Example usage for org.apache.commons.fileupload FileItemStream openStream

List of usage examples for org.apache.commons.fileupload FileItemStream openStream

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Introduction

In this page you can find the example usage for org.apache.commons.fileupload FileItemStream openStream.

Prototype

InputStream openStream() throws IOException;

Source Link

Document

Creates an InputStream , which allows to read the items contents.

Usage

From source file:org.brutusin.rpc.http.RpcServlet.java

/**
 *
 * @param req//from w ww.j  av a  2s . co  m
 * @param rpcRequest
 * @param service
 * @return
 * @throws Exception
 */
private Map<String, InputStream> getStreams(HttpServletRequest req, RpcRequest rpcRequest, HttpAction service)
        throws Exception {
    if (!FileUploadBase.isMultipartContent(new ServletRequestContext(req))) {
        return null;
    }
    int streamsNumber = getInputStreamsNumber(rpcRequest, service);
    boolean isResponseStreamed = service.isBinaryResponse();
    FileItemIterator iter = (FileItemIterator) req.getAttribute(REQ_ATT_MULTIPART_ITERATOR);
    int count = 0;
    final Map<String, InputStream> map = new HashMap();
    final File tempDirectory;
    if (streamsNumber > 1 || streamsNumber == 1 && isResponseStreamed) {
        tempDirectory = createTempUploadDirectory();
        req.setAttribute(REQ_ATT_TEMPORARY_FOLDER, tempDirectory);
    } else {
        tempDirectory = null;
    }
    FileItemStream item = (FileItemStream) req.getAttribute(REQ_ATT_MULTIPART_CURRENT_ITEM);
    long availableLength = RpcConfig.getInstance().getMaxRequestSize();
    while (item != null) {
        count++;
        long maxLength = Math.min(availableLength, RpcConfig.getInstance().getMaxFileSize());
        if (count < streamsNumber || isResponseStreamed) { // if response is streamed all inputstreams have to be readed first
            File file = new File(tempDirectory, item.getFieldName());
            FileOutputStream fos = new FileOutputStream(file);
            try {
                Miscellaneous.pipeSynchronously(new LimitedLengthInputStream(item.openStream(), maxLength),
                        fos);
            } catch (MaxLengthExceededException ex) {
                if (maxLength == RpcConfig.getInstance().getMaxFileSize()) {
                    throw new MaxLengthExceededException(
                            "Upload part '" + item.getFieldName() + "' exceeds maximum length ("
                                    + RpcConfig.getInstance().getMaxFileSize() + " bytes)",
                            RpcConfig.getInstance().getMaxFileSize());
                } else {
                    throw new MaxLengthExceededException("Request exceeds maximum length ("
                            + RpcConfig.getInstance().getMaxRequestSize() + " bytes)",
                            RpcConfig.getInstance().getMaxRequestSize());
                }
            }
            map.put(item.getFieldName(), new MetaDataInputStream(new FileInputStream(file), item.getName(),
                    item.getContentType(), file.length(), null));
            availableLength -= file.length();
        } else if (count == streamsNumber) {
            map.put(item.getFieldName(),
                    new MetaDataInputStream(new LimitedLengthInputStream(item.openStream(), maxLength),
                            item.getName(), item.getContentType(), null, null));
            break;
        }
        req.setAttribute(REQ_ATT_MULTIPART_CURRENT_ITEM, item);
        if (iter.hasNext()) {
            item = iter.next();
        } else {
            item = null;
        }
    }
    if (count != streamsNumber) {
        throw new IllegalArgumentException("Invalid multipart request received. Number of uploaded files ("
                + count + ") does not match expected (" + streamsNumber + ")");
    }
    return map;
}

From source file:org.cellprofiler.subimager.TestImageJHandlerBase.java

protected Response post(Request request, Map<String, NDImage> ndimagesIn, Map<String, NDImage> ndimagesOut) {
    StringWriter writer = new StringWriter();
    try {/* ww  w . j  ava 2s .c o  m*/
        Marshaller marshaller = new Marshaller(writer);
        marshaller.marshal(request);
    } catch (MarshalException e2) {
        throw new AssertionError(e2.getMessage());
    } catch (ValidationException e2) {
        throw new AssertionError(e2.getMessage());
    } catch (IOException e) {
        // TODO Auto-generated catch block
        throw new AssertionError(e.getMessage());
    }
    String xml = writer.toString();

    ArrayList<Part> parts = new ArrayList<Part>();
    parts.add(new StringPart(ImageJHandler.NAME_REQUEST, xml));
    String sURL = String.format("http://localhost:%d/imagej", getPort());
    final PostMethod post = new PostMethod(sURL);
    for (Map.Entry<String, NDImage> entry : ndimagesIn.entrySet()) {
        ByteArrayOutputStream bos = new ByteArrayOutputStream();
        try {
            entry.getValue().encode(bos);
        } catch (IOException e1) {
            e1.printStackTrace();
            throw new AssertionError("Failed to encode image: " + e1.getMessage());
        }
        ByteArrayPartSource src = new ByteArrayPartSource(entry.getKey(), bos.toByteArray());
        FilePart filePart = new FilePart(entry.getKey(), src, "application/octet-stream", "binary");
        parts.add(filePart);
    }
    post.setRequestEntity(new MultipartRequestEntity(parts.toArray(new Part[0]), post.getParams()));
    HttpClient client = new HttpClient();
    int responseCode;
    try {
        responseCode = client.executeMethod(post);
    } catch (HttpException e) {
        throw new AssertionError(e.getMessage());
    } catch (IOException e) {
        throw new AssertionError(e.getMessage());
    }
    assertEquals(HttpURLConnection.HTTP_OK, responseCode);
    final String contentType = post.getResponseHeader("Content-Type").getValue();
    assertTrue(contentType.startsWith("multipart/form-data"));
    final long contentLength = post.getResponseContentLength();
    try {
        final InputStream responseBodyStream = post.getResponseBodyAsStream();
        FileUpload upload = new FileUpload();
        FileItemIterator fileItemIterator;
        fileItemIterator = upload.getItemIterator(new RequestContext() {

            public String getCharacterEncoding() {
                if (post.getResponseHeader("Content-Encoding") == null)
                    return null;
                return post.getResponseHeader("Content-Encoding").getValue();
            }

            public String getContentType() {
                return contentType;
            }

            public int getContentLength() {
                return (int) contentLength;
            }

            InputStream tmpStream = null;

            public InputStream getInputStream() throws IOException {
                if (tmpStream == null) {
                    byte[] buf = new byte[(int) contentLength];
                    int offset = 0;
                    while (offset < buf.length) {
                        offset += responseBodyStream.read(buf, offset, buf.length - offset);
                    }
                    tmpStream = new ByteArrayInputStream(buf);
                }
                return tmpStream;
            }
        });
        assertTrue(fileItemIterator.hasNext());
        FileItemStream fis = fileItemIterator.next();
        assertEquals(fis.getFieldName(), ImageJHandler.NAME_RESPONSE);
        Reader rdr = new InputStreamReader(fis.openStream(), "utf-8");
        Unmarshaller unmarshaller = new Unmarshaller(Response.class);
        unmarshaller.setProperty(XMLProperties.LENIENT_INTEGER_VALIDATION, "true");
        Object oresponse = unmarshaller.unmarshal(rdr);
        assertTrue(oresponse instanceof Response);
        Response response = (Response) oresponse;
        while (fileItemIterator.hasNext()) {
            fis = fileItemIterator.next();
            String name = fis.getFieldName();
            NDImage ndimage = NDImage.decode(fis.openStream());
            ndimagesOut.put(name, ndimage);
        }
        return response;
    } catch (IOException e) {
        e.printStackTrace();
        throw new AssertionError(e.getMessage());
    } catch (FileUploadException e) {
        e.printStackTrace();
        throw new AssertionError(e.getMessage());
    } catch (MarshalException e) {
        e.printStackTrace();
        throw new AssertionError(e.getMessage());
    } catch (ValidationException e) {
        e.printStackTrace();
        throw new AssertionError(e.getMessage());
    } catch (FormatException e) {
        e.printStackTrace();
        throw new AssertionError(e.getMessage());
    }

}

From source file:org.celstec.arlearn2.upload.BlobStoreServlet.java

protected void doPost(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException {
    try {/*from w w  w.j a  v  a  2 s . com*/
        Long runId = null;
        String account = null;
        ServletFileUpload upload = new ServletFileUpload();
        res.setContentType("text/plain");

        FileItemIterator iterator = upload.getItemIterator(req);

        while (iterator.hasNext()) {
            FileItemStream item = iterator.next();
            InputStream stream = item.openStream();

            if (item.isFormField()) {
                if ("runId".equals(item.getFieldName())) {
                    runId = Long.parseLong(Streams.asString(stream));
                }
                if ("account".equals(item.getFieldName())) {
                    account = Streams.asString(stream);
                }
            } else {
                BlobKey blobkey = storeBlob(item.getContentType(), item.getName(), stream);
                if (blobkey != null) {
                    System.out.println(blobkey);
                    // File exists
                    BlobKey oldkey = FilePathManager.getBlobKey(account, runId, item.getName());
                    if (oldkey != null) {
                        FilePathManager.delete(oldkey);
                        blobstoreService.delete(oldkey);
                    }
                    FilePathManager.addFile(runId, account, item.getName(), blobkey);

                } else {
                    blobkey.toString();
                }

            }
        }
    } catch (Exception ex) {
        throw new ServletException(ex);
    }
}

From source file:org.celstec.arlearn2.upload.BlobStoreServletIncremental.java

protected void doPost(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException {
    try {//  ww w  . j  ava  2 s  . c o  m
        Long runId = null;
        String account = null;
        String serverPath = null;
        boolean last = false;
        ServletFileUpload upload = new ServletFileUpload();
        res.setContentType("text/plain");

        FileItemIterator iterator = upload.getItemIterator(req);
        System.out.println("before while");
        while (iterator.hasNext()) {
            System.out.println("in while");
            FileItemStream item = iterator.next();
            InputStream stream = item.openStream();

            if (item.isFormField()) {
                if ("runId".equals(item.getFieldName())) {
                    runId = Long.parseLong(Streams.asString(stream));
                    System.out.println("runid is " + runId);
                }

                if ("account".equals(item.getFieldName())) {
                    account = Streams.asString(stream);
                    System.out.println("account is " + account);
                }
                if ("last".equals(item.getFieldName())) {
                    last = Boolean.parseBoolean(Streams.asString(stream));
                    System.out.println("last is " + last);
                }
                if ("serverPath".equals(item.getFieldName())) {
                    serverPath = Streams.asString(stream);
                    System.out.println("serverPath is " + serverPath);
                }

            } else {
                log.warning("Got an uploaded file: " + item.getFieldName() + ", name = " + item.getName());
                AppEngineFile file = storeBlob(item.getContentType(), item.getName(), stream, last, serverPath);

                BlobKey blobkey = fileService.getBlobKey(file);
                if (blobkey != null) {
                    // File exists
                    BlobKey oldkey = FilePathManager.getBlobKey(account, runId, item.getName());
                    if (oldkey != null) {
                        FilePathManager.delete(oldkey);
                        blobstoreService.delete(oldkey);
                    }
                    FilePathManager.addFile(runId, account, item.getName(), blobkey);
                    System.out.println(blobkey.toString());
                }
                res.getWriter().write(file.getFullPath());
                //               else {
                //                  blobkey.toString();
                //               }

            }
        }
    } catch (Exception ex) {
        throw new ServletException(ex);
    }
}

From source file:org.celstec.arlearn2.upload.UploadGameServlet.java

protected void doPost(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException {
    long gameId = 0l;
    String auth = null;//  w  ww .  j  ava 2 s .  c  o m
    try {
        ServletFileUpload upload = new ServletFileUpload();
        FileItemIterator iter = upload.getItemIterator(req);

        String json = "";
        while (iter.hasNext()) {
            FileItemStream item = iter.next();
            String name = item.getFieldName();
            InputStream stream = item.openStream();
            if (item.isFormField()) {
                String value = Streams.asString(stream);
                if ("gameId".equals(name))
                    gameId = Long.parseLong(value);
                if ("auth".equals(name))
                    auth = value;

            } else {
                json = Streams.asString(stream);

            }
        }

        res.setContentType("text/plain");
        JSONObject jObject = new JSONObject(json);
        Object deserialized = JsonBeanDeserializer.deserialize(json);

        if (deserialized instanceof GamePackage && ((GamePackage) deserialized).getGame() != null)
            unpackGame((GamePackage) deserialized, req, auth);
        if (deserialized instanceof RunPackage && ((RunPackage) deserialized).getRun() != null)
            unpackRun((RunPackage) deserialized, req, gameId, auth);

    } catch (Exception ex) {
        throw new ServletException(ex);
    }
}

From source file:org.codelabor.system.file.web.servlet.FileUploadStreamServlet.java

@Override
protected void upload(HttpServletRequest request, HttpServletResponse response) throws Exception {
    WebApplicationContext ctx = WebApplicationContextUtils
            .getRequiredWebApplicationContext(this.getServletContext());
    FileManager fileManager = (FileManager) ctx.getBean("fileManager");

    boolean isMultipart = ServletFileUpload.isMultipartContent(request);
    Map<String, Object> paramMap = RequestUtils.getParameterMap(request);
    if (logger.isDebugEnabled()) {
        logger.debug(paramMap.toString());
    }/* w w  w  . j a  v  a  2s  .c  om*/

    String mapId = (String) paramMap.get("mapId");
    RepositoryType acceptedRepositoryType = repositoryType;
    String requestedRepositoryType = (String) paramMap.get("repositoryType");
    if (StringUtils.isNotEmpty(requestedRepositoryType)) {
        acceptedRepositoryType = RepositoryType.valueOf(requestedRepositoryType);
    }

    if (isMultipart) {
        ServletFileUpload upload = new ServletFileUpload();
        upload.setFileSizeMax(fileSizeMax);
        upload.setSizeMax(requestSizeMax);
        upload.setHeaderEncoding(characterEncoding);
        upload.setProgressListener(new FileUploadProgressListener());
        try {
            FileItemIterator iter = upload.getItemIterator(request);

            while (iter.hasNext()) {
                FileItemStream fileItemSteam = iter.next();
                if (logger.isDebugEnabled()) {
                    logger.debug(fileItemSteam.toString());
                }
                FileDTO fileDTO = null;
                if (fileItemSteam.isFormField()) {
                    paramMap.put(fileItemSteam.getFieldName(),
                            Streams.asString(fileItemSteam.openStream(), characterEncoding));
                } else {
                    if (fileItemSteam.getName() == null || fileItemSteam.getName().length() == 0)
                        continue;

                    // set DTO
                    fileDTO = new FileDTO();
                    fileDTO.setMapId(mapId);
                    fileDTO.setRealFilename(FilenameUtils.getName(fileItemSteam.getName()));
                    if (acceptedRepositoryType == RepositoryType.FILE_SYSTEM) {
                        fileDTO.setUniqueFilename(getUniqueFilename());
                    }
                    fileDTO.setContentType(fileItemSteam.getContentType());
                    fileDTO.setRepositoryPath(realRepositoryPath);
                    if (logger.isDebugEnabled()) {
                        logger.debug(fileDTO.toString());
                    }
                    UploadUtils.processFile(acceptedRepositoryType, fileItemSteam.openStream(), fileDTO);
                }
                if (fileDTO != null)
                    fileManager.insertFile(fileDTO);
            }
        } catch (FileUploadException e) {
            e.printStackTrace();
            logger.error(e.getMessage());
        } catch (Exception e) {
            e.printStackTrace();
            logger.error(e.getMessage());
        }
    } else {
        paramMap = RequestUtils.getParameterMap(request);
    }
    try {
        processParameters(paramMap);
    } catch (Exception e) {
        e.printStackTrace();
        logger.error(e.getMessage());
    }
    dispatch(request, response, forwardPathUpload);

}

From source file:org.collectionspace.chain.controller.WebUIRequest.java

private void initRequest(UIUmbrella umbrella, HttpServletRequest request, HttpServletResponse response,
        List<String> p) throws IOException, UIException {
    this.request = request;
    this.response = response;
    boolean isMultipart = ServletFileUpload.isMultipartContent(request);
    if (isMultipart) {
        // Create a new file upload handler
        ServletFileUpload upload = new ServletFileUpload();

        // Parse the request
        FileItemIterator iter;/*from www .  j  ava 2s. c  o m*/
        try {
            iter = upload.getItemIterator(request);
            while (iter.hasNext()) {
                FileItemStream item = iter.next();
                String name = item.getFieldName();
                //InputStream stream = item.openStream();
                if (item.isFormField()) {
                    //   System.out.println("Form field " + name + " with value "
                    //    + Streams.asString(stream) + " detected.");
                } else {
                    //   System.out.println("File field " + name + " with file name "
                    //    + item.getName() + " detected.");
                    // Process the input stream
                    contentHeaders = item.getHeaders();
                    uploadName = item.getName();

                    ByteArrayOutputStream byteOut = new ByteArrayOutputStream();
                    if (item != null) {
                        InputStream stream = item.openStream();
                        IOUtils.copy(stream, byteOut);
                        new TeeInputStream(stream, byteOut);

                    }
                    bytebody = byteOut.toByteArray();
                }
            }
        } catch (FileUploadException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }
    } else {
        body = IOUtils.toString(request.getInputStream(), "UTF-8");
    }

    this.ppath = p.toArray(new String[0]);
    if (!(umbrella instanceof WebUIUmbrella))
        throw new UIException("Bad umbrella");
    this.umbrella = (WebUIUmbrella) umbrella;
    session = calculateSessionId();

}

From source file:org.csi.yucca.storage.datamanagementapi.service.MetadataService.java

@POST
@Path("/{tenant}")
@Produces(MediaType.APPLICATION_JSON)/*  w  ww .  ja  va  2 s .  c o  m*/
public String createMetadata(@PathParam("tenant") String tenant, @Context HttpServletRequest request)
        throws NumberFormatException, UnknownHostException {
    log.debug("[MetadataService::createMetadata] - START");

    String datasetMetadata = null;
    String encoding = null;
    String formatType = null;
    String csvSeparator = null;
    boolean skipFirstRow = false;
    String csvData = null;
    String fileName = null;

    try {
        ServletFileUpload upload = new ServletFileUpload();
        FileItemIterator iterator = upload.getItemIterator(request);
        while (iterator.hasNext()) {
            FileItemStream item = iterator.next();
            if (IMPORT_BULKDATASET_METADATA_REQ_KEY.equals(item.getFieldName()))
                datasetMetadata = read(item.openStream());
            else if (IMPORT_BULKDATASET_ENCODING_REQ_KEY.equals(item.getFieldName()))
                encoding = read(item.openStream());
            else if (IMPORT_BULKDATASET_FORMAT_TYPE_REQ_KEY.equals(item.getFieldName()))
                formatType = read(item.openStream());
            else if (IMPORT_BULKDATASET_CSV_SEP_REQ_KEY.equals(item.getFieldName()))
                csvSeparator = read(item.openStream());
            else if (IMPORT_BULKDATASET_CSV_SKIP_FIRS_ROW_REQ_KEY.equals(item.getFieldName()))
                skipFirstRow = new Boolean(read(item.openStream()));
            else if (IMPORT_BULKDATASET_FILE_REQ_KEY.equals(item.getFieldName())) {
                csvData = readFileRows(item.openStream(), encoding);
                fileName = item.getName();
            }
        }

    } catch (Exception e) {
        e.printStackTrace();
    }

    log.debug("[MetadataService::createMetadata] - encoding: " + encoding + ", formatType: " + formatType
            + ", csvSeparator: " + csvSeparator);
    Metadata metadata = Metadata.fromJson(datasetMetadata);
    if (fileName != null)
        metadata.getInfo().addFilename(fileName);

    CreateDatasetResponse createDatasetResponse = new CreateDatasetResponse();

    metadata.setDatasetVersion(1);
    if (metadata.getConfigData() == null)
        metadata.setConfigData(new ConfigData());
    metadata.getConfigData().setType(Metadata.CONFIG_DATA_TYPE_DATASET);
    metadata.getConfigData().setSubtype(Metadata.CONFIG_DATA_SUBTYPE_BULK_DATASET);
    metadata.getConfigData().setCurrent(1);
    if (metadata.getInfo() == null)
        metadata.setInfo(new Info());

    if (metadata.getInfo().getFields() != null) {
        for (Field field : metadata.getInfo().getFields()) {
            field.setFieldName(Util.cleanStringCamelCase(field.getFieldName()));
            if (field != null && field.getDataType() == null)
                field.setDataType("string");
        }
    }
    metadata.getInfo().setRegistrationDate(new Date());
    try {

        List<SDPBulkInsertException> checkFileToWriteErrors = null;
        MongoDBDataUpload dataUpload = new MongoDBDataUpload();
        if (csvData != null) {
            checkFileToWriteErrors = dataUpload.checkFileToWrite(csvData, csvSeparator, metadata, skipFirstRow);
        }

        if (checkFileToWriteErrors != null && checkFileToWriteErrors.size() > 0) {
            for (SDPBulkInsertException error : checkFileToWriteErrors) {
                createDatasetResponse.addErrorMessage(new ErrorMessage(error.getErrorCode(),
                        error.getErrorMessage(), error.getErrorDetail()));
            }
        } else {
            MongoClient mongo = MongoSingleton.getMongoClient();
            String supportDb = Config.getInstance().getDbSupport();
            String supportDatasetCollection = Config.getInstance().getCollectionSupportDataset();

            MongoDBMetadataDAO metadataDAO = new MongoDBMetadataDAO(mongo, supportDb, supportDatasetCollection);

            String supportApiCollection = Config.getInstance().getCollectionSupportApi();
            MongoDBApiDAO apiDAO = new MongoDBApiDAO(mongo, supportDb, supportApiCollection);

            BasicDBObject searchTenantQuery = new BasicDBObject();
            searchTenantQuery.put("tenantCode", tenant);
            DBCollection tenantCollection = mongo.getDB(supportDb).getCollection("tenant");
            DBObject tenantData = tenantCollection.find(searchTenantQuery).one();
            Long idTenant = ((Number) tenantData.get("idTenant")).longValue();

            int maxDatasetNum = ((Number) tenantData.get("maxDatasetNum")).intValue();

            if (maxDatasetNum > 0) {

                int numCurrentDataset = metadataDAO.countAllMetadata(tenant, true);
                log.info("[MetadataService::createMetadata] -  tenant=" + tenant + "     maxDatasetNum="
                        + maxDatasetNum + "        numCurrentDataset=" + numCurrentDataset);
                //TODO
                if (numCurrentDataset >= maxDatasetNum)
                    throw new MaxDatasetNumException("too many dataset");

            }

            metadata.getConfigData().setIdTenant(idTenant);

            // binary metadata: create a metadata record specific for attachment
            Metadata binaryMetadata = null;
            if (metadata.getInfo().getFields() != null) {
                for (Field field : metadata.getInfo().getFields()) {
                    if (field.getDataType().equals("binary")) {
                        binaryMetadata = Metadata.createBinaryMetadata(metadata);
                        break;
                    }
                }
            }
            if (binaryMetadata != null) {
                Metadata binaryMetadataCreated = metadataDAO.createMetadata(binaryMetadata, null);
                metadata.getInfo().setBinaryDatasetVersion(binaryMetadataCreated.getDatasetVersion());
                metadata.getInfo().setBinaryIdDataset(binaryMetadataCreated.getIdDataset());
            }

            List<Tenantsharing> lista = new ArrayList<Tenantsharing>();
            if (metadata.getInfo().getTenantssharing() != null) {
                Set<String> tenantSet = new TreeSet<String>();
                for (Tenantsharing tenantInList : metadata.getInfo().getTenantssharing().getTenantsharing()) {
                    if (!tenantInList.getTenantCode().equals(metadata.getConfigData().getTenantCode())
                            && !tenantSet.contains(metadata.getConfigData().getTenantCode())
                            && tenantInList.getIsOwner() != 1) {
                        lista.add(tenantInList);
                        tenantSet.add(tenantInList.getTenantCode());
                    }
                }
            }
            Tenantsharing owner = new Tenantsharing();
            owner.setIdTenant(metadata.getConfigData().getIdTenant());
            owner.setIsOwner(1);
            owner.setTenantCode(metadata.getConfigData().getTenantCode());
            owner.setTenantName(metadata.getConfigData().getTenantCode());
            // owner.setTenantDescription(metadata.getConfigData().get);

            lista.add(owner);
            Tenantsharing arrayTenant[] = new Tenantsharing[lista.size()];
            arrayTenant = lista.toArray(arrayTenant);
            if (metadata.getInfo().getTenantssharing() == null) {
                Tenantssharing tenantssharing = new Tenantssharing();
                metadata.getInfo().setTenantssharing(tenantssharing);
            }
            metadata.getInfo().getTenantssharing().setTenantsharing(arrayTenant);

            // opendata
            if (!"public".equals(metadata.getInfo().getVisibility())) {
                metadata.setOpendata(null);
            }

            Metadata metadataCreated = metadataDAO.createMetadata(metadata, null);

            MyApi api = MyApi.createFromMetadataDataset(metadataCreated);
            api.getConfigData().setType(Metadata.CONFIG_DATA_TYPE_API);
            api.getConfigData().setSubtype(Metadata.CONFIG_DATA_SUBTYPE_API_MULTI_BULK);

            MyApi apiCreated = apiDAO.createApi(api);

            createDatasetResponse.setMetadata(metadataCreated);
            createDatasetResponse.setApi(apiCreated);

            /*
             * Create api in the store
             */
            String apiName = "";
            try {
                apiName = StoreService.createApiforBulk(metadata, false, datasetMetadata);
            } catch (Exception duplicate) {
                if (duplicate.getMessage().toLowerCase().contains("duplicate")) {
                    try {
                        apiName = StoreService.createApiforBulk(metadata, true, datasetMetadata);
                    } catch (Exception e) {
                        log.error(
                                "[MetadataService::createMetadata] - ERROR to update API in Store for Bulk. Message: "
                                        + duplicate.getMessage());
                    }
                } else {
                    log.error(
                            "[MetadataService::createMetadata] -  ERROR in create or update API in Store for Bulk. Message: "
                                    + duplicate.getMessage());
                }
            }
            try {

                StoreService.publishStore("1.0", apiName, "admin");
                Set<String> tenantSet = new TreeSet<String>();
                if (metadata.getInfo().getTenantssharing() != null) {
                    for (Tenantsharing tenantSh : metadata.getInfo().getTenantssharing().getTenantsharing()) {
                        tenantSet.add(tenantSh.getTenantCode());
                        String appName = "userportal_" + tenantSh.getTenantCode();
                        StoreService.addSubscriptionForTenant(apiName, appName);
                    }
                }
                if (!tenantSet.contains(metadata.getConfigData().getTenantCode())) {
                    String appName = "userportal_" + metadata.getConfigData().getTenantCode();
                    StoreService.addSubscriptionForTenant(apiName, appName);
                }

            } catch (Exception e) {
                log.error("[MetadataService::createMetadata] - ERROR in publish Api in store - message: "
                        + e.getMessage());
            }

            if (csvData != null) {
                try {
                    dataUpload.writeFileToMongo(mongo, "DB_" + tenant, "data", metadataCreated);
                } catch (Exception e) {
                    log.error("[MetadataService::createMetadata] - writeFileToMongo ERROR: " + e.getMessage());
                    createDatasetResponse.addErrorMessage(new ErrorMessage(e));
                    e.printStackTrace();
                }
            }
        }
    } catch (MaxDatasetNumException ex) {
        log.error("[MetadataService::createMetadata] - MaxDatasetNumException ERROR: ", ex);
        createDatasetResponse.addErrorMessage(new ErrorMessage(ex));

    }
    return createDatasetResponse.toJson();
}

From source file:org.csi.yucca.storage.datamanagementapi.service.MetadataService.java

@POST
@Path("/add/{tenant}/{datasetCode}")
@Produces(MediaType.APPLICATION_JSON)//from w  ww . j a  v a2  s . com
public String addData(@PathParam("tenant") String tenant, @PathParam("datasetCode") String datasetCode,
        @Context HttpServletRequest request) throws NumberFormatException, UnknownHostException {
    log.debug("[MetadataService::addData] - START");

    String encoding = null;
    String formatType = null;
    String csvSeparator = null;
    boolean skipFirstRow = false;
    String csvData = null;
    String fileName = null;

    try {
        ServletFileUpload upload = new ServletFileUpload();
        FileItemIterator iterator = upload.getItemIterator(request);
        while (iterator.hasNext()) {
            FileItemStream item = iterator.next();
            if (IMPORT_BULKDATASET_ENCODING_REQ_KEY.equals(item.getFieldName()))
                encoding = read(item.openStream());
            else if (IMPORT_BULKDATASET_FORMAT_TYPE_REQ_KEY.equals(item.getFieldName()))
                formatType = read(item.openStream());
            else if (IMPORT_BULKDATASET_CSV_SEP_REQ_KEY.equals(item.getFieldName()))
                csvSeparator = read(item.openStream());
            else if (IMPORT_BULKDATASET_CSV_SKIP_FIRS_ROW_REQ_KEY.equals(item.getFieldName()))
                skipFirstRow = new Boolean(read(item.openStream()));
            else if (IMPORT_BULKDATASET_FILE_REQ_KEY.equals(item.getFieldName())) {
                csvData = readFileRows(item.openStream(), encoding);
                fileName = item.getName();
            }

        }

    } catch (Exception e) {
        e.printStackTrace();
    }

    log.debug("[MetadataService::addData] - encoding: " + encoding + ", formatType: " + formatType
            + ", csvSeparator: " + csvSeparator);
    MongoClient mongo = MongoSingleton.getMongoClient();
    String supportDb = Config.getInstance().getDbSupport();
    String supportDatasetCollection = Config.getInstance().getCollectionSupportDataset();
    MongoDBMetadataDAO metadataDAO = new MongoDBMetadataDAO(mongo, supportDb, supportDatasetCollection);

    Metadata existingMetadata = metadataDAO.readCurrentMetadataByCode(datasetCode);
    existingMetadata.getInfo().addFilename(fileName);
    metadataDAO.updateMetadata(existingMetadata);

    UpdateDatasetResponse updateDatasetResponse = new UpdateDatasetResponse();

    MongoDBDataUpload dataUpload = new MongoDBDataUpload();

    List<SDPBulkInsertException> checkFileToWriteErrors = dataUpload.checkFileToWrite(csvData, csvSeparator,
            existingMetadata, skipFirstRow);
    if (checkFileToWriteErrors != null && checkFileToWriteErrors.size() > 0) {
        for (SDPBulkInsertException error : checkFileToWriteErrors) {
            updateDatasetResponse.addErrorMessage(
                    new ErrorMessage(error.getErrorCode(), error.getErrorMessage(), error.getErrorDetail()));
        }
    } else {

        try {
            dataUpload.writeFileToMongo(mongo, "DB_" + tenant, "data", existingMetadata);
        } catch (Exception e) {
            log.error("[MetadataService::addData] - writeFileToMongo ERROR: " + e.getMessage());
            updateDatasetResponse.addErrorMessage(new ErrorMessage(e));
            e.printStackTrace();
        }
    }

    return updateDatasetResponse.toJson();
}

From source file:org.cvit.cabig.dmr.cmef.server.SubmitJobResource.java

@Post("multi")
public Representation submitJob(Representation formRep) {
    RestletFileUpload upload = new RestletFileUpload();
    ComputationJob job = new ComputationJob();
    boolean inIframe = false;
    try {/*from   w  ww . j a  v  a  2 s  . co  m*/
        FileItemIterator items = upload.getItemIterator(formRep);
        List<ParameterValue> values = new ArrayList<ParameterValue>();
        job.setParameterValues(values);
        State state = State.TITLE;
        while (items.hasNext()) {
            FileItemStream item = items.next();
            InputStream itemStream = item.openStream();
            switch (state) {
            case TITLE:
                job.setTitle(Streams.asString(itemStream));
                state = State.DESC;
                break;
            case DESC:
                job.setDescription(Streams.asString(itemStream));
                state = State.COMMENTS;
                break;
            case COMMENTS:
                job.setComment(Streams.asString(itemStream));
                state = State.PARAMS;
                break;
            case PARAMS:
                if (item.getFieldName().equals("iframe")) {
                    inIframe = Boolean.parseBoolean(Streams.asString(itemStream));
                } else {
                    Parameter param = new Parameter();
                    param.setName(parseParamName(item.getFieldName()));
                    ParameterValue value = new ParameterValue();
                    if (item.isFormField()) {
                        value.setValue(Streams.asString(itemStream));
                    } else {
                        value.setValue(storeFile(item.getName(), itemStream).getSource());
                    }
                    value.setJob(job);
                    value.setParameter(param);
                    param.setValue(value);
                    values.add(value);
                }
                break;
            }
        }
    } catch (Exception e) {
        throw new ResourceException(Status.SERVER_ERROR_INTERNAL,
                "Exception processing submit job form: " + e.getMessage(), e);
    }

    job = addNewJob(job);
    ComputationJob startedJob = startJob(job);

    if (inIframe) {
        return new StringRepresentation(buildIframeResponse(job), MediaType.TEXT_HTML);
    } else {
        Reference jobRef = getNamespace().jobRef(entryName, modelName,
                getResolver().getJobName(startedJob.getId()), true);
        redirectSeeOther(jobRef);
        return new StringRepresentation("Job submitted, URL: " + jobRef.toString() + ".");
    }
}