List of usage examples for org.apache.commons.cli2 CommandLine hasOption
boolean hasOption(final Option option);
From source file:com.martinkampjensen.thesis.Main.java
private static boolean query(CommandLine cmdLine) { // Options./* w w w .j a v a2 s . co m*/ if (cmdLine.hasOption(_oSeed)) { seed(cmdLine); } // Actions. if (cmdLine.hasOption(_oAnalyze)) { analyze(cmdLine); } else if (cmdLine.hasOption(_oBarriers)) { barriers(cmdLine); } else if (cmdLine.hasOption(_oCheck)) { check(cmdLine); } else if (cmdLine.hasOption(_oConnect)) { connect(cmdLine); } else if (cmdLine.hasOption(_oEvaluate)) { evaluate(cmdLine); } else if (cmdLine.hasOption(_oExecute)) { execute(cmdLine); } else if (cmdLine.hasOption(_oExtract)) { extract(cmdLine); } else if (cmdLine.hasOption(_oMinimize)) { minimize(cmdLine); } else if (cmdLine.hasOption(_oPrint)) { print(cmdLine); } else if (cmdLine.hasOption(_oSample)) { sample(cmdLine); } else if (cmdLine.hasOption(_oVisualize)) { visualize(cmdLine); } else { return false; } return true; }
From source file:com.gsinnovations.howdah.AbstractJob.java
protected static void maybePut(Map<String, String> args, CommandLine cmdLine, Option... opt) { for (Option o : opt) { // the option appeared on the command-line, or it has a value // (which is likely a default value). if (cmdLine.hasOption(o) || cmdLine.getValue(o) != null) { // nulls are ok, for cases where options are simple flags. Object vo = cmdLine.getValue(o); String value = (vo == null) ? null : vo.toString(); args.put(o.getPreferredName(), value); }/*from ww w .j a va 2s . c om*/ } }
From source file:com.elex.dmp.lda.InMemoryCollapsedVariationalBayes0.java
public static int main2(String[] args, Configuration conf) throws Exception { DefaultOptionBuilder obuilder = new DefaultOptionBuilder(); ArgumentBuilder abuilder = new ArgumentBuilder(); GroupBuilder gbuilder = new GroupBuilder(); Option helpOpt = DefaultOptionCreator.helpOption(); Option inputDirOpt = obuilder.withLongName("input").withRequired(true) .withArgument(abuilder.withName("input").withMinimum(1).withMaximum(1).create()) .withDescription("The Directory on HDFS containing the collapsed, properly formatted files having " + "one doc per line") .withShortName("i").create(); Option dictOpt = obuilder.withLongName("dictionary").withRequired(false) .withArgument(abuilder.withName("dictionary").withMinimum(1).withMaximum(1).create()) .withDescription("The path to the term-dictionary format is ... ").withShortName("d").create(); Option dfsOpt = obuilder.withLongName("dfs").withRequired(false) .withArgument(abuilder.withName("dfs").withMinimum(1).withMaximum(1).create()) .withDescription("HDFS namenode URI").withShortName("dfs").create(); Option numTopicsOpt = obuilder.withLongName("numTopics").withRequired(true) .withArgument(abuilder.withName("numTopics").withMinimum(1).withMaximum(1).create()) .withDescription("Number of topics to learn").withShortName("top").create(); Option outputTopicFileOpt = obuilder.withLongName("topicOutputFile").withRequired(true) .withArgument(abuilder.withName("topicOutputFile").withMinimum(1).withMaximum(1).create()) .withDescription("File to write out p(term | topic)").withShortName("to").create(); Option outputDocFileOpt = obuilder.withLongName("docOutputFile").withRequired(true) .withArgument(abuilder.withName("docOutputFile").withMinimum(1).withMaximum(1).create()) .withDescription("File to write out p(topic | docid)").withShortName("do").create(); Option alphaOpt = obuilder.withLongName("alpha").withRequired(false) .withArgument(abuilder.withName("alpha").withMinimum(1).withMaximum(1).withDefault("0.1").create()) .withDescription("Smoothing parameter for p(topic | document) prior").withShortName("a").create(); Option etaOpt = obuilder.withLongName("eta").withRequired(false) .withArgument(abuilder.withName("eta").withMinimum(1).withMaximum(1).withDefault("0.1").create()) .withDescription("Smoothing parameter for p(term | topic)").withShortName("e").create(); Option maxIterOpt = obuilder.withLongName("maxIterations").withRequired(false) .withArgument(/*from w w w . j a va 2 s . c om*/ abuilder.withName("maxIterations").withMinimum(1).withMaximum(1).withDefault(10).create()) .withDescription("Maximum number of training passes").withShortName("m").create(); Option modelCorpusFractionOption = obuilder.withLongName("modelCorpusFraction").withRequired(false) .withArgument(abuilder.withName("modelCorpusFraction").withMinimum(1).withMaximum(1) .withDefault(0.0).create()) .withShortName("mcf").withDescription("For online updates, initial value of |model|/|corpus|") .create(); Option burnInOpt = obuilder.withLongName("burnInIterations").withRequired(false) .withArgument( abuilder.withName("burnInIterations").withMinimum(1).withMaximum(1).withDefault(5).create()) .withDescription("Minimum number of iterations").withShortName("b").create(); Option convergenceOpt = obuilder.withLongName("convergence").withRequired(false) .withArgument( abuilder.withName("convergence").withMinimum(1).withMaximum(1).withDefault("0.0").create()) .withDescription("Fractional rate of perplexity to consider convergence").withShortName("c") .create(); Option reInferDocTopicsOpt = obuilder.withLongName("reInferDocTopics").withRequired(false) .withArgument(abuilder.withName("reInferDocTopics").withMinimum(1).withMaximum(1).withDefault("no") .create()) .withDescription("re-infer p(topic | doc) : [no | randstart | continue]").withShortName("rdt") .create(); Option numTrainThreadsOpt = obuilder .withLongName("numTrainThreads").withRequired(false).withArgument(abuilder .withName("numTrainThreads").withMinimum(1).withMaximum(1).withDefault("1").create()) .withDescription("number of threads to train with").withShortName("ntt").create(); Option numUpdateThreadsOpt = obuilder.withLongName("numUpdateThreads").withRequired(false) .withArgument(abuilder.withName("numUpdateThreads").withMinimum(1).withMaximum(1).withDefault("1") .create()) .withDescription("number of threads to update the model with").withShortName("nut").create(); Option verboseOpt = obuilder.withLongName("verbose").withRequired(false) .withArgument( abuilder.withName("verbose").withMinimum(1).withMaximum(1).withDefault("false").create()) .withDescription("print verbose information, like top-terms in each topic, during iteration") .withShortName("v").create(); Group group = gbuilder.withName("Options").withOption(inputDirOpt).withOption(numTopicsOpt) .withOption(alphaOpt).withOption(etaOpt).withOption(maxIterOpt).withOption(burnInOpt) .withOption(convergenceOpt).withOption(dictOpt).withOption(reInferDocTopicsOpt) .withOption(outputDocFileOpt).withOption(outputTopicFileOpt).withOption(dfsOpt) .withOption(numTrainThreadsOpt).withOption(numUpdateThreadsOpt) .withOption(modelCorpusFractionOption).withOption(verboseOpt).create(); try { Parser parser = new Parser(); parser.setGroup(group); parser.setHelpOption(helpOpt); CommandLine cmdLine = parser.parse(args); if (cmdLine.hasOption(helpOpt)) { CommandLineUtil.printHelp(group); return -1; } String inputDirString = (String) cmdLine.getValue(inputDirOpt); String dictDirString = cmdLine.hasOption(dictOpt) ? (String) cmdLine.getValue(dictOpt) : null; int numTopics = Integer.parseInt((String) cmdLine.getValue(numTopicsOpt)); double alpha = Double.parseDouble((String) cmdLine.getValue(alphaOpt)); double eta = Double.parseDouble((String) cmdLine.getValue(etaOpt)); int maxIterations = Integer.parseInt((String) cmdLine.getValue(maxIterOpt)); int burnInIterations = (Integer) cmdLine.getValue(burnInOpt); double minFractionalErrorChange = Double.parseDouble((String) cmdLine.getValue(convergenceOpt)); int numTrainThreads = Integer.parseInt((String) cmdLine.getValue(numTrainThreadsOpt)); int numUpdateThreads = Integer.parseInt((String) cmdLine.getValue(numUpdateThreadsOpt)); String topicOutFile = (String) cmdLine.getValue(outputTopicFileOpt); String docOutFile = (String) cmdLine.getValue(outputDocFileOpt); String reInferDocTopics = (String) cmdLine.getValue(reInferDocTopicsOpt); boolean verbose = Boolean.parseBoolean((String) cmdLine.getValue(verboseOpt)); double modelCorpusFraction = (Double) cmdLine.getValue(modelCorpusFractionOption); long start = System.nanoTime(); if (conf.get("fs.default.name") == null) { String dfsNameNode = (String) cmdLine.getValue(dfsOpt); conf.set("fs.default.name", dfsNameNode); } String[] terms = loadDictionary(dictDirString, conf); logTime("dictionary loading", System.nanoTime() - start); start = System.nanoTime(); Matrix corpus = loadVectors(inputDirString, conf); logTime("vector seqfile corpus loading", System.nanoTime() - start); start = System.nanoTime(); InMemoryCollapsedVariationalBayes0 cvb0 = new InMemoryCollapsedVariationalBayes0(corpus, terms, numTopics, alpha, eta, numTrainThreads, numUpdateThreads, modelCorpusFraction, 1234); logTime("cvb0 init", System.nanoTime() - start); start = System.nanoTime(); cvb0.setVerbose(verbose); cvb0.iterateUntilConvergence(minFractionalErrorChange, maxIterations, burnInIterations); logTime("total training time", System.nanoTime() - start); if ("randstart".equalsIgnoreCase(reInferDocTopics)) { cvb0.inferDocuments(0.0, 100, true); } else if ("continue".equalsIgnoreCase(reInferDocTopics)) { cvb0.inferDocuments(0.0, 100, false); } start = System.nanoTime(); cvb0.writeModel(new Path(topicOutFile)); DistributedRowMatrixWriter.write(new Path(docOutFile), conf, cvb0.docTopicCounts); logTime("printTopics", System.nanoTime() - start); } catch (OptionException e) { log.error("Error while parsing options", e); CommandLineUtil.printHelp(group); } return 0; }
From source file:com.martinkampjensen.thesis.Main.java
private static void minimize(CommandLine cmdLine) { final String fileOrClassName = (String) cmdLine.getValue(_oMinimize); final Model model = Util.instantiateModel(fileOrClassName); final boolean random = cmdLine.hasOption(_oMinimizeRandom); Application.minimize(model, random); }
From source file:com.martinkampjensen.thesis.Main.java
private static void sample(CommandLine cmdLine) { final String fileOrClassName = (String) cmdLine.getValue(_oSample); final Model model = Util.instantiateModel(fileOrClassName); final int[] angleIds = parseIntArray(cmdLine, _oSampleAngleIds); final boolean random = cmdLine.hasOption(_oSampleRandom); Application.sample(model, angleIds, random); }
From source file:com.ibm.jaql.util.shell.JaqlShellArguments.java
@SuppressWarnings("unchecked") static JaqlShellArguments parseArgs(String... args) { // option builders final DefaultOptionBuilder obuilder = new DefaultOptionBuilder(); final ArgumentBuilder abuilder = new ArgumentBuilder(); final GroupBuilder gbuilder = new GroupBuilder(); // create standard options Option optHelp = obuilder.withShortName("h").withShortName("?").withLongName("help") .withDescription("print this message").create(); Option optJars = obuilder.withShortName("j").withLongName("jars") .withDescription(/*from w w w .ja v a2s. c o m*/ "comma-separated list of jar files to include user defined expressions or data stores") .withArgument(abuilder.withName("args").withMinimum(1).withMaximum(1).create()).create(); Option optSearchPath = obuilder.withShortName("jp").withLongName("jaql-path") .withDescription("colon seperated list of all search path entries") .withArgument(abuilder.withName("args").withMinimum(1).withMaximum(1).create()).create(); Option optBatch = obuilder.withShortName("b").withLongName("batch") .withDescription("run in batch mode (i.e., do not read from stdin)").create(); Option optOutOptions = obuilder.withShortName("o").withLongName("outoptions") .withDescription("output options: json, del and xml or an output IO descriptor. " + "This option is ignored when not running in batch mode.") .withArgument(abuilder.withName("outoptions").withMinimum(1).withMaximum(1).create()).create(); Option optEval = obuilder.withShortName("e").withLongName("eval") .withDescription("evaluate Jaql expression") .withArgument(abuilder.withName("expr").withMinimum(1).withMaximum(1).create()).create(); // create mini-cluster options Option optCluster = obuilder.withShortName("c").withLongName("cluster") .withDescription("use existing cluster (i.e., do not launch a mini-cluster)").create(); Option optNumNodes = obuilder.withShortName("n").withLongName("no-nodes") .withDescription("mini-cluster option: number of nodes to spawn") .withArgument(abuilder.withName("arg").withMinimum(1).withMaximum(1) .withValidator(NumberValidator.getIntegerInstance()).create()) .create(); Option optDir = obuilder.withShortName("d").withLongName("hdfs-dir") .withDescription("mini-cluster option: root HDFs directory") .withArgument(abuilder.withName("arg").withMinimum(1).withMaximum(1).create()).create(); Group clusterOptions = gbuilder.withName("Cluster options").withOption(optCluster).withOption(optDir) .withOption(optNumNodes).create(); // create input files option Option optInputFiles = abuilder.withName("file").withDescription("list of input files").withMinimum(0) .create(); Option optLog = obuilder.withShortName("l").withLongName("log") .withDescription("log options: json, del and xml or an output IO descriptor. ") .withArgument(abuilder.withName("arg").withMinimum(1).withMaximum(1).create()).create(); // combine all options Group options = gbuilder.withName("options").withOption(optHelp).withOption(optJars) .withOption(optSearchPath).withOption(optBatch).withOption(optLog).withOption(optOutOptions) .withOption(optEval).withOption(optInputFiles).withOption(clusterOptions).create(); // parse and print help if necessary CommandLine cl; try { Parser parser = new Parser(); parser.setGroup(options); cl = parser.parse(args); } catch (OptionException e) { printHelpAndExit(e, null, options); return null; } if (cl.hasOption(optHelp)) { printHelpAndExit(null, options); } // validate arguments JaqlShellArguments result = new JaqlShellArguments(); // mini-cluster options if (cl.hasOption(optCluster)) { result.useExistingCluster = true; } if (cl.hasOption(optDir)) { if (result.useExistingCluster) { printHelpAndExit("Options " + optCluster.getPreferredName() + " and " + optDir.getPreferredName() + " are mutually exclusive", options); } result.hdfsDir = (String) cl.getValue(optDir); } if (cl.hasOption(optNumNodes)) { if (result.useExistingCluster) { printHelpAndExit("Options " + optCluster.getPreferredName() + " and " + optNumNodes.getPreferredName() + " are mutually exclusive", options); } result.numNodes = ((Number) cl.getValue(optNumNodes)).intValue(); } // jar files if (cl.hasOption(optJars)) { result.jars = ((String) cl.getValue(optJars)).split(","); for (String jar : result.jars) { if (!new File(jar).exists()) { printHelpAndExit("Jar file " + jar + " not found", options); } } } // search path directories if (cl.hasOption(optSearchPath)) { result.searchPath = ((String) cl.getValue(optSearchPath)).split(":"); for (String dir : result.searchPath) { if (!new File(dir).exists() || !new File(dir).isDirectory()) { printHelpAndExit("Search-path entry " + dir + " not found or is no directory", options); } } } if (cl.hasOption(optBatch)) { result.batchMode = true; if (cl.hasOption(optOutOptions)) { String format = (String) cl.getValue(optOutOptions); try { result.outputAdapter = getOutputAdapter(format); } catch (Exception e) { printHelpAndExit(e, "\"" + format + "\" is neither a valid output format nor a valid IO descriptor", options); } } } // input if (cl.hasOption(optEval)) { String eval = (String) cl.getValue(optEval); if (!eval.endsWith(";")) eval += ";"; result.addInputStream(new ByteArrayInputStream(eval.getBytes())); } if (cl.hasOption(optInputFiles)) { List<String> files = (List<String>) cl.getValues(optInputFiles); for (String file : files) { try { result.addInputStream(new FileInputStream(file)); } catch (FileNotFoundException e) { printHelpAndExit(e, "Input file " + file + " not found", options); } } } // error log if (cl.hasOption(optLog)) { String path = (String) cl.getValue(optLog); try { BufferedJsonRecord logFD = new BufferedJsonRecord(); logFD.add(Adapter.TYPE_NAME, new JsonString("local")); logFD.add(Adapter.LOCATION_NAME, new JsonString(path)); OutputAdapter oa = (OutputAdapter) JaqlUtil.getAdapterStore().output.getAdapter(logFD); result.logAdapter = oa; } catch (Exception e) { printHelpAndExit(e, "\"" + path + "\" invalid", options); } } if (!result.batchMode) { result.addStdin(); } return result; }
From source file:my.mahout.AbstractJob.java
protected static void maybePut(Map<String, List<String>> args, CommandLine cmdLine, Option... opt) { for (Option o : opt) { // the option appeared on the command-line, or it has a value // (which is likely a default value). if (cmdLine.hasOption(o) || cmdLine.getValue(o) != null || (cmdLine.getValues(o) != null && !cmdLine.getValues(o).isEmpty())) { // nulls are ok, for cases where options are simple flags. List<?> vo = cmdLine.getValues(o); if (vo != null && !vo.isEmpty()) { List<String> vals = Lists.newArrayList(); for (Object o1 : vo) { vals.add(o1.toString()); }/*w ww . j a va2 s .c o m*/ args.put(o.getPreferredName(), vals); } else { args.put(o.getPreferredName(), null); } } } }
From source file:com.martinkampjensen.thesis.Main.java
private static void barriers(CommandLine cmdLine) { final String fileOrClassName = (String) cmdLine.getValue(_oBarriers); final String postScript = (String) cmdLine.getValue(_oBarriersPostScript); final String structure = (String) cmdLine.getValue(_oBarriersStructure); final File moleculeFile = new File(fileOrClassName); final File postScriptFile = (postScript == null ? null : new File(postScript)); final File structureFile = (structure == null ? null : new File(structure)); if (cmdLine.hasOption(_oBarriersTrajectory)) { final String trajectory = (String) cmdLine.getValue(_oBarriersTrajectory); final String energy = (String) cmdLine.getValue(_oBarriersEnergy); final File trajectoryFile = new File(trajectory); final File energyFile = new File(energy); final double pruning = parseDouble(cmdLine, _oBarriersPruning); final double neighbor = parseDouble(cmdLine, _oBarriersNeighbor); Application.barriers(moleculeFile, trajectoryFile, energyFile, postScriptFile, structureFile, pruning, neighbor);//from w ww . ja v a 2 s . co m } else { final String topology = (String) cmdLine.getValue(_oBarriersTopology); final File topologyFile = (topology == null ? null : new File(topology)); final Model model = Util.instantiateModel(fileOrClassName, topologyFile); Application.barriers(moleculeFile, model, postScriptFile, structureFile); } }
From source file:egat.cli.minform.MinFormCommandHandler.java
@Override protected void handleAdditionalChildOptions(CommandLine commandLine) throws CommandProcessingException { all = commandLine.hasOption(allOption); }
From source file:egat.cli.ieds.IEDSCommandHandler.java
@Override protected void handleAdditionalChildOptions(CommandLine commandLine) throws CommandProcessingException { pure = commandLine.hasOption(pureOption); }