Example usage for org.apache.commons.collections15.iterators ArrayIterator ArrayIterator

Introduction

In this page you can find the example usage for org.apache.commons.collections15.iterators ArrayIterator ArrayIterator.

Prototype

public ArrayIterator(final Object array) 

Source Link

Document

Constructs an ArrayIterator that will iterate over the values in the specified array.

Usage

From source file:edu.berkeley.compbio.phyloutils.NearestNodeFinder.java

public static void main(String[] argv) throws IOException, NoSuchNodeException {
    //service.setGreengenesRawFilename(argv[0]);
    service.setHugenholtzFilename(argv[0]);
    //service.setSynonymService(NcbiTaxonomyClient.getInstance());
    service.init();/*w w w . ja va2 s . c  o  m*/

    final int[] targetIds = IntArrayReader.read(argv[1]);
    int[] queryIds = IntArrayReader.read(argv[2]);
    final double minDistance = Double.parseDouble(argv[3]); // implement leave-one-out at any level

    Map<Integer, Double> results = Parallel.map(new ArrayIterator(queryIds), new Function<Integer, Double>() {
        public Double apply(Integer queryId) {
            try {
                double best = Double.MAX_VALUE;
                for (int targetId : targetIds) {
                    double d = service.minDistanceBetween(queryId, targetId);
                    if (d >= minDistance) {
                        best = Math.min(best, d);
                    }
                }
                return best;
            } catch (NoSuchNodeException e) {
                throw new Error(e);
            }
        }
    });

    String outfileName = argv[4];
    PrintWriter out = new PrintWriter(outfileName);
    out.println("id\tdist");

    for (Map.Entry<Integer, Double> entry : results.entrySet()) {
        out.println(entry.getKey() + "\t" + entry.getValue());
    }
    out.close();
}

---

From source file:logicProteinHypernetwork.analysis.pis.MultiPIS.java

public Iterator<NetworkEntity> iterator() {
    return new ArrayIterator<NetworkEntity>(entities);
}

---

From source file:hypernetwork.constraints.Competition.java

@Override
public Iterator<Constraint> iterator() {
    return new ArrayIterator<Constraint>(constraint);
}

---

From source file:proteinHypernetwork.interactions.Interaction.java

/**
 * Iterate over the interactors./*from w  ww. j  a v  a 2  s  . c  o  m*/
 *
 * @return an iterator
 */
@Override
public Iterator<Interactor> iterator() {
    return new ArrayIterator(interactors);
}

---