List of usage examples for org.apache.commons.cli OptionBuilder withDescription
public static OptionBuilder withDescription(String newDescription)
From source file:org.dcm4che2.tool.dcmwado.DcmWado.java
private static CommandLine parse(String[] args) { Options opts = new Options(); OptionBuilder.withArgName("suid:Suid:iuid"); OptionBuilder.hasArgs(3);//from w w w . j av a2 s.com OptionBuilder.withValueSeparator(':'); OptionBuilder.withDescription( "Retrieve object with given Study " + "Instance UID, Series Instance UID and SOP Instance UID."); opts.addOption(OptionBuilder.create("uid")); OptionBuilder.withArgName("Suid:iuid"); OptionBuilder.hasArgs(2); OptionBuilder.withValueSeparator(':'); OptionBuilder.withDescription("Series Instance UID and SOP Instance UID " + "of the presentation state storage object to be applied to the " + "image."); opts.addOption(OptionBuilder.create("pr")); opts.addOption("dcm", false, "Request DICOM object. (MIME type: application/dicom)"); opts.addOption("jpeg", false, "Request JPEG image. (MIME type: image/jpeg)"); opts.addOption("gif", false, "Request GIF image. (MIME type: image/gif)"); opts.addOption("png", false, "Request PNG image. (MIME type: image/png)"); opts.addOption("jp2", false, "Request JPEG 2000 image. (MIME type: image/jp2)"); opts.addOption("mpeg", false, "Request MPEG video. (MIME type: video/mpeg)"); opts.addOption("txt", false, "Request plain text document. (MIME type: text/plain)"); opts.addOption("html", false, "Request HTML document. (MIME type: text/html)"); opts.addOption("xml", false, "Request XML document. (MIME type: text/xml)"); opts.addOption("rtf", false, "Request RTF document. (MIME type: text/rtf)"); opts.addOption("pdf", false, "Request PDF document. (MIME type: application/pdf)"); opts.addOption("cda1", false, "Request CDA Level 1 document. " + "(MIME type: application/x-hl7-cda-level-one+xml)"); OptionBuilder.withArgName("type"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Request document with the specified MIME type." + "Alternative MIME types can be specified by additional -mime options."); opts.addOption(OptionBuilder.create("mime")); OptionBuilder.withArgName("uid"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Returned object shall be encoded with " + "the specified Transfer Syntax. Alternative Transfer Syntaxes " + "can be specified by additional -ts options."); opts.addOption(OptionBuilder.create("ts")); OptionBuilder.withArgName("name"); OptionBuilder.hasArg(); OptionBuilder.withDescription( "Returned object shall be encoded with " + "specified Character set. Alternative Character sets " + "can be specified by additional -charset options."); opts.addOption(OptionBuilder.create("charset")); opts.addOption("anonymize", false, "Remove all patient identification" + "information from returned DICOM Object"); OptionBuilder.withArgName("type"); OptionBuilder.hasArg(); OptionBuilder.withDescription( "Burn in patient information" + "(-annotation=patient) and/or technique information " + "(-annotation=technique) in returned pixel data."); opts.addOption(OptionBuilder.create("annotation")); OptionBuilder.withArgName("num"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Maximal number of pixel rows in returned image."); opts.addOption(OptionBuilder.create("rows")); OptionBuilder.withArgName("num"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Maximal number of pixel columns in returned image."); opts.addOption(OptionBuilder.create("columns")); OptionBuilder.withArgName("num"); OptionBuilder.hasArg(); OptionBuilder .withDescription("Return single frame with that number " + "within a multi-frame image object."); opts.addOption(OptionBuilder.create("frame")); OptionBuilder.withArgName("x1:y1:x2:y2"); OptionBuilder.hasArgs(4); OptionBuilder.withValueSeparator(':'); OptionBuilder.withDescription("Return rectangular region of image " + "matrix specified by top left (x1,y1) and bottom right (x2,y2) " + "corner in relative coordinates within the range 0.0 to 1.0."); opts.addOption(OptionBuilder.create("window")); OptionBuilder.withArgName("center/width"); OptionBuilder.hasArgs(2); OptionBuilder.withValueSeparator('/'); OptionBuilder .withDescription("Specifies center and width of the " + "VOI window to be applied to the image."); opts.addOption(OptionBuilder.create("window")); OptionBuilder.withArgName("num"); OptionBuilder.hasArg(); OptionBuilder.withDescription( "Quality of the image to be returned " + "within the range 1 to 100, 100 being the best quality."); opts.addOption(OptionBuilder.create("quality")); OptionBuilder.withArgName("path"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Directory to store retrieved objects, " + "working directory by default"); opts.addOption(OptionBuilder.create("dir")); OptionBuilder.withArgName("dirpath"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Directory to store retrieved objects, " + "working directory by default"); opts.addOption(OptionBuilder.create("dir")); OptionBuilder.withArgName("file"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Store retrieved object to specified file, " + "use SOP Instance UID + format specific file extension as " + "file name by default."); opts.addOption(OptionBuilder.create("o")); opts.addOption("nostore", false, "Do not store retrieved objects to files."); opts.addOption("nokeepalive", false, "Close TCP connection after each response."); opts.addOption("noredirect", false, "Disable HTTP redirects."); OptionBuilder.withArgName("kB"); OptionBuilder.hasArg(); OptionBuilder.withDescription( "Size of byte buffer in KB " + "used for copying the retrieved object to disk, 8 KB by default."); opts.addOption(OptionBuilder.create("buffersize")); opts.addOption("h", "help", false, "print this message"); opts.addOption("V", "version", false, "print the version information and exit"); CommandLine cl = null; try { cl = new GnuParser().parse(opts, args); } catch (MissingOptionException e) { exit("dcmwado: Missing required option " + e.getMessage()); throw new RuntimeException("unreachable"); } catch (ParseException e) { exit("dcmwado: " + e.getMessage()); throw new RuntimeException("unreachable"); } if (cl.hasOption('V')) { Package p = DcmWado.class.getPackage(); System.out.println("dcmwado v" + p.getImplementationVersion()); System.exit(0); } if (cl.hasOption('h') || cl.getArgList().isEmpty()) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp(USAGE, DESCRIPTION, opts, EXAMPLE); System.exit(0); } int narg = cl.getArgList().size(); if (narg == 0) exit("Missing url of WADO server"); if (narg == 1) { if (!cl.hasOption("uid")) { exit("You must either option -uid <uids> or <file>|<directory> specify"); } } else { if (cl.hasOption("uid")) { exit("You may not specify option -uid <uids> together with " + "<file>|<directory>."); } } return cl; }
From source file:org.dcm4che2.tool.jpg2dcm.Jpg2Dcm.java
private static CommandLine parse(String[] args) { Options opts = new Options(); OptionBuilder.withArgName("code"); OptionBuilder.hasArg();/*from w ww .ja va 2s . c o m*/ OptionBuilder.withDescription(OPT_CHARSET_DESC); OptionBuilder.withLongOpt(LONG_OPT_CHARSET); opts.addOption(OptionBuilder.create()); OptionBuilder.withArgName("file"); OptionBuilder.hasArg(); OptionBuilder.withDescription(OPT_AUGMENT_CONFIG_DESC); opts.addOption(OptionBuilder.create("c")); OptionBuilder.withArgName("file"); OptionBuilder.hasArg(); OptionBuilder.withDescription(OPT_REPLACE_CONFIG_DESC); opts.addOption(OptionBuilder.create("C")); OptionBuilder.withArgName("prefix"); OptionBuilder.hasArg(); OptionBuilder.withDescription(OPT_UID_PREFIX_DESC); OptionBuilder.withLongOpt(LONG_OPT_UID_PREFIX); opts.addOption(OptionBuilder.create()); OptionBuilder.withArgName("uid"); OptionBuilder.hasArg(); OptionBuilder.withDescription(OPT_TRANSFER_SYNTAX_DESC); OptionBuilder.withLongOpt(LONG_OPT_TRANSFER_SYNTAX); opts.addOption(OptionBuilder.create()); opts.addOption(null, LONG_OPT_MPEG, false, OPT_MPEG_DESC); opts.addOption(null, LONG_OPT_NO_APPN, false, OPT_NO_APPN_DESC); opts.addOption("h", "help", false, OPT_HELP_DESC); opts.addOption("V", "version", false, OPT_VERSION_DESC); CommandLine cl = null; try { cl = new PosixParser().parse(opts, args); } catch (ParseException e) { exit("jpg2dcm: " + e.getMessage()); throw new RuntimeException("unreachable"); } if (cl.hasOption('V')) { Package p = Jpg2Dcm.class.getPackage(); System.out.println("jpg2dcm v" + p.getImplementationVersion()); System.exit(0); } if (cl.hasOption('h') || cl.getArgList().size() != 2) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp(USAGE, DESCRIPTION, opts, EXAMPLE); System.exit(0); } return cl; }
From source file:org.dcm4che2.tool.pdf2dcm.Pdf2Dcm.java
private static CommandLine parse(String[] args) { Options opts = new Options(); OptionBuilder.withArgName("charset"); OptionBuilder.hasArg();// w w w . j av a 2 s. c o m OptionBuilder.withDescription("Specific Character Set, ISO_IR 100 by default"); opts.addOption(OptionBuilder.create("cs")); OptionBuilder.withArgName("size"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Buffer size used for copying PDF to DICOM file, 8192 by default"); opts.addOption(OptionBuilder.create("bs")); OptionBuilder.withArgName("file"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Configuration file specifying DICOM attribute values"); opts.addOption(OptionBuilder.create("c")); opts.addOption("ivrle", false, "use Implicit VR Little Endian instead " + "Explicit VR Little Endian Transfer Syntax for DICOM encoding."); opts.addOption("h", "help", false, "print this message"); OptionBuilder.withArgName("prefix"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Generate UIDs with given prefix," + "1.2.40.0.13.1.<host-ip> by default."); opts.addOption(OptionBuilder.create("uid")); opts.addOption("V", "version", false, "print the version information and exit"); CommandLine cl = null; try { cl = new GnuParser().parse(opts, args); } catch (ParseException e) { exit("pdf2dcm: " + e.getMessage()); throw new RuntimeException("unreachable"); } if (cl.hasOption('V')) { Package p = Pdf2Dcm.class.getPackage(); System.out.println("pdf2dcm v" + p.getImplementationVersion()); System.exit(0); } if (cl.hasOption('h') || cl.getArgList().size() != 2) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp(USAGE, DESCRIPTION, opts, EXAMPLE); System.exit(0); } return cl; }
From source file:org.dcm4che2.tool.txt2dcmsr.Txt2DcmSR.java
private static CommandLine parse(String[] args) { Options opts = new Options(); OptionBuilder.withArgName("charset"); OptionBuilder.hasArg();/*from w ww .jav a 2 s . c o m*/ OptionBuilder.withDescription("Specific Character Set, ISO_IR 100 by default"); opts.addOption(OptionBuilder.create("cs")); OptionBuilder.withArgName("file"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Configuration file specifying DICOM attribute values"); opts.addOption(OptionBuilder.create("c")); OptionBuilder.withArgName("prefix"); OptionBuilder.hasArg(); OptionBuilder.withDescription("Generate UIDs with given prefix," + "1.2.40.0.13.1.<host-ip> by default."); opts.addOption(OptionBuilder.create("uid")); opts.addOption("para", false, "Separate text in paragraphs according line delimiters"); opts.addOption("ivrle", false, "use Implicit VR Little Endian instead " + "Explicit VR Little Endian Transfer Syntax for DICOM encoding."); opts.addOption("h", "help", false, "print this message"); opts.addOption("V", "version", false, "print the version information and exit"); CommandLine cl = null; try { cl = new GnuParser().parse(opts, args); } catch (ParseException e) { exit("txt2dcmsr: " + e.getMessage()); throw new RuntimeException("unreachable"); } if (cl.hasOption('V')) { Package p = Txt2DcmSR.class.getPackage(); System.out.println("txt2dcmsr v" + p.getImplementationVersion()); System.exit(0); } if (cl.hasOption('h') || cl.getArgList().size() != 2) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp(USAGE, DESCRIPTION, opts, EXAMPLE); System.exit(0); } return cl; }
From source file:org.dcm4che3.tool.jpg2dcm.Jpg2Dcm.java
private static CommandLine parse(String[] args) { Options opts = new Options(); OptionBuilder.withArgName("code"); OptionBuilder.hasArg();/*from w ww . ja va 2s . c o m*/ OptionBuilder.withDescription(OPT_CHARSET_DESC); OptionBuilder.withLongOpt(LONG_OPT_CHARSET); opts.addOption(OptionBuilder.create()); OptionBuilder.withArgName("file"); OptionBuilder.hasArg(); OptionBuilder.withDescription(OPT_AUGMENT_CONFIG_DESC); opts.addOption(OptionBuilder.create("c")); OptionBuilder.withArgName("file"); OptionBuilder.hasArg(); OptionBuilder.withDescription(OPT_REPLACE_CONFIG_DESC); opts.addOption(OptionBuilder.create("C")); OptionBuilder.withArgName("prefix"); OptionBuilder.hasArg(); OptionBuilder.withDescription(OPT_UID_PREFIX_DESC); OptionBuilder.withLongOpt(LONG_OPT_UID_PREFIX); opts.addOption(OptionBuilder.create()); OptionBuilder.withArgName("uid"); OptionBuilder.hasArg(); OptionBuilder.withDescription(OPT_TRANSFER_SYNTAX_DESC); OptionBuilder.withLongOpt(LONG_OPT_TRANSFER_SYNTAX); opts.addOption(OptionBuilder.create()); opts.addOption(null, LONG_OPT_MPEG, false, OPT_MPEG_DESC); opts.addOption(null, LONG_OPT_NO_APPN, false, OPT_NO_APPN_DESC); opts.addOption("h", "help", false, OPT_HELP_DESC); opts.addOption("V", "version", false, OPT_VERSION_DESC); CommandLine cl = null; try { cl = new PosixParser().parse(opts, args); } catch (ParseException e) { exit("jpg2dcm: " + e.getMessage()); throw new RuntimeException("unreachable"); } if (cl.hasOption('V')) { Package p = Jpg2Dcm.class.getPackage(); LOG.info("jpg2dcm v" + p.getImplementationVersion()); System.exit(0); } if (cl.hasOption('h') || cl.getArgList().size() != 2) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp(USAGE, DESCRIPTION, opts, EXAMPLE); System.exit(0); } return cl; }
From source file:org.dspace.app.mediafilter.MediaFilterCLITool.java
public static void main(String[] argv) throws Exception { // set headless for non-gui workstations System.setProperty("java.awt.headless", "true"); // create an options object and populate it CommandLineParser parser = new PosixParser(); int status = 0; Options options = new Options(); options.addOption("v", "verbose", false, "print all extracted text and other details to STDOUT"); options.addOption("q", "quiet", false, "do not print anything except in the event of errors."); options.addOption("f", "force", false, "force all bitstreams to be processed"); options.addOption("i", "identifier", true, "ONLY process bitstreams belonging to identifier"); options.addOption("m", "maximum", true, "process no more than maximum items"); options.addOption("h", "help", false, "help"); //create a "plugin" option (to specify specific MediaFilter plugins to run) OptionBuilder.withLongOpt("plugins"); OptionBuilder.withValueSeparator(','); OptionBuilder.withDescription("ONLY run the specified Media Filter plugin(s)\n" + "listed from '" + MEDIA_FILTER_PLUGINS_KEY + "' in dspace.cfg.\n" + "Separate multiple with a comma (,)\n" + "(e.g. MediaFilterManager -p \n\"Word Text Extractor\",\"PDF Text Extractor\")"); Option pluginOption = OptionBuilder.create('p'); pluginOption.setArgs(Option.UNLIMITED_VALUES); //unlimited number of args options.addOption(pluginOption);//w ww . j a v a 2 s . c o m //create a "skip" option (to specify communities/collections/items to skip) OptionBuilder.withLongOpt("skip"); OptionBuilder.withValueSeparator(','); OptionBuilder.withDescription( "SKIP the bitstreams belonging to identifier\n" + "Separate multiple identifiers with a comma (,)\n" + "(e.g. MediaFilterManager -s \n 123456789/34,123456789/323)"); Option skipOption = OptionBuilder.create('s'); skipOption.setArgs(Option.UNLIMITED_VALUES); //unlimited number of args options.addOption(skipOption); boolean isVerbose = false; boolean isQuiet = false; boolean isForce = false; // default to not forced String identifier = null; // object scope limiter int max2Process = Integer.MAX_VALUE; Map<String, List<String>> filterFormats = new HashMap<>(); CommandLine line = null; try { line = parser.parse(options, argv); } catch (MissingArgumentException e) { System.out.println("ERROR: " + e.getMessage()); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(1); } if (line.hasOption('h')) { HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(0); } if (line.hasOption('v')) { isVerbose = true; } isQuiet = line.hasOption('q'); if (line.hasOption('f')) { isForce = true; } if (line.hasOption('i')) { identifier = line.getOptionValue('i'); } if (line.hasOption('m')) { max2Process = Integer.parseInt(line.getOptionValue('m')); if (max2Process <= 1) { System.out.println("Invalid maximum value '" + line.getOptionValue('m') + "' - ignoring"); max2Process = Integer.MAX_VALUE; } } String filterNames[] = null; if (line.hasOption('p')) { //specified which media filter plugins we are using filterNames = line.getOptionValues('p'); if (filterNames == null || filterNames.length == 0) { //display error, since no plugins specified System.err.println("\nERROR: -p (-plugin) option requires at least one plugin to be specified.\n" + "(e.g. MediaFilterManager -p \"Word Text Extractor\",\"PDF Text Extractor\")\n"); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(1); } } else { //retrieve list of all enabled media filter plugins! filterNames = DSpaceServicesFactory.getInstance().getConfigurationService() .getArrayProperty(MEDIA_FILTER_PLUGINS_KEY); } MediaFilterService mediaFilterService = MediaFilterServiceFactory.getInstance().getMediaFilterService(); mediaFilterService.setForce(isForce); mediaFilterService.setQuiet(isQuiet); mediaFilterService.setVerbose(isVerbose); mediaFilterService.setMax2Process(max2Process); //initialize an array of our enabled filters List<FormatFilter> filterList = new ArrayList<FormatFilter>(); //set up each filter for (int i = 0; i < filterNames.length; i++) { //get filter of this name & add to list of filters FormatFilter filter = (FormatFilter) CoreServiceFactory.getInstance().getPluginService() .getNamedPlugin(FormatFilter.class, filterNames[i]); if (filter == null) { System.err.println( "\nERROR: Unknown MediaFilter specified (either from command-line or in dspace.cfg): '" + filterNames[i] + "'"); System.exit(1); } else { filterList.add(filter); String filterClassName = filter.getClass().getName(); String pluginName = null; //If this filter is a SelfNamedPlugin, //then the input formats it accepts may differ for //each "named" plugin that it defines. //So, we have to look for every key that fits the //following format: filter.<class-name>.<plugin-name>.inputFormats if (SelfNamedPlugin.class.isAssignableFrom(filter.getClass())) { //Get the plugin instance name for this class pluginName = ((SelfNamedPlugin) filter).getPluginInstanceName(); } //Retrieve our list of supported formats from dspace.cfg //For SelfNamedPlugins, format of key is: // filter.<class-name>.<plugin-name>.inputFormats //For other MediaFilters, format of key is: // filter.<class-name>.inputFormats String[] formats = DSpaceServicesFactory.getInstance().getConfigurationService() .getArrayProperty(FILTER_PREFIX + "." + filterClassName + (pluginName != null ? "." + pluginName : "") + "." + INPUT_FORMATS_SUFFIX); //add to internal map of filters to supported formats if (ArrayUtils.isNotEmpty(formats)) { //For SelfNamedPlugins, map key is: // <class-name><separator><plugin-name> //For other MediaFilters, map key is just: // <class-name> filterFormats.put(filterClassName + (pluginName != null ? MediaFilterService.FILTER_PLUGIN_SEPARATOR + pluginName : ""), Arrays.asList(formats)); } } //end if filter!=null } //end for //If verbose, print out loaded mediafilter info if (isVerbose) { System.out.println("The following MediaFilters are enabled: "); Iterator<String> i = filterFormats.keySet().iterator(); while (i.hasNext()) { String filterName = i.next(); System.out.println("Full Filter Name: " + filterName); String pluginName = null; if (filterName.contains(MediaFilterService.FILTER_PLUGIN_SEPARATOR)) { String[] fields = filterName.split(MediaFilterService.FILTER_PLUGIN_SEPARATOR); filterName = fields[0]; pluginName = fields[1]; } System.out.println(filterName + (pluginName != null ? " (Plugin: " + pluginName + ")" : "")); } } mediaFilterService.setFilterFormats(filterFormats); //store our filter list into an internal array mediaFilterService.setFilterClasses(filterList); //Retrieve list of identifiers to skip (if any) String skipIds[] = null; if (line.hasOption('s')) { //specified which identifiers to skip when processing skipIds = line.getOptionValues('s'); if (skipIds == null || skipIds.length == 0) { //display error, since no identifiers specified to skip System.err.println("\nERROR: -s (-skip) option requires at least one identifier to SKIP.\n" + "Make sure to separate multiple identifiers with a comma!\n" + "(e.g. MediaFilterManager -s 123456789/34,123456789/323)\n"); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(0); } //save to a global skip list mediaFilterService.setSkipList(Arrays.asList(skipIds)); } Context c = null; try { c = new Context(); // have to be super-user to do the filtering c.turnOffAuthorisationSystem(); // now apply the filters if (identifier == null) { mediaFilterService.applyFiltersAllItems(c); } else // restrict application scope to identifier { DSpaceObject dso = HandleServiceFactory.getInstance().getHandleService().resolveToObject(c, identifier); if (dso == null) { throw new IllegalArgumentException("Cannot resolve " + identifier + " to a DSpace object"); } switch (dso.getType()) { case Constants.COMMUNITY: mediaFilterService.applyFiltersCommunity(c, (Community) dso); break; case Constants.COLLECTION: mediaFilterService.applyFiltersCollection(c, (Collection) dso); break; case Constants.ITEM: mediaFilterService.applyFiltersItem(c, (Item) dso); break; } } c.complete(); c = null; } catch (Exception e) { status = 1; } finally { if (c != null) { c.abort(); } } System.exit(status); }
From source file:org.dspace.app.mediafilter.MediaFilterManager.java
public static void main(String[] argv) throws Exception { // set headless for non-gui workstations System.setProperty("java.awt.headless", "true"); // create an options object and populate it CommandLineParser parser = new PosixParser(); int status = 0; Options options = new Options(); options.addOption("v", "verbose", false, "print all extracted text and other details to STDOUT"); options.addOption("q", "quiet", false, "do not print anything except in the event of errors."); options.addOption("f", "force", false, "force all bitstreams to be processed"); options.addOption("n", "noindex", false, "do NOT update the search index after filtering bitstreams"); options.addOption("i", "identifier", true, "ONLY process bitstreams belonging to identifier"); options.addOption("m", "maximum", true, "process no more than maximum items"); options.addOption("h", "help", false, "help"); //create a "plugin" option (to specify specific MediaFilter plugins to run) OptionBuilder.withLongOpt("plugins"); OptionBuilder.withValueSeparator(','); OptionBuilder.withDescription("ONLY run the specified Media Filter plugin(s)\n" + "listed from '" + MEDIA_FILTER_PLUGINS_KEY + "' in dspace.cfg.\n" + "Separate multiple with a comma (,)\n" + "(e.g. MediaFilterManager -p \n\"Word Text Extractor\",\"PDF Text Extractor\")"); Option pluginOption = OptionBuilder.create('p'); pluginOption.setArgs(Option.UNLIMITED_VALUES); //unlimited number of args options.addOption(pluginOption);//w ww.ja va 2s . c o m //create a "skip" option (to specify communities/collections/items to skip) OptionBuilder.withLongOpt("skip"); OptionBuilder.withValueSeparator(','); OptionBuilder.withDescription( "SKIP the bitstreams belonging to identifier\n" + "Separate multiple identifiers with a comma (,)\n" + "(e.g. MediaFilterManager -s \n 123456789/34,123456789/323)"); Option skipOption = OptionBuilder.create('s'); skipOption.setArgs(Option.UNLIMITED_VALUES); //unlimited number of args options.addOption(skipOption); CommandLine line = null; try { line = parser.parse(options, argv); } catch (MissingArgumentException e) { System.out.println("ERROR: " + e.getMessage()); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(1); } if (line.hasOption('h')) { HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(0); } if (line.hasOption('v')) { isVerbose = true; } isQuiet = line.hasOption('q'); if (line.hasOption('n')) { updateIndex = false; } if (line.hasOption('f')) { isForce = true; } if (line.hasOption('i')) { identifier = line.getOptionValue('i'); } if (line.hasOption('m')) { max2Process = Integer.parseInt(line.getOptionValue('m')); if (max2Process <= 1) { System.out.println("Invalid maximum value '" + line.getOptionValue('m') + "' - ignoring"); max2Process = Integer.MAX_VALUE; } } String filterNames[] = null; if (line.hasOption('p')) { //specified which media filter plugins we are using filterNames = line.getOptionValues('p'); if (filterNames == null || filterNames.length == 0) { //display error, since no plugins specified System.err.println("\nERROR: -p (-plugin) option requires at least one plugin to be specified.\n" + "(e.g. MediaFilterManager -p \"Word Text Extractor\",\"PDF Text Extractor\")\n"); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(1); } } else { //retrieve list of all enabled media filter plugins! String enabledPlugins = ConfigurationManager.getProperty(MEDIA_FILTER_PLUGINS_KEY); filterNames = enabledPlugins.split(",\\s*"); } //initialize an array of our enabled filters List<FormatFilter> filterList = new ArrayList<FormatFilter>(); //set up each filter for (int i = 0; i < filterNames.length; i++) { //get filter of this name & add to list of filters FormatFilter filter = (FormatFilter) PluginManager.getNamedPlugin(FormatFilter.class, filterNames[i]); if (filter == null) { System.err.println( "\nERROR: Unknown MediaFilter specified (either from command-line or in dspace.cfg): '" + filterNames[i] + "'"); System.exit(1); } else { filterList.add(filter); String filterClassName = filter.getClass().getName(); String pluginName = null; //If this filter is a SelfNamedPlugin, //then the input formats it accepts may differ for //each "named" plugin that it defines. //So, we have to look for every key that fits the //following format: filter.<class-name>.<plugin-name>.inputFormats if (SelfNamedPlugin.class.isAssignableFrom(filter.getClass())) { //Get the plugin instance name for this class pluginName = ((SelfNamedPlugin) filter).getPluginInstanceName(); } //Retrieve our list of supported formats from dspace.cfg //For SelfNamedPlugins, format of key is: // filter.<class-name>.<plugin-name>.inputFormats //For other MediaFilters, format of key is: // filter.<class-name>.inputFormats String formats = ConfigurationManager.getProperty(FILTER_PREFIX + "." + filterClassName + (pluginName != null ? "." + pluginName : "") + "." + INPUT_FORMATS_SUFFIX); //add to internal map of filters to supported formats if (formats != null) { //For SelfNamedPlugins, map key is: // <class-name><separator><plugin-name> //For other MediaFilters, map key is just: // <class-name> filterFormats.put( filterClassName + (pluginName != null ? FILTER_PLUGIN_SEPARATOR + pluginName : ""), Arrays.asList(formats.split(",[\\s]*"))); } } //end if filter!=null } //end for //If verbose, print out loaded mediafilter info if (isVerbose) { System.out.println("The following MediaFilters are enabled: "); Iterator<String> i = filterFormats.keySet().iterator(); while (i.hasNext()) { String filterName = i.next(); System.out.println("Full Filter Name: " + filterName); String pluginName = null; if (filterName.contains(FILTER_PLUGIN_SEPARATOR)) { String[] fields = filterName.split(FILTER_PLUGIN_SEPARATOR); filterName = fields[0]; pluginName = fields[1]; } System.out.println(filterName + (pluginName != null ? " (Plugin: " + pluginName + ")" : "")); } } //store our filter list into an internal array filterClasses = (FormatFilter[]) filterList.toArray(new FormatFilter[filterList.size()]); //Retrieve list of identifiers to skip (if any) String skipIds[] = null; if (line.hasOption('s')) { //specified which identifiers to skip when processing skipIds = line.getOptionValues('s'); if (skipIds == null || skipIds.length == 0) { //display error, since no identifiers specified to skip System.err.println("\nERROR: -s (-skip) option requires at least one identifier to SKIP.\n" + "Make sure to separate multiple identifiers with a comma!\n" + "(e.g. MediaFilterManager -s 123456789/34,123456789/323)\n"); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(0); } //save to a global skip list skipList = Arrays.asList(skipIds); } Context c = null; try { c = new Context(); // have to be super-user to do the filtering c.turnOffAuthorisationSystem(); // now apply the filters if (identifier == null) { applyFiltersAllItems(c); } else // restrict application scope to identifier { DSpaceObject dso = HandleManager.resolveToObject(c, identifier); if (dso == null) { throw new IllegalArgumentException("Cannot resolve " + identifier + " to a DSpace object"); } switch (dso.getType()) { case Constants.COMMUNITY: applyFiltersCommunity(c, (Community) dso); break; case Constants.COLLECTION: applyFiltersCollection(c, (Collection) dso); break; case Constants.ITEM: applyFiltersItem(c, (Item) dso); break; } } // update search index? if (updateIndex) { if (!isQuiet) { System.out.println("Updating search index:"); } DSIndexer.setBatchProcessingMode(true); try { DSIndexer.updateIndex(c); } finally { DSIndexer.setBatchProcessingMode(false); } } c.complete(); c = null; } catch (Exception e) { status = 1; } finally { if (c != null) { c.abort(); } } System.exit(status); }
From source file:org.dspace.papaya.mediafilter.PapayaMediaFilterManager.java
public static void main(String[] argv) throws Exception { // set headless for non-gui workstations System.setProperty("java.awt.headless", "true"); // create an options object and populate it CommandLineParser parser = new PosixParser(); int status = 0; Options options = new Options(); options.addOption("v", "verbose", false, "print all extracted text and other details to STDOUT"); options.addOption("q", "quiet", false, "do not print anything except in the event of errors."); options.addOption("f", "force", false, "force all bitstreams to be processed"); options.addOption("i", "identifier", true, "ONLY process bitstreams belonging to identifier"); options.addOption("m", "maximum", true, "process no more than maximum items"); options.addOption("h", "help", false, "help"); //create a "plugin" option (to specify specific MediaFilter plugins to run) OptionBuilder.withLongOpt("plugins"); OptionBuilder.withValueSeparator(','); OptionBuilder.withDescription("ONLY run the specified Media Filter plugin(s)\n" + "listed from '" + MEDIA_FILTER_PLUGINS_KEY + "' in dspace.cfg.\n" + "Separate multiple with a comma (,)\n" + "(e.g. MediaFilterManager -p \n\"Word Text Extractor\",\"PDF Text Extractor\")"); Option pluginOption = OptionBuilder.create('p'); pluginOption.setArgs(Option.UNLIMITED_VALUES); //unlimited number of args options.addOption(pluginOption);//from w w w.j a va2 s .c o m //create a "skip" option (to specify communities/collections/items to skip) OptionBuilder.withLongOpt("skip"); OptionBuilder.withValueSeparator(','); OptionBuilder.withDescription( "SKIP the bitstreams belonging to identifier\n" + "Separate multiple identifiers with a comma (,)\n" + "(e.g. MediaFilterManager -s \n 123456789/34,123456789/323)"); Option skipOption = OptionBuilder.create('s'); skipOption.setArgs(Option.UNLIMITED_VALUES); //unlimited number of args options.addOption(skipOption); CommandLine line = null; try { line = parser.parse(options, argv); } catch (MissingArgumentException e) { System.out.println("ERROR: " + e.getMessage()); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(1); } if (line.hasOption('h')) { HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(0); } if (line.hasOption('v')) { isVerbose = true; } isQuiet = line.hasOption('q'); if (line.hasOption('f')) { isForce = true; } if (line.hasOption('i')) { identifier = line.getOptionValue('i'); } if (line.hasOption('m')) { max2Process = Integer.parseInt(line.getOptionValue('m')); if (max2Process <= 1) { System.out.println("Invalid maximum value '" + line.getOptionValue('m') + "' - ignoring"); max2Process = Integer.MAX_VALUE; } } String filterNames[] = null; if (line.hasOption('p')) { //specified which media filter plugins we are using filterNames = line.getOptionValues('p'); if (filterNames == null || filterNames.length == 0) { //display error, since no plugins specified System.err.println("\nERROR: -p (-plugin) option requires at least one plugin to be specified.\n" + "(e.g. MediaFilterManager -p \"Word Text Extractor\",\"PDF Text Extractor\")\n"); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(1); } } else { //retrieve list of all enabled media filter plugins! String enabledPlugins = ConfigurationManager.getProperty(MEDIA_FILTER_PLUGINS_KEY); filterNames = enabledPlugins.split(",\\s*"); } //initialize an array of our enabled filters List<FormatFilter> filterList = new ArrayList<FormatFilter>(); //set up each filter for (int i = 0; i < filterNames.length; i++) { //get filter of this name & add to list of filters FormatFilter filter = (FormatFilter) PluginManager.getNamedPlugin(FormatFilter.class, filterNames[i]); if (filter == null) { System.err.println( "\nERROR: Unknown MediaFilter specified (either from command-line or in dspace.cfg): '" + filterNames[i] + "'"); System.exit(1); } else { filterList.add(filter); String filterClassName = filter.getClass().getName(); String pluginName = null; //If this filter is a SelfNamedPlugin, //then the input formats it accepts may differ for //each "named" plugin that it defines. //So, we have to look for every key that fits the //following format: filter.<class-name>.<plugin-name>.inputFormats if (SelfNamedPlugin.class.isAssignableFrom(filter.getClass())) { //Get the plugin instance name for this class pluginName = ((SelfNamedPlugin) filter).getPluginInstanceName(); } //Retrieve our list of supported formats from dspace.cfg //For SelfNamedPlugins, format of key is: // filter.<class-name>.<plugin-name>.inputFormats //For other MediaFilters, format of key is: // filter.<class-name>.inputFormats String formats = ConfigurationManager.getProperty(FILTER_PREFIX + "." + filterClassName + (pluginName != null ? "." + pluginName : "") + "." + INPUT_FORMATS_SUFFIX); //add to internal map of filters to supported formats if (formats != null) { //For SelfNamedPlugins, map key is: // <class-name><separator><plugin-name> //For other MediaFilters, map key is just: // <class-name> filterFormats.put( filterClassName + (pluginName != null ? FILTER_PLUGIN_SEPARATOR + pluginName : ""), Arrays.asList(formats.split(",[\\s]*"))); } } //end if filter!=null } //end for //If verbose, print out loaded mediafilter info if (isVerbose) { System.out.println("The following MediaFilters are enabled: "); Iterator<String> i = filterFormats.keySet().iterator(); while (i.hasNext()) { String filterName = i.next(); System.out.println("Full Filter Name: " + filterName); String pluginName = null; if (filterName.contains(FILTER_PLUGIN_SEPARATOR)) { String[] fields = filterName.split(FILTER_PLUGIN_SEPARATOR); filterName = fields[0]; pluginName = fields[1]; } System.out.println(filterName + (pluginName != null ? " (Plugin: " + pluginName + ")" : "")); } } //store our filter list into an internal array filterClasses = (FormatFilter[]) filterList.toArray(new FormatFilter[filterList.size()]); //Retrieve list of identifiers to skip (if any) String skipIds[] = null; if (line.hasOption('s')) { //specified which identifiers to skip when processing skipIds = line.getOptionValues('s'); if (skipIds == null || skipIds.length == 0) { //display error, since no identifiers specified to skip System.err.println("\nERROR: -s (-skip) option requires at least one identifier to SKIP.\n" + "Make sure to separate multiple identifiers with a comma!\n" + "(e.g. MediaFilterManager -s 123456789/34,123456789/323)\n"); HelpFormatter myhelp = new HelpFormatter(); myhelp.printHelp("MediaFilterManager\n", options); System.exit(0); } //save to a global skip list skipList = Arrays.asList(skipIds); } Context c = null; try { c = new Context(); // have to be super-user to do the filtering c.turnOffAuthorisationSystem(); // now apply the filters if (identifier == null) { applyFiltersAllItems(c); } else // restrict application scope to identifier { DSpaceObject dso = HandleManager.resolveToObject(c, identifier); if (dso == null) { throw new IllegalArgumentException("Cannot resolve " + identifier + " to a DSpace object"); } switch (dso.getType()) { case Constants.COMMUNITY: applyFiltersCommunity(c, (Community) dso); break; case Constants.COLLECTION: applyFiltersCollection(c, (Collection) dso); break; case Constants.ITEM: applyFiltersItem(c, (Item) dso); break; } } c.complete(); c = null; } catch (Exception e) { status = 1; } finally { if (c != null) { c.abort(); } } System.exit(status); }
From source file:org.easyrec.plugin.cli.AbstractGeneratorCLI.java
protected AbstractGeneratorCLI() { options = new Options(); OptionBuilder optionBuilder = OptionBuilder.withArgName("tenants"); optionBuilder.withLongOpt("tenant"); optionBuilder.isRequired(false);//from w w w . jav a2s.com optionBuilder.hasArg(true); optionBuilder.withDescription( "Specifiy a tenant to generate rules for. Ranges can be specified e.g. 1 - 3 will generate rules for tenants 1 to 3. Alternatively you can specify a list of tenants like 1,2,4. If omitted rules for all tenants are generated."); Option tenantOption = optionBuilder.create('t'); optionBuilder = OptionBuilder.withLongOpt("uninstall"); optionBuilder.isRequired(false); optionBuilder.hasArg(false); optionBuilder.withDescription("When true the generator is uninstalled when execution finished"); Option uninstallOption = optionBuilder.create('u'); options.addOption(tenantOption); options.addOption(uninstallOption); }
From source file:org.eclipse.jubula.documentation.gen.TexGen.java
/** * @return The command line options//from w w w . ja va2 s . co m */ private static Options createOptions() { Options options = new Options(); OptionBuilder.withArgName("generate type"); //$NON-NLS-1$ OptionBuilder .withDescription("The type of output to generate (i.e. 'actions', 'errors'). Default: 'actions'"); //$NON-NLS-1$ OptionBuilder.hasArg(); // Not required. Default to type 'actions'. options.addOption(OptionBuilder.create("gt")); //$NON-NLS-1$ OptionBuilder.withArgName("template directory"); //$NON-NLS-1$ OptionBuilder.withDescription("The directory which contains the template files"); //$NON-NLS-1$ OptionBuilder.hasArg(); OptionBuilder.isRequired(); options.addOption(OptionBuilder.create("td")); //$NON-NLS-1$ OptionBuilder.withArgName("output directory"); //$NON-NLS-1$ OptionBuilder.withDescription("The output directory"); //$NON-NLS-1$ OptionBuilder.hasArg(); OptionBuilder.isRequired(); options.addOption(OptionBuilder.create("od")); //$NON-NLS-1$ OptionBuilder.withArgName("language"); //$NON-NLS-1$ OptionBuilder.withDescription("The language, e.g. 'en' or 'de'"); //$NON-NLS-1$ OptionBuilder.hasArg(); OptionBuilder.isRequired(false); options.addOption(OptionBuilder.create("nl")); //$NON-NLS-1$ return options; }