List of usage examples for org.apache.commons.exec ExecuteException getMessage
public String getMessage()
From source file:com.tupilabs.pbs.PBS.java
/** * PBS tracejob command./*w w w.j ava 2 s. c om*/ * <p> * Equivalent to tracejob -n [numberOfDays] [jobId] * * @param jobId job id * @param numberOfDays number of days to look for the job * @param quiet quiet mode flag * @return tracejob output */ public static CommandOutput traceJob(String jobId, int numberOfDays, boolean quiet) { final CommandLine cmdLine = new CommandLine(COMMAND_TRACEJOB); cmdLine.addArgument(PARAMETER_NUMBER_OF_DAYS); cmdLine.addArgument(Integer.toString(numberOfDays)); if (quiet) { cmdLine.addArgument(PARAMETER_QUIET_MODE); } cmdLine.addArgument(jobId); final OutputStream out = new ByteArrayOutputStream(); final OutputStream err = new ByteArrayOutputStream(); DefaultExecuteResultHandler resultHandler; try { resultHandler = execute(cmdLine, null, out, err); resultHandler.waitFor(DEFAULT_TIMEOUT); } catch (ExecuteException e) { throw new PBSException("Failed to execute tracejob command: " + e.getMessage(), e); } catch (IOException e) { throw new PBSException("Failed to execute tracejob command: " + e.getMessage(), e); } catch (InterruptedException e) { throw new PBSException("Failed to execute tracejob command: " + e.getMessage(), e); } final int exitValue = resultHandler.getExitValue(); LOGGER.info("tracejob exit value: " + exitValue); LOGGER.fine("tracejob output: " + out.toString()); return new CommandOutput(out.toString(), err.toString()); }
From source file:com.tupilabs.pbs.PBS.java
/** * PBS qstat command.//from w w w .j ava 2s . co m * <p> * Equivalent to qstat -f [param] * * @param name job name * @return list of jobs */ public static List<Job> qstat(String name) { final CommandLine cmdLine = new CommandLine(COMMAND_QSTAT); cmdLine.addArgument(PARAMETER_FULL_STATUS); if (StringUtils.isNotBlank(name)) { cmdLine.addArgument(name); } final OutputStream out = new ByteArrayOutputStream(); final OutputStream err = new ByteArrayOutputStream(); DefaultExecuteResultHandler resultHandler; try { resultHandler = execute(cmdLine, null, out, err); resultHandler.waitFor(DEFAULT_TIMEOUT); } catch (ExecuteException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } catch (IOException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } catch (InterruptedException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } final int exitValue = resultHandler.getExitValue(); LOGGER.info("qstat exit value: " + exitValue); final List<Job> jobs; try { jobs = QSTAT_JOBS_PARSER.parse(out.toString()); } catch (ParseException pe) { throw new PBSException("Failed to parse qstat jobs output: " + pe.getMessage(), pe); } return (jobs == null ? new ArrayList<Job>(0) : jobs); }
From source file:com.tupilabs.pbs.PBS.java
/** * PBS qsub command for an Array Job with Specific PBS_ARRAY_IDs to submit, and resource overrides * <p>// w ww . ja va2 s .co m * Equivalent to qsub -t 1,2,3 -l [resource_name=value,resource_name=value] [param] * * @param input job input file * @param pbsArrayIDs of specified PBS indices * @param resourceOverrides list of resource overrides * @return job id of array job */ public static String qsubArrayJob(String input, List<Integer> pbsArrayIDs, String... resourceOverrides) { final CommandLine cmdLine = new CommandLine(COMMAND_QSUB); cmdLine.addArgument(PARAMETER_ARRAY_JOB_STATUS); String listArgument = StringUtils.join(pbsArrayIDs, ","); cmdLine.addArgument(listArgument); cmdLine.addArgument(PARAMETER_RESOURCE_OVERRIDE_STATUS); String resourceOverrideArgument = StringUtils.join(resourceOverrides, ","); cmdLine.addArgument(resourceOverrideArgument); cmdLine.addArgument(input); final OutputStream out = new ByteArrayOutputStream(); final OutputStream err = new ByteArrayOutputStream(); DefaultExecuteResultHandler resultHandler; try { resultHandler = execute(cmdLine, out, err); resultHandler.waitFor(DEFAULT_TIMEOUT); } catch (ExecuteException e) { throw new PBSException("Failed to execute qsub command: " + e.getMessage(), e); } catch (IOException e) { throw new PBSException("Failed to execute qsub command: " + e.getMessage(), e); } catch (InterruptedException e) { throw new PBSException("Failed to execute qsub command: " + e.getMessage(), e); } final int exitValue = resultHandler.getExitValue(); LOGGER.info("qsub exit value: " + exitValue); LOGGER.fine("qsub output: " + out.toString()); if (exitValue != 0) throw new PBSException("Failed to submit job script " + input + ". Error output: " + err.toString()); String jobId = out.toString(); return jobId.trim(); }
From source file:com.tupilabs.pbs.PBS.java
/** * PBS qstat command./*from ww w . j a v a 2s . c o m*/ * <p> * Equivalent to qstat -Q -f [name] * * @param name queue name * @return list of queues */ public static List<Queue> qstatQueues(String name) { final CommandLine cmdLine = new CommandLine(COMMAND_QSTAT); cmdLine.addArgument(PARAMETER_FULL_STATUS); cmdLine.addArgument(PARAMETER_QUEUE); if (StringUtils.isNotBlank(name)) { cmdLine.addArgument(name); } final OutputStream out = new ByteArrayOutputStream(); final OutputStream err = new ByteArrayOutputStream(); DefaultExecuteResultHandler resultHandler; try { resultHandler = execute(cmdLine, null, out, err); resultHandler.waitFor(DEFAULT_TIMEOUT); } catch (ExecuteException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } catch (IOException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } catch (InterruptedException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } final int exitValue = resultHandler.getExitValue(); LOGGER.info("qstat exit value: " + exitValue); final List<Queue> queues; try { queues = QSTAT_QUEUES_PARSER.parse(out.toString()); } catch (ParseException pe) { throw new PBSException("Failed to parse qstat queues output: " + pe.getMessage(), pe); } return (queues == null ? new ArrayList<Queue>(0) : queues); }
From source file:com.tupilabs.pbs.PBS.java
/** * PBS qstat command for Array Jobs/*from ww w. jav a 2 s. c o m*/ * <p> * Equivalent to qstat -f -t [param] * * @param name job name * @return list of jobs */ public static List<Job> qstatArrayJob(String name) { final CommandLine cmdLine = new CommandLine(COMMAND_QSTAT); cmdLine.addArgument(PARAMETER_FULL_STATUS); cmdLine.addArgument(PARAMETER_ARRAY_JOB_STATUS); if (StringUtils.isNotBlank(name)) { cmdLine.addArgument(name); } final OutputStream out = new ByteArrayOutputStream(); final OutputStream err = new ByteArrayOutputStream(); DefaultExecuteResultHandler resultHandler; try { resultHandler = execute(cmdLine, out, err); resultHandler.waitFor(DEFAULT_TIMEOUT); } catch (ExecuteException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } catch (IOException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } catch (InterruptedException e) { throw new PBSException("Failed to execute qstat command: " + e.getMessage(), e); } final int exitValue = resultHandler.getExitValue(); LOGGER.info("qstat exit value: " + exitValue); final List<Job> jobs; try { jobs = QSTAT_JOBS_PARSER.parse(out.toString()); } catch (ParseException pe) { throw new PBSException("Failed to parse qstat jobs output: " + pe.getMessage(), pe); } return (jobs == null ? new ArrayList<Job>(0) : jobs); }
From source file:com.tupilabs.pbs.PBS.java
/** * PBS qnodes command./*from w w w .j a v a2s.c o m*/ * <p> * Get information about the cluster nodes. * * @param name node name * @return list of nodes * @throws PBSException if an error communicating with the PBS occurs */ public static List<Node> qnodes(String name) { final List<Node> nodes; final CommandLine cmdLine = new CommandLine(COMMAND_QNODES); cmdLine.addArgument(PARAMETER_XML); if (StringUtils.isNotBlank(name)) { cmdLine.addArgument(name); } final OutputStream out = new ByteArrayOutputStream(); final OutputStream err = new ByteArrayOutputStream(); DefaultExecuteResultHandler resultHandler; try { resultHandler = execute(cmdLine, null, out, err); resultHandler.waitFor(DEFAULT_TIMEOUT); } catch (ExecuteException e) { throw new PBSException("Failed to execute qnodes command: " + e.getMessage(), e); } catch (IOException e) { throw new PBSException("Failed to execute qnodes command: " + e.getMessage(), e); } catch (InterruptedException e) { throw new PBSException("Failed to execute qnodes command: " + e.getMessage(), e); } final int exitValue = resultHandler.getExitValue(); LOGGER.info("qnodes exit value: " + exitValue); try { nodes = NODE_XML_PARSER.parse(out.toString()); } catch (ParseException pe) { throw new PBSException("Failed to parse node XML: " + pe.getMessage(), pe); } return nodes; }
From source file:com.creactiviti.piper.plugin.ffmpeg.Ffmpeg.java
@Override public Object handle(Task aTask) throws Exception { List<String> options = aTask.getList("options", String.class); CommandLine cmd = new CommandLine("ffmpeg"); options.forEach(o -> cmd.addArgument(o)); log.debug("{}", cmd); DefaultExecutor exec = new DefaultExecutor(); File tempFile = File.createTempFile("log", null); try (PrintStream stream = new PrintStream(tempFile);) { exec.setStreamHandler(new PumpStreamHandler(stream)); int exitValue = exec.execute(cmd); return exitValue != 0 ? FileUtils.readFileToString(tempFile) : cmd.toString(); } catch (ExecuteException e) { throw new ExecuteException(e.getMessage(), e.getExitValue(), new RuntimeException(FileUtils.readFileToString(tempFile))); } finally {//from w w w . j av a 2 s. com FileUtils.deleteQuietly(tempFile); } }
From source file:com.creactiviti.piper.core.taskhandler.script.Bash.java
@Override public String handle(Task aTask) throws Exception { File scriptFile = File.createTempFile("_script", ".sh"); File logFile = File.createTempFile("log", null); FileUtils.writeStringToFile(scriptFile, aTask.getRequiredString("script")); try (PrintStream stream = new PrintStream(logFile);) { Process chmod = Runtime.getRuntime().exec(String.format("chmod u+x %s", scriptFile.getAbsolutePath())); int chmodRetCode = chmod.waitFor(); if (chmodRetCode != 0) { throw new ExecuteException("Failed to chmod", chmodRetCode); }/* ww w .j a v a 2s. com*/ CommandLine cmd = new CommandLine(scriptFile.getAbsolutePath()); logger.debug("{}", cmd); DefaultExecutor exec = new DefaultExecutor(); exec.setStreamHandler(new PumpStreamHandler(stream)); exec.execute(cmd); return FileUtils.readFileToString(logFile); } catch (ExecuteException e) { throw new ExecuteException(e.getMessage(), e.getExitValue(), new RuntimeException(FileUtils.readFileToString(logFile))); } finally { FileUtils.deleteQuietly(logFile); FileUtils.deleteQuietly(scriptFile); } }
From source file:com.creactiviti.piper.plugin.ffmpeg.Mediainfo.java
@Override public Map<String, Object> handle(Task aTask) throws Exception { CommandLine cmd = new CommandLine("mediainfo"); cmd.addArgument(aTask.getRequiredString("input")); log.debug("{}", cmd); DefaultExecutor exec = new DefaultExecutor(); File tempFile = File.createTempFile("log", null); try (PrintStream stream = new PrintStream(tempFile);) { exec.setStreamHandler(new PumpStreamHandler(stream)); exec.execute(cmd);//www . j a va 2s . co m return parse(FileUtils.readFileToString(tempFile)); } catch (ExecuteException e) { throw new ExecuteException(e.getMessage(), e.getExitValue(), new RuntimeException(FileUtils.readFileToString(tempFile))); } finally { FileUtils.deleteQuietly(tempFile); } }
From source file:com.creactiviti.piper.plugin.ffmpeg.Ffprobe.java
@Override public Map<String, Object> handle(Task aTask) throws Exception { CommandLine cmd = new CommandLine("ffprobe"); cmd.addArgument("-v").addArgument("quiet").addArgument("-print_format").addArgument("json") .addArgument("-show_error").addArgument("-show_format").addArgument("-show_streams") .addArgument(aTask.getRequiredString("input")); log.debug("{}", cmd); DefaultExecutor exec = new DefaultExecutor(); File tempFile = File.createTempFile("log", null); try (PrintStream stream = new PrintStream(tempFile);) { exec.setStreamHandler(new PumpStreamHandler(stream)); exec.execute(cmd);//from w w w . j av a 2 s .c o m return parse(FileUtils.readFileToString(tempFile)); } catch (ExecuteException e) { throw new ExecuteException(e.getMessage(), e.getExitValue(), new RuntimeException(FileUtils.readFileToString(tempFile))); } finally { FileUtils.deleteQuietly(tempFile); } }