Example usage for org.apache.commons.cli OptionBuilder isRequired

Introduction

In this page you can find the example usage for org.apache.commons.cli OptionBuilder isRequired.

Prototype

public static OptionBuilder isRequired() 

Source Link

Document

The next Option created will be required.

Usage

From source file:de.clusteval.data.dataset.generator.HyperCubeCornersDataSetGenerator.java

@Override
protected Options getOptions() {
    Options options = new Options();

    OptionBuilder.withArgName("n");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();//from   w ww .j  a  v a  2  s .c  om
    OptionBuilder.withDescription("The number of points.");
    Option option = OptionBuilder.create("n");
    options.addOption(option);

    OptionBuilder.withArgName("d");
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The number of dimensions.");
    option = OptionBuilder.create("d");
    options.addOption(option);

    OptionBuilder.withArgName("sd");
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The standard deviation.");
    option = OptionBuilder.create("sd");
    options.addOption(option);

    return options;
}

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From source file:de.clusteval.data.dataset.generator.QiuJoeCovarianceClusterDataSetGenerator.java

@Override
protected Options getOptions() {
    Options options = new Options();

    OptionBuilder.withArgName("n");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();/* www .ja v a  2  s.  co  m*/
    OptionBuilder.withDescription("The number of points.");
    Option option = OptionBuilder.create("n");
    options.addOption(option);

    OptionBuilder.withDescription("Make the cluster sizes different.");
    option = OptionBuilder.create("sizes");
    options.addOption(option);

    OptionBuilder.withArgName("k");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The number of clusters.");
    option = OptionBuilder.create("k");
    options.addOption(option);

    OptionBuilder.withArgName("noisyfeatures");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The number of noisy features.");
    option = OptionBuilder.create("dn");
    options.addOption(option);

    OptionBuilder.withArgName("features");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The number of non-noisy (clustered/separated) features.");
    option = OptionBuilder.create("d");
    options.addOption(option);

    OptionBuilder.withArgName("clusterSeparation");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The cluster separation (between -1.0 and +1.0).");
    option = OptionBuilder.create("s");
    options.addOption(option);

    return options;
}

---

From source file:jurbano.melodyshape.ui.ConsoleUIObserver.java

/**
 * Constructs a new {@code ConsoleUIObserver} according to some command line
 * arguments./*from w  w w . j a va 2 s . c  om*/
 * 
 * @param args
 *            the command line arguments to configure the algorithm.
 */
@SuppressWarnings("static-access")
public ConsoleUIObserver(String[] args) {
    this.args = args;

    this.qOpt = null;
    this.cOpt = null;
    this.aOpt = null;
    this.lOpt = false;
    this.hOpt = false;
    this.tOpt = Runtime.getRuntime().availableProcessors();
    this.kOpt = Integer.MAX_VALUE;
    this.vOpt = 0;

    this.options = new Options();
    // required arguments
    this.options.addOption(OptionBuilder.isRequired().hasArg().withArgName("file/dir")
            .withDescription("path to the query melody or melodies.").create("q"));
    this.options.addOption(OptionBuilder.isRequired().hasArg().withArgName("dir")
            .withDescription("path to the collection of documents.").create("c"));
    this.options.addOption(OptionBuilder.isRequired().hasArg().withArgName("name")
            .withDescription("algorithm to run:" + "\n- 2010-domain, 2010-pitchderiv, 2010-shape"
                    + "\n- 2011-shape, 2011-pitch, 2011-time"
                    + "\n- 2012-shapeh, 2012-shapel, 2012-shapeg, 2012-time, 2012-shapetime"
                    + "\n- 2013-shapeh, 2013-time, 2013-shapetime"
                    + "\n- 2014-shapeh, 2014-time, 2014-shapetime"
                    + "\n- 2015-shapeh, 2015-time, 2015-shapetime")
            .create("a"));
    // optional arguments
    this.options.addOption(OptionBuilder
            .withDescription("show results in a single line (omits similarity scores).").create("l"));
    this.options.addOption(OptionBuilder.hasArg().withArgName("num")
            .withDescription("run a fixed number of threads.").create("t"));
    this.options.addOption(OptionBuilder.hasArg().withArgName("cutoff")
            .withDescription("number of documents to retrieve.").create("k"));
    this.options.addOption(OptionBuilder.withDescription("verbose, to stderr.").create("v"));
    this.options.addOption(OptionBuilder.withDescription("verbose a lot, to stderr.").create("vv"));
    this.options.addOption(OptionBuilder.withDescription("show this help message.").create("h"));
    this.options.addOption(OptionBuilder.withDescription("run with graphical user interface.").create("gui"));
}

---

From source file:de.wpsverlinden.ufilan.Ufilan.java

private CommandLine initCli() throws ParseException {
    options = new Options();
    options.addOption(OptionBuilder.isRequired().hasArg()
            .withDescription("action to perform (histogram_text, histogram_img, map, type, size, entropy)")
            .create("a"));
    options.addOption(OptionBuilder.withArgName("file").hasArg()
            .withDescription("path of the input file. If null, stdin is used").create("if"));
    options.addOption(OptionBuilder.withArgName("file").hasArg()
            .withDescription("path of the output file. If null, stdout is used").create("of"));
    options.addOption(OptionBuilder.withArgName("byte").hasArg()
            .withDescription("chunk size in bytes used for input parsing. Default value: 1 byte").create("c"));
    options.addOption(OptionBuilder.withArgName("byte").hasArg()
            .withDescription("skips the given number of bytes start parsing. Default value: 0 byte")
            .create("s"));

    CommandLineParser parser = new PosixParser();
    return parser.parse(options, args);
}

---

From source file:be.svlandeg.diffany.console.DiffanyOptions.java

/**
 * Define the options specifying necessary arguments for the Diffany algorithms
 *//*from w  w w  .  java  2s  .c  o  m*/
private Set<Option> getAllParameters() {
    Set<Option> allParameters = new HashSet<Option>();

    OptionBuilder.withArgName("dir");
    OptionBuilder.withLongOpt("inputDir");
    OptionBuilder.hasArgs(1);
    OptionBuilder.isRequired();
    OptionBuilder
            .withDescription("the input directory containing the reference and condition-specific networks");
    allParameters.add(OptionBuilder.create(inputShort));

    OptionBuilder.withArgName("dir");
    OptionBuilder.withLongOpt("outputDir");
    OptionBuilder.hasArgs(1);
    OptionBuilder.isRequired();
    OptionBuilder.withDescription(
            "the output directory which will contain the generated differential/consensus networks");
    allParameters.add(OptionBuilder.create(outputShort));

    String defaultRunDiffString = defaultRunDiff ? "yes" : "no";
    OptionBuilder.withLongOpt("differential");
    OptionBuilder.hasArgs(1);
    OptionBuilder.withDescription("whether or not to calculate differential networks: yes or no (default="
            + defaultRunDiffString + ")");
    allParameters.add(OptionBuilder.create(runDiff));

    String defaultRunConsString = defaultRunCons ? "yes" : "no";
    ;
    OptionBuilder.withLongOpt("consensus");
    OptionBuilder.hasArgs(1);
    OptionBuilder.withDescription(
            "whether or not to calculate consensus networks: yes or no (default=" + defaultRunConsString + ")");
    allParameters.add(OptionBuilder.create(runCons));

    OptionBuilder.withLongOpt("outputID");
    OptionBuilder.hasArgs(1);
    OptionBuilder.withDescription("the first ID that will be used for the generated networks");
    allParameters.add(OptionBuilder.create(nextID));

    OptionBuilder.withLongOpt("confidence");
    OptionBuilder.hasArgs(1);
    OptionBuilder.withDescription(
            "the minimum confidence threshold for output edges, as an integer or double (default=0.0)");
    allParameters.add(OptionBuilder.create(cutoffShort));

    String defaultMinOperatorString = defaultMinOperator ? "min" : "max";
    OptionBuilder.withLongOpt("operator");
    OptionBuilder.hasArgs(1);
    OptionBuilder.withDescription("the operator used to create consensus edges: min or max (default="
            + defaultMinOperatorString + ")");
    allParameters.add(OptionBuilder.create(operatorShort));

    String defaultModeString = defaultModePairwise ? "pairwise" : "all";
    OptionBuilder.withLongOpt("mode");
    OptionBuilder.hasArgs(1);
    OptionBuilder
            .withDescription("the mode of comparison: pairwise or all (default=" + defaultModeString + ")");
    allParameters.add(OptionBuilder.create(modeShort));

    String defaultHeaderString = defaultReadHeader ? "yes" : "no";
    OptionBuilder.withLongOpt("skipHeader");
    OptionBuilder.hasArgs(1);
    OptionBuilder.withDescription(
            "whether or not to skip the first line (header) in the network .txt files (default="
                    + defaultHeaderString + ")");
    allParameters.add(OptionBuilder.create(headerShort));

    return allParameters;
}

---

From source file:eu.crydee.alignment.aligner.MetricsP.java

static private void parseArguments(String[] args) {
    Options shortCircuitOptions = new Options();
    shortCircuitOptions// w w w .j  ava 2 s .  c o  m
            .addOption(OptionBuilder.withLongOpt("help").withDescription("Print this message.").create('h'));
    shortCircuitOptions
            .addOption(OptionBuilder.withLongOpt("version").withDescription("Print the version.").create('v'));
    Options options = new Options();
    options.addOption(OptionBuilder.isRequired().withLongOpt("corpus").hasArg().withArgName("folder-path")
            .withDescription("Path to the britannica corpus.").create('c'));
    options.addOption(OptionBuilder.isRequired().withLongOpt("whitelist-path").hasArg().withArgName("file-path")
            .withDescription("Path to the whitelist of files to test. One " + "city per line.").create('w'));
    try {
        CommandLineParser parser = new PosixParser();
        CommandLine cmd = parser.parse(shortCircuitOptions, args, true);
        if (cmd.hasOption('h')) {
            HelpFormatter formatter = new HelpFormatter();
            formatter.printHelp("aligner", options, true);
            System.exit(0);
        }
        if (cmd.hasOption('v')) {
            System.out.println("aligner v1.0.0-SNAPSHOT");
            System.exit(0);
        }
        cmd = parser.parse(options, args);
        WHITELIST_FILE_PATH = cmd.getOptionValue('w');
        CORPUS_PATH = cmd.getOptionValue('c');
    } catch (ParseException ex) {
        System.err.println("The CLI args could not be parsed.");
        System.err.println("The error message was:");
        System.err.println(" " + ex.getMessage());
        System.exit(1);
    }
}

---

From source file:com.ehi.carshare.Main.java

@SuppressWarnings("static-access")
private static Option buildOption(String argName, String longOpt, String description) {
    return OptionBuilder.isRequired().hasArg(true).withLongOpt(longOpt).withDescription(description)
            .create(argName);/*from  w ww .  ja v a 2  s.  c  o  m*/
}

---

From source file:eu.crydee.alignment.aligner.BritannicaP.java

static private void parseArguments(String[] args) {
    Options shortCircuitOptions = new Options();
    shortCircuitOptions//from  w ww. j a  v  a 2 s.c  o  m
            .addOption(OptionBuilder.withLongOpt("help").withDescription("Print this message.").create('h'));
    shortCircuitOptions
            .addOption(OptionBuilder.withLongOpt("version").withDescription("Print the version.").create('v'));
    Options options = new Options();
    options.addOption(OptionBuilder.isRequired().withLongOpt("corpus-path").hasArg().withArgName("folder-path")
            .withDescription("Path to the Britannica corpus.").create('c'));
    options.addOption(
            OptionBuilder.isRequired().withLongOpt("annotations-path").hasArg().withArgName("folder-path")
                    .withDescription("Path to the test folder of the annotations.").create('a'));
    try {
        CommandLineParser parser = new PosixParser();
        CommandLine cmd = parser.parse(shortCircuitOptions, args, true);
        if (cmd.hasOption('h')) {
            HelpFormatter formatter = new HelpFormatter();
            formatter.printHelp("britannica", options, true);
            System.exit(0);
        }
        if (cmd.hasOption('v')) {
            System.out.println("britannica-aligner v1.0.0-SNAPSHOT");
            System.exit(0);
        }
        cmd = parser.parse(options, args);
        CORPUS = cmd.getOptionValue('c');
        ANNS = cmd.getOptionValue('a');
    } catch (ParseException ex) {
        System.err.println("The CLI args could not be parsed.");
        System.err.println("The error message was:");
        System.err.println(" " + ex.getMessage());
        System.exit(1);
    }
}

---

From source file:de.clusteval.data.randomizer.DataRandomizer.java

/**
 * Adds the default options of dataset generators to the given Options
 * attribute//w ww  .  j  ava 2s .  co m
 * 
 * @param options
 *            The existing Options attribute, holding already the options of
 *            the actual generator implementation.
 */
private void addDefaultOptions(final Options options) {
    OptionBuilder.withArgName("dataConfig");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The name of the data configuration to randomize");
    Option option = OptionBuilder.create("dataConfig");
    options.addOption(option);

}

---

From source file:de.clusteval.data.dataset.generator.DataSetGenerator.java

/**
 * Adds the default options of dataset generators to the given Options
 * attribute// w  ww .jav a  2s.  co m
 * 
 * @param options
 *            The existing Options attribute, holding already the options of
 *            the actual generator implementation.
 */
private void addDefaultOptions(final Options options) {
    OptionBuilder.withArgName("folderName");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The name of the folder to store this dataset in.");
    Option option = OptionBuilder.create("folderName");
    options.addOption(option);

    OptionBuilder.withArgName("fileName");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The name of the dataset file to generate.");
    option = OptionBuilder.create("fileName");
    options.addOption(option);

    OptionBuilder.withArgName("alias");
    OptionBuilder.isRequired();
    OptionBuilder.hasArg();
    OptionBuilder.withDescription("The alias of the data set.");
    option = OptionBuilder.create("alias");
    options.addOption(option);
}

---

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