String, Object>();

                Map<String, JRParameter> reportParameters = new HashMap<String, JRParameter>();

                for (JRParameter param : jasperReport.getParameters()) {
                    reportParameters.put(param.getName(), param);
                }

                for (Object propertyKey : properties.keySet()) {
                    String parameterName = String.valueOf(propertyKey);
                    String parameterValue = String.valueOf(properties.get(propertyKey));
                    JRParameter reportParam = reportParameters.get(parameterName);

                    if (reportParam != null) {
                        if (reportParam.getValueClass().equals(String.class)) {
                            System.out.println(
                                    "Property " + parameterName + " set to String = " + parameterValue);
                            parameters.put(parameterName, parameterValue);
                        } else if (reportParam.getValueClass().equals(Integer.class)) {
                            System.out.println(
                                    "Property " + parameterName + " set to Integer = " + parameterValue);
                            parameters.put(parameterName, Integer.parseInt(parameterValue));
                        } else {
                            System.err.print("Unsupported type for property " + parameterName);
                            System.exit(1);

                        }
                    } else {
                        System.out.println("Property " + parameterName + " not found in the report! IGNORING");

                    }
                }

                JasperPrint print = JasperFillManager.fillReport(jasperReport, parameters, connection);

                pdfExporter.setParameter(JRExporterParameter.JASPER_PRINT, print);
                pdfExporter.setParameter(JRExporterParameter.OUTPUT_FILE_NAME, cmd.getOptionValue("output"));
                System.out.println("Exporting report to " + cmd.getOptionValue("output"));
                pdfExporter.exportReport();
            } catch (JRException e) {
                System.err.print("Unable to parse report file (" + cmd.getOptionValue("r") + ")");
                e.printStackTrace();
                System.exit(1);
            } catch (ClassNotFoundException e) {
                System.err.print("Unable to find the database driver,  is it on the classpath?");
                e.printStackTrace();
                System.exit(1);
            } catch (SQLException e) {
                System.err.print("An SQL exception has occurred (" + e.getMessage() + ")");
                e.printStackTrace();
                System.exit(1);
            }
        }
    } catch (ParseException e) {
        System.err.print("Unable to parse command line options (" + e.getMessage() + ")");
        System.exit(1);
    }
}