Example usage for org.apache.commons.io FileUtils writeLines

Introduction

In this page you can find the example usage for org.apache.commons.io FileUtils writeLines.

Prototype

public static void writeLines(File file, Collection lines) throws IOException 

Source Link

Document

Writes the toString() value of each item in a collection to the specified File line by line.

Usage

From source file:com.github.jrh3k5.mojo.flume.AbstractFlumeAgentsMojoTest.java

/**
 * Test the copying of logging properties.
 * /*from   w  w  w  .  ja va 2  s.  c  om*/
 * @throws Exception
 *             If any errors occur during the test run.
 * @since 2.1.1
 */
@Test
public void testCopyLoggingProperties() throws Exception {
    final File unitTestDir = new File(String.format("target/unit-tests/%s/testCopyLoggingProperties/%s",
            getClass().getSimpleName(), UUID.randomUUID()));
    final File flumeDirectory = new File(unitTestDir, "flume");
    final File loggingProperties = new File(unitTestDir, "logging.properties");
    final String loggingPropertiesText = UUID.randomUUID().toString();
    FileUtils.writeLines(loggingProperties, Collections.singleton(loggingPropertiesText));

    when(agent.getLoggingProperties()).thenReturn(loggingProperties);
    mojo.copyLoggingProperties(agent, flumeDirectory);

    // The file should have been copied to conf/log4j.properties beneath the Flume directory
    final File expectedLoggingProperties = new File(flumeDirectory, "conf/log4j.properties");
    assertThat(expectedLoggingProperties).exists();
    // Trim, because FileUtils.writeLines() adds newline characters
    assertThat(FileUtils.readFileToString(expectedLoggingProperties).trim()).isEqualTo(loggingPropertiesText);
}

---

From source file:com.blackducksoftware.tools.commonframework.core.config.ConfigurationFileTest.java

@Test
public void testLegacyPasswordPlainTextIsplaintextNotSet() throws Exception {
    final File sourceConfigFile = new File("src/test/resources/psw_encryption/legacy_plain_notset.properties");
    final File configFile = File.createTempFile(
            "com.blackducksoftware.tools.commonframework.core.config.ConfigurationFileTest", "test1");
    filesToDelete.add(configFile);/*from w w w.  ja  va  2s.  co m*/
    configFile.deleteOnExit();
    FileUtils.copyFile(sourceConfigFile, configFile);
    final ConfigurationFile cf = new ConfigurationFile(configFile.getAbsolutePath());
    final List<String> origLines = cf.getLines();

    List<String> updatedLines = null;
    if (cf.isInNeedOfUpdate()) {
        updatedLines = cf.saveWithEncryptedPasswords();
    }

    assertTrue(updatedLines.size() > 0);
    final Iterator<String> updatedLinesIter = updatedLines.iterator();
    for (final String origLine : origLines) {
        if (!updatedLinesIter.hasNext()) {
            fail("Updated file has fewer lines than original");
        }
        String updatedLine = updatedLinesIter.next();

        // make sure obsolete properties didn't sneak in somehow
        assertFalse(updatedLine.matches("^.*\\.password\\.isplaintext=.*$"));

        // If this is a password, verify that it was encoded, and that the
        // isencrypted=true was inserted after it
        if (origLine.startsWith("cc.password=")) {
            assertEquals(
                    "cc.password=,\\(f9b^6ck-Sr-A2!jWeRlI'nKT:u_PlI'nKT:u_PlI'nKT:u_PlI'nKT:u_PlI'nKT:u_PlI'nKT:u_P",
                    updatedLine);
            updatedLine = updatedLinesIter.next();
            assertEquals("cc.password.isencrypted=true", updatedLine);
        } else if (origLine.startsWith("protex.password=")) {
            assertEquals(
                    "protex.password=DQp'L-+/0Fq0jsi2f'\\\\OlI'nKT:u_PlI'nKT:u_PlI'nKT:u_PlI'nKT:u_PlI'nKT:u_PlI'nKT:u_P",
                    updatedLine);
            updatedLine = updatedLinesIter.next();
            assertEquals("protex.password.isencrypted=true", updatedLine);
        } else if (origLine.startsWith("connector.0.password=")) {
            assertEquals(
                    "connector.0.password=6'ND2^gdVX/0\\$fYH7TeH04Sh8FAG<\\[lI'nKT:u_PlI'nKT:u_PlI'nKT:u_PlI'nKT:u_PlI'nKT:u_P",
                    updatedLine);
            updatedLine = updatedLinesIter.next();
            assertEquals("connector.0.password.isencrypted=true", updatedLine);
        } else {
            assertEquals(origLine, updatedLine);
        }
    }

    final File testGeneratedUpdatedFile = File.createTempFile(
            "com.blackducksoftware.tools.commonframework.core.config.ConfigurationFileTest",
            "test1_testGeneratedUpdatedFile");
    filesToDelete.add(testGeneratedUpdatedFile);
    testGeneratedUpdatedFile.deleteOnExit();
    FileUtils.writeLines(testGeneratedUpdatedFile, updatedLines);
    final long csumTestGeneratedFile = FileUtils.checksum(testGeneratedUpdatedFile, new CRC32()).getValue();
    final long csumActualFile = FileUtils.checksum(configFile, new CRC32()).getValue();
    assertEquals(csumTestGeneratedFile, csumActualFile);
}

---

From source file:com.taobao.android.builder.tasks.helper.AtlasListTask.java

@TaskAction
public void executeTask() {

    Project project = getProject();//from  w  w  w .ja  va  2 s  . co  m

    AtlasExtension atlasExtension = project.getExtensions().getByType(AtlasExtension.class);

    List<AtlasConfigField> list = null;
    try {
        list = AtlasConfigHelper.readConfig(atlasExtension, "atlas");
    } catch (Throwable e) {
        e.printStackTrace();
        return;
    }

    List<String> lines = new ArrayList<>();
    lines.add("   | ??? |   |  ");
    lines.add(" ------------- | ------------- | ------------- | ------------- ");

    for (AtlasConfigField configField : list) {
        lines.add(configField.desc + "  | " + configField.name + " | " + configField.type + "  | "
                + configField.value);
    }

    for (String line : lines) {
        project.getLogger().error(line);
    }

    File file = new File(project.getProjectDir(), "atlasConfigList.MD");

    try {
        FileUtils.writeLines(file, lines);
        project.getLogger().error(file.getAbsolutePath() + " has generated");
    } catch (IOException e) {
        e.printStackTrace();
    }

    try {
        FileUtils.write(new File(project.getProjectDir(), "atlasConfigList.json"),
                JSON.toJSONString(list, true));
    } catch (IOException e) {
        e.printStackTrace();
    }

}

---

From source file:com.inmobi.grill.driver.hive.TestRemoteHiveDriver.java

private void createPartitionedTable(String tableName, int partitions) throws Exception {
    conf.setBoolean(GrillConfConstants.GRILL_ADD_INSERT_OVEWRITE, false);
    conf.setBoolean(GrillConfConstants.GRILL_PERSISTENT_RESULT_SET, false);

    QueryContext ctx = new QueryContext("CREATE EXTERNAL TABLE IF NOT EXISTS " + tableName
            + " (ID STRING) PARTITIONED BY (DT STRING, ET STRING)", null, conf);

    driver.execute(ctx);// w  w  w . j  ava  2s .  c  o  m
    Assert.assertEquals(0, driver.getHiveHandleSize());

    File dataDir = new File("target/partdata");
    dataDir.mkdir();

    // Add partitions
    for (int i = 0; i < partitions; i++) {
        // Create partition paths
        File tableDir = new File(dataDir, tableName);
        tableDir.mkdir();
        File partDir = new File(tableDir, "p" + i);
        partDir.mkdir();

        // Create data file
        File data = new File(partDir, "data.txt");
        FileUtils.writeLines(data, Arrays.asList("one", "two", "three", "four", "five"));

        System.out.println("@@ Adding partition " + i);
        QueryContext partCtx = new QueryContext("ALTER TABLE " + tableName
                + " ADD IF NOT EXISTS PARTITION (DT='p" + i + "', ET='1') LOCATION '" + partDir.getPath() + "'",
                null, conf);
        driver.execute(partCtx);
    }
}

---

From source file:com.taobao.android.builder.tasks.app.prepare.PrepareBundleInfoTask.java

private void generateBundleListCfg(AppVariantContext appVariantContext) throws IOException {
    List<String> bundleLists = AtlasBuildContext.awbBundleMap.values().stream()
            .filter(awbBundle -> !awbBundle.isMBundle).map(awbBundle -> {
                return appVariantOutputContext.getAwbPackageOutputFilePath(awbBundle);
            }).sorted().collect(Collectors.toList());
    File outputFile = new File(appVariantContext.getScope().getGlobalScope().getOutputsDir(), "bundleList.cfg");
    FileUtils.deleteQuietly(outputFile);
    outputFile.getParentFile().mkdirs();
    FileUtils.writeLines(outputFile, bundleLists);

    appVariantContext.bundleListCfg = outputFile;
    //Set the bundle dependencies

    List<BundleInfo> bundleInfos = new ArrayList<>();
    AtlasBuildContext.awbBundleMap.values().stream()
            .forEach(awbBundle -> bundleInfos.add(awbBundle.bundleInfo));

}

---

From source file:com.alibaba.jstorm.hdfs.transaction.RocksDbHdfsState.java

@Override
public String backup(long batchId) {
    try {/*  w  w  w.ja v a2s .  co m*/
        String hdfsCpDir = getRemoteCheckpointPath(batchId);
        String batchCpPath = getLocalCheckpointPath(batchId);
        long startTime = System.currentTimeMillis();

        // upload sst data files to hdfs
        Collection<File> sstFiles = FileUtils.listFiles(new File(batchCpPath),
                new String[] { ROCKSDB_DATA_FILE_EXT }, false);
        for (File sstFile : sstFiles) {
            if (!lastCheckpointFiles.contains(sstFile.getName())) {
                hdfsCache.copyToDfs(batchCpPath + "/" + sstFile.getName(), hdfsDbDir, true);
            }
        }

        // upload sstFile.list, CURRENT, MANIFEST to hdfs
        Collection<String> sstFileList = getFileList(sstFiles);
        File cpFileList = new File(batchCpPath + "/" + SST_FILE_LIST);
        FileUtils.writeLines(cpFileList, sstFileList);

        if (hdfsCache.exist(hdfsCpDir))
            hdfsCache.remove(hdfsCpDir, true);

        hdfsCache.mkdir(hdfsCpDir);
        Collection<File> allFiles = FileUtils.listFiles(new File(batchCpPath), null, false);
        allFiles.removeAll(sstFiles);
        Collection<File> nonSstFiles = allFiles;
        for (File nonSstFile : nonSstFiles) {
            hdfsCache.copyToDfs(batchCpPath + "/" + nonSstFile.getName(), hdfsCpDir, true);
        }

        if (JStormMetrics.enabled)
            hdfsWriteLatency.update(System.currentTimeMillis() - startTime);
        lastCheckpointFiles = sstFileList;
        return hdfsCpDir;
    } catch (IOException e) {
        LOG.error("Failed to upload checkpoint", e);
        throw new RuntimeException(e.getMessage());
    }
}

---

From source file:com.izforge.izpack.compiler.packager.impl.PackagerBase.java

/**
 * Write manifest in the install jar.//from w w  w.  j  a v  a2 s  . c  o m
 *
 * @throws IOException for any I/O error
 */
protected void writeManifest() throws IOException {
    // Add splash screen configuration
    List<String> lines = IOUtils.readLines(getClass().getResourceAsStream("MANIFEST.MF"));
    if (splashScreenImage != null) {
        String destination = String.format("META-INF/%s", splashScreenImage.getName());
        mergeManager.addResourceToMerge(splashScreenImage.getAbsolutePath(), destination);
        lines.add(String.format("SplashScreen-Image: %s", destination));
    }
    lines.add("");
    File tempManifest = com.izforge.izpack.util.file.FileUtils.createTempFile("MANIFEST", ".MF");
    FileUtils.writeLines(tempManifest, lines);
    mergeManager.addResourceToMerge(tempManifest.getAbsolutePath(), "META-INF/MANIFEST.MF");
}

---

From source file:io.seqware.pipeline.plugins.WorkflowSchedulerTest.java

@Test
public void testLeftToRightOverrideByCLI() throws IOException {
    String[] iniFileContents1 = { "min_qual_score=30", "min_percent_bases=90", "cat=dog" };
    String[] iniFileContents2 = { "min_qual_score=40", "min_percent_bases=100" };
    String[] iniFileContents3 = { "min_qual_score=50" };
    File ini1 = File.createTempFile("ini", "ini");
    File ini2 = File.createTempFile("ini", "ini");
    File ini3 = File.createTempFile("ini", "ini");
    ini1.deleteOnExit();// w w w  .j  av a2 s . c o m
    ini2.deleteOnExit();
    ini3.deleteOnExit();
    FileUtils.writeLines(ini1, Arrays.asList(iniFileContents1));
    FileUtils.writeLines(ini2, Arrays.asList(iniFileContents2));
    FileUtils.writeLines(ini3, Arrays.asList(iniFileContents3));

    launchPlugin("--workflow-accession", "2861", "--host", FileTools.getLocalhost(null).hostname, "--ini-files",
            ini1.getAbsolutePath() + "," + ini2.getAbsolutePath() + "," + ini3.getAbsolutePath(), "--",
            "--output_dir", "zebra", "--min_qual_score", "0");

    String s = getOut();
    String firstWorkflowRun = getAndCheckSwid(s);

    BasicTestDatabaseCreator dbCreator = new BasicTestDatabaseCreator();
    List<Object[]> runQuery = dbCreator.runQuery(new ArrayListHandler(),
            "select r.status, r.workflow_id, r.ini_file from workflow_run r\n" + "WHERE \n"
                    + "r.sw_accession = ?\n" + "; ",
            Integer.valueOf(firstWorkflowRun));
    Assert.assertTrue(
            "schedule workflow is incorrect " + runQuery.get(0)[0].toString() + " "
                    + runQuery.get(0)[1].toString(),
            runQuery.get(0)[0].equals(WorkflowRunStatus.submitted.toString()) && runQuery.get(0)[1].equals(16));
    WorkflowRun workflowRun = metadata.getWorkflowRun(Integer.valueOf(firstWorkflowRun));
    // check that default keys are present
    Map<String, String> baseMap = MapTools.iniString2Map(workflowRun.getIniFile());
    Assert.assertTrue("overridden map is missing variables",
            baseMap.containsKey("min_qual_score") && baseMap.containsKey("inputs_read_1")
                    && baseMap.containsKey("inputs_read_2") && baseMap.containsKey("cat")
                    && baseMap.containsKey("output_prefix") && baseMap.containsKey("output_dir")
                    && baseMap.containsKey("min_percent_bases"));
    Assert.assertTrue("overridden map has incorrect values",
            baseMap.get("min_qual_score").equals("0") && baseMap.get("cat").equals("dog")
                    && baseMap.get("min_percent_bases").equals("100")
                    && baseMap.get("output_dir").equals("zebra"));
}

---

From source file:es.uvigo.ei.sing.adops.operations.running.ExecuteExperimentBySteps.java

private void replaceSequenceNamesAln(File inputFile, File outputFile) throws IOException {
    final Map<String, String> names = this.experiment.getNames();
    final List<String> lines = FileUtils.readLines(inputFile);

    int maxLength = Integer.MIN_VALUE;
    for (Map.Entry<String, String> name : names.entrySet()) {
        maxLength = Math.max(maxLength, name.getValue().length());
    }//from  w  w w .  j  a v a  2s  .c o  m

    for (Map.Entry<String, String> name : names.entrySet()) {
        String newName = name.getValue();

        while (newName.length() < maxLength) {
            newName += ' ';
        }

        name.setValue(newName);
    }

    final ListIterator<String> itLines = lines.listIterator();
    if (itLines.hasNext())
        itLines.next();

    // TODO Review parsing
    while (itLines.hasNext()) {
        itLines.next(); // White line

        String line = null;
        // Sequences
        while (itLines.hasNext()) {
            line = itLines.next();
            if (line.isEmpty())
                break;
            final String[] lineSplit = line.split("\\s+");
            final String name = lineSplit.length == 0 ? "" : lineSplit[0];

            if (names.get(name) == null)
                break;

            itLines.set(names.get(name) + "   " + lineSplit[1]);
        }

        // Marks line
        if (line != null && !line.isEmpty() && line.startsWith(" ")) {
            String newLine = line;

            if (maxLength < 13)
                newLine = newLine.substring(13 - maxLength);
            else
                for (int i = 16; i < maxLength + 3; i++) {
                    newLine = ' ' + newLine;
                }

            itLines.set(newLine);
        }
    }

    FileUtils.writeLines(outputFile, lines);
}

---

From source file:com.taobao.android.builder.tasks.app.bundle.AwbProguardConfiguration.java

/**
 * ?proguardconfig//from w  w w  . j  ava2s.  c  o m
 *
 * @param outConfigFile
 */
public void printConfigFile(File outConfigFile) throws IOException {
    List<String> configs = Lists.newArrayList();
    //awblib??proguardpredex
    for (AwbTransform awbTransform : awbTransforms) {

        List<File> inputLibraries = Lists.newArrayList();

        String name = awbTransform.getAwbBundle().getName();
        File obuscateDir = new File(awbObfuscatedDir, awbTransform.getAwbBundle().getName());
        obuscateDir.mkdirs();

        //            configs.add();
        if (null != awbTransform.getInputDir() && awbTransform.getInputDir().exists()) {
            configs.add(INJARS_OPTION + " " + awbTransform.getInputDir().getAbsolutePath());
            File obsJar = new File(obuscateDir, "inputdir_" + OBUSCATED_JAR);
            inputLibraries.add(obsJar);
            configs.add(OUTJARS_OPTION + " " + obsJar.getAbsolutePath());
        }

        Set<String> classNames = new HashSet<>();
        for (File inputLibrary : awbTransform.getInputLibraries()) {
            configs.add(INJARS_OPTION + " " + inputLibrary.getAbsolutePath());

            String fileName = inputLibrary.getName();

            if (classNames.contains(fileName)) {
                fileName = "a" + classNames.size() + "_" + fileName;
            }

            classNames.add(fileName);

            File obsJar = new File(obuscateDir, fileName);

            inputLibraries.add(obsJar);
            configs.add(OUTJARS_OPTION + " " + obsJar.getAbsolutePath());
        }
        //            configs.add();

        awbTransform.setInputFiles(inputLibraries);
        awbTransform.setInputDir(null);
        awbTransform.getInputLibraries().clear();
        appVariantOutputContext.getAwbTransformMap().put(name, awbTransform);
    }
    FileUtils.writeLines(outConfigFile, configs);
}

---

• «
• 1
• 2
• 3
• 4
• 5
• 6
• 7
• 8
• 9
• 10
• 11
• 12
• 13
• 14
• 15
• 16
• 17
• 18
• 19
• 20
• 21
• 22
• 23
• 24
• 25
• 26
• 27
• 28
• 29
• 30
• 31
• 32
• »