Example usage for org.apache.commons.configuration2.tree ImmutableNode.Builder addChild

Introduction

In this page you can find the example usage for org.apache.commons.configuration2.tree ImmutableNode.Builder addChild.

Prototype

public ImmutableNode addChild(final ImmutableNode child) 

Source Link

Document

Creates a new ImmutableNode instance which is a copy of this object, but has the given child node added.

Usage

From source file:Executable.Output.java

/**
 * Get the input config for the final imputation step
 * @return The config/*w w  w.j  av a  2s.  com*/
 */
public ImmutableNode getConfig() {
    ImmutableNode Isummary = new ImmutableNode.Builder().name("summary").value(summary).create();
    ImmutableNode Icontrol = new ImmutableNode.Builder().name("control").value(control).create();

    ImmutableNode.Builder config = new ImmutableNode.Builder().name("output").addChild(Isummary)
            .addChild(Icontrol);

    if (partial) {
        config.addChild(new ImmutableNode.Builder().name("partial").value("true").create());
    }
    if (table != null) {
        config.addChild(new ImmutableNode.Builder().name("table").value(table).create());
    }

    return config.create();
}

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From source file:Executable.Input.java

/**
 * Get the input config/*from  w  w  w  .jav a  2s. co m*/
 * @return The config
 */
public ImmutableNode getConfig() {
    ImmutableNode Iin = new ImmutableNode.Builder().name("filename").value(in).create();

    ImmutableNode.Builder config = new ImmutableNode.Builder().name("input").addChild(Iin);

    for (VCFFilter filter : filters) {
        config.addChild(filter.getConfig());
    }

    if (out != null) {
        ImmutableNode Iout = new ImmutableNode.Builder().name("save").value(out).create();
        config.addChild(Iout);
    }

    if (readsformat != null) {
        ImmutableNode Ireadformat = new ImmutableNode.Builder().name("readsformat").value(readsformat).create();
        config.addChild(Ireadformat);
    }

    ImmutableNode Imax = new ImmutableNode.Builder().name("maxdepth").value(maxdepth).create();
    config.addChild(Imax);

    return config.create();
}

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From source file:Executable.Input.java

/**
 * Get the input config for the final imputation step
 * @return The config/*w  w  w  .  j a v  a2 s.co m*/
 */
public ImmutableNode getImputeConfig() {
    if (out != null) {
        ImmutableNode Iin = new ImmutableNode.Builder().name("filename").value(out).create();
        return new ImmutableNode.Builder().name("input").addChild(Iin).create();
    } else {
        ImmutableNode Iin = new ImmutableNode.Builder().name("filename").value(in).create();

        ImmutableNode.Builder config = new ImmutableNode.Builder().name("input").addChild(Iin);

        for (VCFFilter filter : filters) {
            config.addChild(filter.getConfig());
        }

        return config.create();
    }
}

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From source file:Executable.Case.java

/**
 * Get the final imputation stage config for this case
 * @param caller The caller to be used in the final imputation stage
 * @param imputer The optimized imputer to be used in the final imputation stage
 * @param combiner The optimized combiner to be used in the final imputation stage
 * @return The config//from w  w  w  . j  a  va  2  s. c o m
 */
public ImmutableNode getImputeConfig(Caller caller, Imputer imputer, Combiner combiner) {
    ImmutableNode Iname = new ImmutableNode.Builder().name("name").value(name).create();

    ImmutableNode.Builder config = new ImmutableNode.Builder().name("case").addChild(Iname);

    for (VCFFilter filter : filters) {
        config.addChild(filter.getConfig());
    }

    config.addChild(caller.getConfig());

    config.addChild(imputer.getConfig());

    config.addChild(combiner.getConfig());

    return config.create();
}

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From source file:Executable.Case.java

/**
 * Get the config for this case/*from  ww w .  j ava  2 s  . co m*/
 * @return The config
 */
public ImmutableNode getConfig() {
    ImmutableNode Iname = new ImmutableNode.Builder().name("name").value(name).create();
    ImmutableNode Iadditional = new ImmutableNode.Builder().name("additional").value(additional).create();

    ImmutableNode.Builder config = new ImmutableNode.Builder().name("case").addChild(Iname);

    for (VCFFilter filter : filters) {
        config.addChild(filter.getConfig());
    }

    config.addChild(caller.getConfig());

    config.addChild(imputer.getConfig());

    config.addChild(combiner.getConfig());

    config.addChild(print.getConfig());

    config.addChild(Iadditional);

    return config.create();
}

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From source file:Executable.PrintStats.java

/**
 * Get the imputer options config/*  w w  w. jav  a  2s. c o  m*/
 * @return The config
 */
public ImmutableNode getConfig() {
    ImmutableNode.Builder config = new ImmutableNode.Builder().name("stats");

    if (pretty != null) {
        config.addChild(new ImmutableNode.Builder().name("pretty").value(pretty.getAbsolutePath()).create());
    }
    if (depth != null) {
        config.addChild(new ImmutableNode.Builder().name("depth").value(depth.getAbsolutePath()).create());
    }
    if (geno != null) {
        config.addChild(new ImmutableNode.Builder().name("geno").value(geno.getAbsolutePath()).create());
    }
    if (depthGeno != null) {
        config.addChild(
                new ImmutableNode.Builder().name("depthgeno").value(depthGeno.getAbsolutePath()).create());
    }
    if (eachMasked != null) {
        config.addChild(
                new ImmutableNode.Builder().name("eachmasked").value(eachMasked.getAbsolutePath()).create());
    }
    if (partial) {
        config.addChild(new ImmutableNode.Builder().name("partial").value("true").create());
    }

    return config.create();
}

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From source file:org.craftercms.commons.config.YamlConfiguration.java

@SuppressWarnings("unchecked")
protected void buildConfigFromKeyValuePair(String name, Object value, ImmutableNode.Builder parent) {
    if (value instanceof Map) {
        ImmutableNode.Builder node = new ImmutableNode.Builder();
        node.name(name);// www  . j a  v  a 2 s  .  co  m

        buildConfigFromMap((Map<String, Object>) value, node);

        parent.addChild(node.create());
    } else if (value instanceof Collection) {
        buildConfigFromCollection(name, (Collection<Object>) value, parent);
    } else {
        ImmutableNode.Builder node = new ImmutableNode.Builder();
        node.name(name);
        node.value(value);

        parent.addChild(node.create());
    }
}

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From source file:Utils.Log.java

/**
 * Get the config for a caller//from  w w w .  j  a v a  2  s. co  m
 * @param level The level to log
 * @param log The file to log to.  Null logs nothing.
 * @return The config
 */
public static ImmutableNode getConfig(Level level, File log) {
    ImmutableNode.Builder config = new ImmutableNode.Builder().name("log");
    if (log != null) {
        config.addChild(new ImmutableNode.Builder().name("file").value(log).create());
    }

    String ls;
    switch (level) {
    case DEBUG:
        ls = "debug";
        break;
    case DETAIL:
        ls = "detail";
        break;
    case BRIEF:
        ls = "brief";
        break;
    default:
        ls = "critical";
        break;
    }

    config.addChild(new ImmutableNode.Builder().name("level").value(ls).create());

    return config.create();
}

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