Example usage for org.apache.commons.collections15 CollectionUtils containsAny

Introduction

In this page you can find the example usage for org.apache.commons.collections15 CollectionUtils containsAny.

Prototype

public static <E> boolean containsAny(final Collection<? extends E> coll1,
        final Collection<? extends E> coll2) 

Source Link

Document

Returns true iff at least one element is in both collections15.

Usage

From source file:logicProteinHypernetwork.networkStates.MinimalNetworkState.java

/**
 * Returns true if two minimal network states are clashing, thus if their entities
 * cannot appear simultaneously if they are their only minimal network states.
 * /*from ww w.  j  a  v a  2 s . c o m*/
 * @param s a minimal network state
 * @return whether they are clashing
 */
public boolean isClash(MinimalNetworkState s) {
    return CollectionUtils.containsAny(necessary, s.impossible)
            || CollectionUtils.containsAny(impossible, s.necessary);
}

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From source file:edu.duke.cabig.c3pr.utils.SecurityUtils.java

/**
 * Checks if user has any of the provided roles.
 * // w w  w . j a va  2  s  .c om
 * @param authentication the authentication
 * @param roleTypes the role types
 * 
 * @return true, if successful
 */
public static boolean hasRole(Authentication authentication, List<RoleTypes> roleTypes) {
    if (roleTypes == null) {
        return false;
    }
    return CollectionUtils.containsAny(roleTypes, getRoleTypes(authentication));
}

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From source file:edu.duke.cabig.c3pr.utils.SecurityUtils.java

/**
 * Checks if user has any of the provided privileges.
 * //from   w ww  . ja v a 2s. c om
 * @param privilegeTypes the privilege types
 * 
 * @return true, if successful
 */
public static boolean hasAnyPrivilege(List<UserPrivilegeType> privilegeTypes) {
    if (privilegeTypes == null) {
        return false;
    }
    List<UserPrivilege> privileges = new ArrayList<UserPrivilege>();
    for (UserPrivilegeType userPrivilegeType : privilegeTypes) {
        privileges.add(new UserPrivilege(userPrivilegeType.getCode()));
    }

    return CollectionUtils.containsAny(privileges, getUserPrivileges());
}

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From source file:org.biopax.validator.rules.BiochemReactParticipantsLocationRule.java

public void check(final Validation validation, BiochemicalReaction react) {
    Set<PhysicalEntity> left = react.getLeft();
    Set<PhysicalEntity> right = react.getRight();
    for (PhysicalEntity lefty : left) {
        for (PhysicalEntity righty : right) {
            // PhysicalEntity is either Complex or SimplePhysicalEntity (NucleicAcid, Protein or SmallMolecule)

            if (!lefty.getModelInterface().equals(righty.getModelInterface())) {
                continue;
            }/*from  w w  w .  j  a va 2  s. co  m*/

            boolean sameComplex = (lefty instanceof Complex) // means - righty is also Complex
                    && CollectionUtils.containsAny(lefty.getName(), righty.getName());
            // Complex does not have entityReference to match the same kind on both sides...

            boolean sameSimplePhysicalEntity = (lefty instanceof SimplePhysicalEntity)
                    && (((SimplePhysicalEntity) lefty).getEntityReference() == null
                            ? ((SimplePhysicalEntity) righty).getEntityReference() == null
                            : ((SimplePhysicalEntity) lefty).getEntityReference()
                                    .isEquivalent(((SimplePhysicalEntity) righty).getEntityReference()));

            if (sameComplex || sameSimplePhysicalEntity) {
                boolean sameLoc = lefty.hasEquivalentCellularLocation(righty);
                if (!sameLoc && !(react instanceof Transport)) {
                    error(validation, react, "participant.location.changed", false, lefty, righty);
                } else if (sameLoc && react instanceof Transport) {
                    error(validation, react, "transport.location.same", false, lefty, righty);
                }
            }
        }
    }
}

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From source file:org.biopax.validator.rules.SameNameDiffKindPhysEntitiesRule.java

public void check(final Validation validation, Model model) {
    Set<SimplePhysicalEntity> peers = new HashSet<SimplePhysicalEntity>(
            model.getObjects(SimplePhysicalEntity.class));

    Cluster<SimplePhysicalEntity> groupping = new Cluster<SimplePhysicalEntity>() {
        @Override//from w  w  w .  j  ava  2  s.  co m
        public boolean match(SimplePhysicalEntity a, SimplePhysicalEntity b) {
            return !a.equals(b) && a.getEntityReference() != null && !a.getName().isEmpty()
                    && !b.getName().isEmpty() && !a.getEntityReference().isEquivalent(b.getEntityReference())
                    && CollectionUtils.containsAny(a.getName(), b.getName());
        }
    };

    Set<Set<SimplePhysicalEntity>> sharedNamesClusters = groupping.cluster(peers, Integer.MAX_VALUE);

    // report the error once for each cluster
    for (Set<SimplePhysicalEntity> sharedNames : sharedNamesClusters) {
        if (sharedNames.size() > 1) {
            SimplePhysicalEntity a = sharedNames.iterator().next();
            error(validation, a, "diff.kind.same.name", false, sharedNames);
        }
    }
}

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From source file:proteinHypernetworkVisualization.implementation.jung.visualization.JungProteinNetworkVisualization.java

public void highlightNetworkEntities(final HashSet<NetworkEntity> networkEntities) {
    final Transformer<Protein, Paint> vft = vv.getRenderContext().getVertexFillPaintTransformer();
    vv.getRenderContext().setVertexFillPaintTransformer(new Transformer<Protein, Paint>() {

        public Paint transform(Protein p) {
            if (networkEntities.contains(p) || CollectionUtils.containsAny(networkEntities,
                    vv.getGraphLayout().getGraph().getIncidentEdges(p))) {
                return Color.WHITE;
            }//from  w ww.  ja  v  a  2  s .  c  o m
            return vft.transform(p);
        }
    });

    /*final Transformer<Interaction, Paint> edt = vv.getRenderContext().getEdgeDrawPaintTransformer();
    vv.getRenderContext().setEdgeDrawPaintTransformer(new Transformer<Interaction, Paint>() {
            
    public Paint transform(Interaction i) {
    if(networkEntities.contains(i))
    return Color.WHITE;
    return edt.transform(i);
    }
    });*/
}

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