List of usage examples for org.apache.commons.cli Options addOption
public Options addOption(String opt, String longOpt, boolean hasArg, String description)
From source file:edu.cmu.lti.oaqa.bio.index.medline.annotated.query.SimpleQueryApp.java
public static void main(String[] args) { Options options = new Options(); options.addOption("u", null, true, "Solr URI"); options.addOption("n", null, true, "Max # of results"); CommandLineParser parser = new org.apache.commons.cli.GnuParser(); try {//from www . j a va 2 s .c o m CommandLine cmd = parser.parse(options, args); String solrURI = null; solrURI = cmd.getOptionValue("u"); if (solrURI == null) { Usage("Specify Solr URI"); } SolrServerWrapper solr = new SolrServerWrapper(solrURI); int numRet = 10; if (cmd.hasOption("n")) { numRet = Integer.parseInt(cmd.getOptionValue("n")); } List<String> fieldList = new ArrayList<String>(); fieldList.add(UtilConstMedline.ID_FIELD); fieldList.add(UtilConstMedline.SCORE_FIELD); fieldList.add(UtilConstMedline.ARTICLE_TITLE_FIELD); fieldList.add(UtilConstMedline.ENTITIES_DESC_FIELD); fieldList.add(UtilConstMedline.ABSTRACT_TEXT_FIELD); BufferedReader sysInReader = new BufferedReader(new InputStreamReader(System.in)); Joiner commaJoiner = Joiner.on(','); while (true) { System.out.println("Input query: "); String query = sysInReader.readLine(); if (null == query) break; QueryTransformer qt = new QueryTransformer(query); String tranQuery = qt.getQuery(); System.out.println("Translated query:"); System.out.println(tranQuery); System.out.println("========================="); SolrDocumentList res = solr.runQuery(tranQuery, fieldList, numRet); System.out.println("Found " + res.getNumFound() + " entries"); for (SolrDocument doc : res) { String id = (String) doc.getFieldValue(UtilConstMedline.ID_FIELD); float score = (Float) doc.getFieldValue(UtilConstMedline.SCORE_FIELD); String title = (String) doc.getFieldValue(UtilConstMedline.ARTICLE_TITLE_FIELD); String titleAbstract = (String) doc.getFieldValue(UtilConstMedline.ABSTRACT_TEXT_FIELD); System.out.println(score + " PMID=" + id + " " + titleAbstract); String entityDesc = (String) doc.getFieldValue(UtilConstMedline.ENTITIES_DESC_FIELD); System.out.println("Entities:"); for (EntityEntry e : EntityEntry.parseEntityDesc(entityDesc)) { System.out.println(String.format("[%d %d] concept=%s concept_ids=%s", e.mStart, e.mEnd, e.mConcept, commaJoiner.join(e.mConceptIds))); } } } solr.close(); } catch (ParseException e) { Usage("Cannot parse arguments"); } catch (Exception e) { System.err.println("Terminating due to an exception: " + e); System.exit(1); } }
From source file:com.thoughtworks.xstream.tools.benchmark.parsers.ParserBenchmark.java
public static void main(String[] args) { int counter = 1000; Options options = new Options(); options.addOption("p", "product", true, "Class name of the product to use for benchmark"); options.addOption("n", true, "Number of repetitions"); Harness harness = new Harness(); harness.addMetric(new DeserializationSpeedMetric(0, false) { public String toString() { return "Initial run deserialization"; }//from w w w .j a v a 2 s . com }); Parser parser = new PosixParser(); try { CommandLine commandLine = parser.parse(options, args); String name = null; if (commandLine.hasOption('p')) { name = commandLine.getOptionValue('p'); } if (name == null || name.equals("DOM")) { harness.addProduct(new XStreamDom()); } if (name == null || name.equals("JDOM")) { harness.addProduct(new XStreamJDom()); } if (name == null || name.equals("DOM4J")) { harness.addProduct(new XStreamDom4J()); } if (name == null || name.equals("XOM")) { harness.addProduct(new XStreamXom()); } if (name == null || name.equals("BEAStAX")) { harness.addProduct(new XStreamBEAStax()); } if (name == null || name.equals("Woodstox")) { harness.addProduct(new XStreamWoodstox()); } if (JVM.is16() && (name == null || name.equals("SJSXP"))) { harness.addProduct(new XStreamSjsxp()); } if (name == null || name.equals("Xpp3")) { harness.addProduct(new XStreamXpp3()); } if (name == null || name.equals("kXML2")) { harness.addProduct(new XStreamKXml2()); } if (name == null || name.equals("Xpp3DOM")) { harness.addProduct(new XStreamXpp3DOM()); } if (name == null || name.equals("kXML2DOM")) { harness.addProduct(new XStreamKXml2DOM()); } if (commandLine.hasOption('n')) { counter = Integer.parseInt(commandLine.getOptionValue('n')); } } catch (ParseException e) { e.printStackTrace(); } harness.addMetric(new DeserializationSpeedMetric(counter, false)); harness.addTarget(new BasicTarget()); harness.addTarget(new ExtendedTarget()); harness.addTarget(new ReflectionTarget()); harness.addTarget(new SerializableTarget()); harness.addTarget(new JavaBeanTarget()); if (false) { harness.addTarget(new FieldReflection()); harness.addTarget(new HierarchyLevelReflection()); harness.addTarget(new InnerClassesReflection()); harness.addTarget(new StaticInnerClassesReflection()); } harness.run(new TextReporter(new PrintWriter(System.out, true))); System.out.println("Done."); }
From source file:gr.demokritos.iit.demos.Demo.java
public static void main(String[] args) { try {//from w w w . j a v a2 s .c o m Options options = new Options(); options.addOption("h", HELP, false, "show help."); options.addOption("i", INPUT, true, "The file containing JSON " + " representations of tweets or SAG posts - 1 per line" + " default file looked for is " + DEFAULT_INFILE); options.addOption("o", OUTPUT, true, "Where to write the output " + " default file looked for is " + DEFAULT_OUTFILE); options.addOption("p", PROCESS, true, "Type of processing to do " + " ner for Named Entity Recognition re for Relation Extraction" + " default is NER"); options.addOption("s", SAG, false, "Whether to process as SAG posts" + " default is off - if passed means process as SAG posts"); CommandLineParser parser = new BasicParser(); CommandLine cmd = parser.parse(options, args); // DEFAULTS String filename = DEFAULT_INFILE; String outfilename = DEFAULT_OUTFILE; String process = NER; boolean isSAG = false; if (cmd.hasOption(HELP)) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("NER + RE extraction module", options); System.exit(0); } if (cmd.hasOption(INPUT)) { filename = cmd.getOptionValue(INPUT); } if (cmd.hasOption(OUTPUT)) { outfilename = cmd.getOptionValue(OUTPUT); } if (cmd.hasOption(SAG)) { isSAG = true; } if (cmd.hasOption(PROCESS)) { process = cmd.getOptionValue(PROCESS); } System.out.println(); System.out.println("Reading from file: " + filename); System.out.println("Process type: " + process); System.out.println("Processing SAG: " + isSAG); System.out.println("Writing to file: " + outfilename); System.out.println(); List<String> jsoni = new ArrayList(); Scanner in = new Scanner(new FileReader(filename)); while (in.hasNextLine()) { String json = in.nextLine(); jsoni.add(json); } PrintWriter writer = new PrintWriter(outfilename, "UTF-8"); System.out.println("Read " + jsoni.size() + " lines from " + filename); if (process.equalsIgnoreCase(RE)) { System.out.println("Running Relation Extraction"); System.out.println(); String json = API.RE(jsoni, isSAG); System.out.println(json); writer.print(json); } else { System.out.println("Running Named Entity Recognition"); System.out.println(); jsoni = API.NER(jsoni, isSAG); /* for(String json: jsoni){ NamedEntityList nel = NamedEntityList.fromJSON(json); nel.prettyPrint(); } */ for (String json : jsoni) { System.out.println(json); writer.print(json); } } writer.close(); } catch (ParseException | UnsupportedEncodingException | FileNotFoundException ex) { Logger.getLogger(Demo.class.getName()).log(Level.SEVERE, null, ex); } }
From source file:it.tizianofagni.sparkboost.AdaBoostMHLearnerExe.java
public static void main(String[] args) { Options options = new Options(); options.addOption("b", "binaryProblem", false, "Indicate if the input dataset contains a binary problem and not a multilabel one"); options.addOption("z", "labels0based", false, "Indicate if the labels IDs in the dataset to classifyLibSvmWithResults are already assigned in the range [0, numLabels-1] included"); options.addOption("l", "enableSparkLogging", false, "Enable logging messages of Spark"); options.addOption("w", "windowsLocalModeFix", true, "Set the directory containing the winutils.exe command"); options.addOption("dp", "documentPartitions", true, "The number of document partitions"); options.addOption("fp", "featurePartitions", true, "The number of feature partitions"); options.addOption("lp", "labelPartitions", true, "The number of label partitions"); CommandLineParser parser = new BasicParser(); CommandLine cmd = null;/*from w w w . j a va 2 s . co m*/ String[] remainingArgs = null; try { cmd = parser.parse(options, args); remainingArgs = cmd.getArgs(); if (remainingArgs.length != 5) throw new ParseException("You need to specify all mandatory parameters"); } catch (ParseException e) { System.out.println("Parsing failed. Reason: " + e.getMessage()); HelpFormatter formatter = new HelpFormatter(); formatter.printHelp(AdaBoostMHLearnerExe.class.getSimpleName() + " [OPTIONS] <inputFile> <outputFile> <numIterations> <sparkMaster> <parallelismDegree>", options); System.exit(-1); } boolean binaryProblem = false; if (cmd.hasOption("b")) binaryProblem = true; boolean labels0Based = false; if (cmd.hasOption("z")) labels0Based = true; boolean enablingSparkLogging = false; if (cmd.hasOption("l")) enablingSparkLogging = true; if (cmd.hasOption("w")) { System.setProperty("hadoop.home.dir", cmd.getOptionValue("w")); } String inputFile = remainingArgs[0]; String outputFile = remainingArgs[1]; int numIterations = Integer.parseInt(remainingArgs[2]); String sparkMaster = remainingArgs[3]; int parallelismDegree = Integer.parseInt(remainingArgs[4]); long startTime = System.currentTimeMillis(); // Disable Spark logging. if (!enablingSparkLogging) { Logger.getLogger("org").setLevel(Level.OFF); Logger.getLogger("akka").setLevel(Level.OFF); } // Create and configure Spark context. SparkConf conf = new SparkConf().setAppName("Spark AdaBoost.MH learner"); JavaSparkContext sc = new JavaSparkContext(conf); // Create and configure learner. AdaBoostMHLearner learner = new AdaBoostMHLearner(sc); learner.setNumIterations(numIterations); if (cmd.hasOption("dp")) { learner.setNumDocumentsPartitions(Integer.parseInt(cmd.getOptionValue("dp"))); } if (cmd.hasOption("fp")) { learner.setNumFeaturesPartitions(Integer.parseInt(cmd.getOptionValue("fp"))); } if (cmd.hasOption("lp")) { learner.setNumLabelsPartitions(Integer.parseInt(cmd.getOptionValue("lp"))); } // Build classifier with MPBoost learner. BoostClassifier classifier = learner.buildModel(inputFile, labels0Based, binaryProblem); // Save classifier to disk. DataUtils.saveModel(sc, classifier, outputFile); long endTime = System.currentTimeMillis(); System.out.println("Execution time: " + (endTime - startTime) + " milliseconds."); }
From source file:cnxchecker.Server.java
public static void main(String[] args) { Options options = new Options(); options.addOption("p", "port", true, "TCP port to bind to (random by default)"); options.addOption("h", "help", false, "Print help"); CommandLineParser parser = new GnuParser(); try {/* w w w . j av a 2 s . co m*/ CommandLine cmd = parser.parse(options, args); if (cmd.hasOption("h")) { HelpFormatter hf = new HelpFormatter(); hf.printHelp("server", options); System.exit(0); } int port = 0; if (cmd.hasOption("p")) { try { port = Integer.parseInt(cmd.getOptionValue("p")); } catch (NumberFormatException e) { printAndExit("Invalid port number " + cmd.getOptionValue("p")); } if (port < 0 || port > 65535) { printAndExit("Invalid port number " + port); } } Server server = new Server(port); server.doit(); } catch (ParseException e) { printAndExit("Failed to parse options: " + e.getMessage()); } }
From source file:dhtaccess.tools.Remove.java
public static void main(String[] args) { int ttl = 3600; // parse properties Properties prop = System.getProperties(); String gateway = prop.getProperty("dhtaccess.gateway"); if (gateway == null || gateway.length() <= 0) { gateway = DEFAULT_GATEWAY;//from www . j a va 2s . c o m } // parse options Options options = new Options(); options.addOption("h", "help", false, "print help"); options.addOption("g", "gateway", true, "gateway URI, list at http://opendht.org/servers.txt"); options.addOption("t", "ttl", true, "how long (in seconds) to store the value"); CommandLineParser parser = new PosixParser(); CommandLine cmd = null; try { cmd = parser.parse(options, args); } catch (ParseException e) { System.out.println("There is an invalid option."); e.printStackTrace(); System.exit(1); } String optVal; if (cmd.hasOption('h')) { usage(COMMAND); System.exit(1); } optVal = cmd.getOptionValue('g'); if (optVal != null) { gateway = optVal; } optVal = cmd.getOptionValue('t'); if (optVal != null) { ttl = Integer.parseInt(optVal); } args = cmd.getArgs(); // parse arguments if (args.length < 3) { usage(COMMAND); System.exit(1); } byte[] key = null, value = null, secret = null; try { key = args[0].getBytes(ENCODE); value = args[1].getBytes(ENCODE); secret = args[2].getBytes(ENCODE); } catch (UnsupportedEncodingException e1) { // NOTREACHED } // prepare for RPC DHTAccessor accessor = null; try { accessor = new DHTAccessor(gateway); } catch (MalformedURLException e) { e.printStackTrace(); System.exit(1); } // RPC int res = accessor.remove(key, value, ttl, secret); String resultString; switch (res) { case 0: resultString = "Success"; break; case 1: resultString = "Capacity"; break; case 2: resultString = "Again"; break; default: resultString = "???"; } System.out.println(resultString); }
From source file:com.spotify.cassandra.opstools.autobalance.Main.java
public static void main(String[] args) throws IOException, InterruptedException, ParseException { final Options options = new Options(); options.addOption("f", "force", false, "Force auto balance"); options.addOption("d", "dryrun", false, "Dry run"); options.addOption("r", "noresolve", false, "Don't resolve host names"); options.addOption("h", "host", true, "Host to connect to (default: localhost)"); options.addOption("p", "port", true, "Port to connect to (default: 7199)"); CommandLineParser parser = new BasicParser(); CommandLine cmd = parser.parse(options, args); new Main().run(cmd); }
From source file:com.zimbra.common.util.RandomPassword.java
public static void main(String args[]) { CommandLineParser parser = new GnuParser(); Options options = new Options(); options.addOption("l", "localpart", false, "generated string does not contain dot(.)"); CommandLine cl = null;/*from w w w.jav a 2 s . com*/ boolean err = false; try { cl = parser.parse(options, args, true); } catch (ParseException pe) { System.err.println("error: " + pe.getMessage()); err = true; } if (err || cl.hasOption('h')) { usage(); } boolean localpart = false; int minLength = DEFAULT_MIN_LENGTH; int maxLength = DEFAULT_MAX_LENGTH; if (cl.hasOption('l')) localpart = true; args = cl.getArgs(); if (args.length != 0) { if (args.length != 2) { usage(); } try { minLength = Integer.valueOf(args[0]).intValue(); maxLength = Integer.valueOf(args[1]).intValue(); } catch (Exception e) { System.err.println(e); e.printStackTrace(); } } System.out.println(generate(minLength, maxLength, localpart)); }
From source file:de.peregrinus.autocopyreport.AutoCopyReport.java
public static void main(String[] args) { SongInfo si;/* w w w . ja va 2s.c om*/ String openlpPath = ""; String crPath = ""; String crDataPath = ""; String crPassword = ""; System.out.println("AutoCopyReport v.1.00.00"); System.out.println("(c) 2014 Volksmission Freudenstadt"); System.out.println("Author: Christoph Fischer <christoph.fischer@volksmission.de>"); //System.out.println("Available under the General Public License (GPL) v2"); System.out.println(); // get options Options options = new Options(); options.addOption("h", "help", false, "display a list of available options"); options.addOption(OptionBuilder.withLongOpt("openlp-path").withDescription("path to OpenLP data directory") .hasArg().withArgName("PATH").create()); options.addOption(OptionBuilder.withLongOpt("copyreport-path") .withDescription("path to the CopyReport program directory").hasArg().withArgName("PATH").create()); options.addOption(OptionBuilder.withLongOpt("copyreport-data-path") .withDescription("path to the CopyReport data directory").hasArg().withArgName("PATH").create()); options.addOption(OptionBuilder.withLongOpt("password") .withDescription("internal password for the CopyReport database").hasArg().withArgName("PASSWORD") .create()); // parse command line try { // parse the command line arguments CommandLineParser parser = new GnuParser(); CommandLine line = parser.parse(options, args); // validate that block-size has been set if (line.hasOption("help")) { // automatically generate the help statement HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("AutoCopyReport", options); System.exit(0); } else { if (line.hasOption("openlp-path")) { openlpPath = line.getOptionValue("openlp-path") + "/songs/songs.sqlite"; System.out.println("OpenLP data path: " + openlpPath); } else { System.out.println( "ERROR: Please supply the path to your OpenLP data folder by using the --openlp-path parameter."); System.exit(0); } if (line.hasOption("copyreport-path")) { crPath = line.getOptionValue("copyreport-path"); System.out.println("Copyreport application database: " + crPath + "/ccldata.h2.db"); } else { System.out.println( "ERROR: Please supply the path to your CopyReport program folder by using the --copyreport-path parameter."); System.exit(0); } if (line.hasOption("copyreport-data-path")) { crDataPath = line.getOptionValue("copyreport-data-path"); System.out.println("Copyreport user database: " + crDataPath + "/userdata.h2.db"); } else { System.out.println( "ERROR: Please supply the path to your CopyReport data folder by using the --copyreport-data-path parameter."); System.exit(0); } if (line.hasOption("password")) { crPassword = line.getOptionValue("password"); } else { System.out.println( "ERROR: Please supply the internal password for the CopyReport database by using the --password parameter."); System.exit(0); } } } catch (ParseException exp) { System.out.println("Unexpected exception:" + exp.getMessage()); System.exit(0); } SongDatabaseConnector sdb = new SongDatabaseConnector(openlpPath); SongRepository cdb = new SongRepository(crPath + "/ccldata", "sa", crPassword); CopyReport rpt = new CopyReport(crDataPath + "/userdata", "sa", crPassword); //rpt.createPeriod("2014"); List<Song> songs = sdb.findLicensedSongs(); for (Song song : songs) { System.out.println(song.title + ": " + song.ccliNumber); if (song.ccliNumber.matches("-?\\d+(\\.\\d+)?")) { si = cdb.findById(song.ccliNumber); if (si != null) rpt.reportSong(si); } else { System.out.println("Format error: '" + song.ccliNumber + "' is not numeric."); } } // wrap up: close the databases cdb.close(); rpt.close(); sdb.close(); }
From source file:metaTile.Main.java
/** * @param args//ww w . j a va 2s .c o m * @throws IOException */ public static void main(String[] args) throws IOException { try { /* parse the command line arguments */ // create the command line parser CommandLineParser parser = new PosixParser(); // create the Options Options options = new Options(); options.addOption("i", "input", true, "File to read original tile list from."); options.addOption("o", "output", true, "File to write shorter meta-tile list to."); options.addOption("m", "metatiles", true, "Number of tiles in x and y direction to group into one meta-tile."); // parse the command line arguments CommandLine commandLine = parser.parse(options, args); if (!commandLine.hasOption("input") || !commandLine.hasOption("output") || !commandLine.hasOption("metatiles")) printUsage(options); String inputFileName = commandLine.getOptionValue("input"); String outputFileName = commandLine.getOptionValue("output"); int metaTileSize = Integer.parseInt(commandLine.getOptionValue("metatiles")); ArrayList<RenderingTile> tiles = new ArrayList<RenderingTile>(); BufferedReader tileListReader = new BufferedReader(new FileReader(new File(inputFileName))); BufferedWriter renderMetatileListWriter = new BufferedWriter(new FileWriter(new File(outputFileName))); String line = tileListReader.readLine(); while (line != null) { String[] columns = line.split("/"); if (columns.length == 3) tiles.add(new RenderingTile(Integer.parseInt(columns[0]), Integer.parseInt(columns[1]), Integer.parseInt(columns[2]))); line = tileListReader.readLine(); } tileListReader.close(); int hits = 0; // tiles which we are already rendering as the top left corner of 4x4 metatiles HashSet<RenderingTile> whitelist = new HashSet<RenderingTile>(); // for each tile in the list see if it has a meta-tile in the whitelist already for (int i = 0; i < tiles.size(); i++) { boolean hit = false; // by default we aren't already rendering this tile as part of another metatile for (int dx = 0; dx < metaTileSize; dx++) { for (int dy = 0; dy < metaTileSize; dy++) { RenderingTile candidate = new RenderingTile(tiles.get(i).z, tiles.get(i).x - dx, tiles.get(i).y - dy); if (whitelist.contains(candidate)) { hit = true; // now exit the two for loops iterating over tiles inside a meta-tile dx = metaTileSize; dy = metaTileSize; } } } // if this tile doesn't already have a meta-tile in the whitelist, add it if (hit == false) { hits++; renderMetatileListWriter.write(tiles.get(i).toString() + "/" + metaTileSize + "\n"); whitelist.add(tiles.get(i)); } } renderMetatileListWriter.close(); System.out.println( "Reduced " + tiles.size() + " tiles into " + hits + " metatiles of size " + metaTileSize); } catch (Exception e) { e.printStackTrace(); } }