Example usage for org.apache.commons.io.input ReaderInputStream ReaderInputStream

Introduction

In this page you can find the example usage for org.apache.commons.io.input ReaderInputStream ReaderInputStream.

Prototype

public ReaderInputStream(Reader reader) 

Source Link

Document

Construct a new ReaderInputStream that uses the default character encoding with a default input buffer size of 1024 characters.

Usage

From source file:org.strasa.web.updatestudy.view.RawDataView.java

@NotifyChange("*")
@Command("uploadCSV")
public void uploadCSV(@ContextParam(ContextType.BIND_CONTEXT) BindContext ctx,
        @ContextParam(ContextType.VIEW) Component view) {

    UploadEvent event = (UploadEvent) ctx.getTriggerEvent();

    // System.out.println(event.getMedia().getStringData());

    String name = event.getMedia().getName();
    if (tempFile == null)
        try {/*from w w  w .j av a2 s  . c o m*/
            tempFile = File.createTempFile(name, ".tmp");
        } catch (IOException e1) {
            // TODO Auto-generated catch block
            e1.printStackTrace();
        }

    if (!name.endsWith(".csv")) {
        Messagebox.show("Error: File must be a text-based csv format", "Upload Error", Messagebox.OK,
                Messagebox.ERROR);
        return;
    }

    InputStream in = event.getMedia().isBinary() ? event.getMedia().getStreamData()
            : new ReaderInputStream(event.getMedia().getReaderData());
    FileUtilities.uploadFile(tempFile.getAbsolutePath(), in);
    BindUtils.postNotifyChange(null, null, this, "*");

    ArrayList<String> invalidHeader = new ArrayList<String>();
    boolean isHeaderValid = true;
    try {
        StudyVariableManagerImpl studyVarMan = new StudyVariableManagerImpl();
        CSVReader reader = new CSVReader(new FileReader(tempFile.getAbsolutePath()));
        String[] header = reader.readNext();
        for (String column : header) {
            if (!studyVarMan.hasVariable(column)) {
                invalidHeader.add(column);
                isHeaderValid = false;
            }
        }
        List<String[]> dataPrep = reader.readAll();
        dataPrep.remove(0);
        if (!new StudyManagerImpl().validateCSVDataForGermplasmComparision(this.studyID, dataPrep, 0,
                this.isRaw)) {
            Map<String, Object> arguments = new HashMap<String, Object>();
            arguments.put("list", new StudyManagerImpl().getUnknownGermplasmFromCSVData(this.studyID, dataPrep,
                    0, this.isRaw));

            String template = "/user/updatestudy/validategermplasmbox.zul";
            Window window = (Window) Executions.createComponents(template, null, arguments);
            window.doModal();
        }
        ;
        System.out.println(invalidHeader.size());

    } catch (FileNotFoundException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    } catch (IOException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }

    isVariableDataVisible = true;
    dataFileName = name;
    if (!isHeaderValid)
        openCSVHeaderValidator(tempFile.getAbsolutePath(), false);
    else {
        refreshCsv();
        if (this.isUpdateMode)
            isNewDataSet = true;

    }

}

---

From source file:org.strasa.web.uploadstudy.view.model.StudyGermplasmInfo.java

@NotifyChange({ "lstStudyGermplasm", "lstKnownGermplasm" })
@Command("uploadGenotypeData")
public void uploadGenotypeData(@ContextParam(ContextType.BIND_CONTEXT) BindContext ctx,
        @ContextParam(ContextType.VIEW) Component view) {

    UploadEvent event = (UploadEvent) ctx.getTriggerEvent();

    // System.out.println(event.getMedia().getStringData());

    String name = event.getMedia().getName();
    if (!name.endsWith(".csv")) {
        Messagebox.show("Error: File must be a text-based CSV  format", "Upload Error", Messagebox.OK,
                Messagebox.ERROR);//from   w  w  w  .j  a  v a 2  s . c  o  m
        return;
    }

    try {
        String filename = name + Encryptions.encryptStringToNumber(name, new Date().getTime());
        File tempGenoFile = File.createTempFile(filename, ".tmp");
        InputStream in = event.getMedia().isBinary() ? event.getMedia().getStreamData()
                : new ReaderInputStream(event.getMedia().getReaderData());
        FileUtilities.uploadFile(tempGenoFile.getAbsolutePath(), in);
        List<GermplasmExt> lstGermplasm = CSVToBean(tempGenoFile);
        for (GermplasmExt germData : lstGermplasm) {
            if (!StringUtils.isNullOrEmpty(germData.getGermplasmname())) {
                if (lstStudyGermplasm.containsKey(germData.getGermplasmname())) {
                    lstStudyGermplasm.get(germData.getGermplasmname())
                            .setGermplasmtypeid(getGermplasmTypeById(germData.getGermplasmtype()));
                    lstStudyGermplasm.get(germData.getGermplasmname()).setValueFromeGermplasmEx(germData,
                            lstGermplasmType);
                    lstStudyGermplasm.get(germData.getGermplasmname()).setGermplasmExCharacteristic(germData);

                }
            }
        }
    } catch (IOException e1) {
        // TODO Auto-generated catch block
        e1.printStackTrace();
    }

}

---

From source file:org.strasa.web.uploadstudy.view.model.UploadData.java

@NotifyChange("*")
@Command("uploadCSV")
public void uploadCSV(@ContextParam(ContextType.BIND_CONTEXT) BindContext ctx,
        @ContextParam(ContextType.VIEW) Component view) {

    UploadEvent event = (UploadEvent) ctx.getTriggerEvent();

    // System.out.println(event.getMedia().getStringData());

    String name = event.getMedia().getName();
    if (tempFile == null)
        try {/*w w w  .ja v  a 2s  .co m*/
            tempFile = File.createTempFile(name, ".tmp");
        } catch (IOException e1) {
            // TODO Auto-generated catch block
            e1.printStackTrace();
        }

    if (!name.endsWith(".csv")) {
        Messagebox.show("Error: File must be a text-based csv format", "Upload Error", Messagebox.OK,
                Messagebox.ERROR);
        return;
    }

    InputStream in = event.getMedia().isBinary() ? event.getMedia().getStreamData()
            : new ReaderInputStream(event.getMedia().getReaderData());
    FileUtilities.uploadFile(tempFile.getAbsolutePath(), in);
    BindUtils.postNotifyChange(null, null, this, "*");

    ArrayList<String> invalidHeader = new ArrayList<String>();
    boolean isHeaderValid = true;
    try {
        StudyVariableManagerImpl studyVarMan = new StudyVariableManagerImpl();
        CSVReader reader = new CSVReader(new FileReader(tempFile.getAbsolutePath()));
        String[] header = reader.readNext();
        for (String column : header) {
            if (!studyVarMan.hasVariable(column)) {
                invalidHeader.add(column);
                isHeaderValid = false;
            }
        }
        System.out.println("invalidHeader size " + invalidHeader.size());
    } catch (FileNotFoundException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    } catch (IOException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
    }

    isVariableDataVisible = true;
    dataFileName = name;
    if (!isHeaderValid)
        openCSVHeaderValidator(tempFile.getAbsolutePath(), false);
    else {
        refreshCsv();
        if (this.isUpdateMode)
            isNewDataset = true;

    }

}

---

From source file:org.unigram.docvalidator.DocumentValidatorTest.java

private DocumentValidator getDocumentValidator() throws DocumentValidatorException {
    ValidatorConfiguration validatorConfig = ValidationConfigurationLoader
            .loadConfiguration(new ReaderInputStream(new StringReader("<?xml version=\"1.0\"?>\n"
                    + "<component name=\"Validator\">" + "  <component name=\"SentenceIterator\">"
                    + "    <component name=\"SentenceLength\">\n"
                    + "      <property name=\"max_length\" value=\"5\"/>\n" + "    </component>"
                    + "  </component>" + "</component>")));

    Configuration configuration = new Configuration(validatorConfig);

    return new DocumentValidator.Builder().setConfiguration(configuration).build();
}

---

From source file:org.wso2.carbon.registry.app.RemoteRegistry.java

private void restore(String path, Reader reader, AbderaClient abderaClient) throws RegistryException {
    InputStream is = new ReaderInputStream(reader);
    ClientResponse resp = abderaClient.post(
            baseURI + APPConstants.ATOM//w  w w  .j a  va2 s. c  o m
                    + encodeURL(path + RegistryConstants.URL_SEPARATOR + APPConstants.PARAMETER_DUMP),
            is, getAuthorization());

    if (resp.getType() == Response.ResponseType.SUCCESS) {
        if (log.isDebugEnabled()) {
            log.debug("resource dump restored at " + path);
        }
    } else {
        String msg = "Restoring to " + path + " failed.";
        log.error(msg);
        throw new RegistryException(msg);
    }
}

---

From source file:org.zanata.adapter.glossary.GlossaryPoReader.java

@Override
public Map<LocaleId, List<GlossaryEntry>> extractGlossary(Reader reader, String qualifiedName)
        throws IOException {
    ReaderInputStream ris = new ReaderInputStream(reader);
    try {/*from www . j ava2 s .com*/
        InputSource potInputSource = new InputSource(ris);
        potInputSource.setEncoding("utf8");
        return extractTemplate(potInputSource, qualifiedName);
    } finally {
        ris.close();
    }
}

---

From source file:pl.nask.hsn2.framework.commands.WorkflowUploadRequestCmd.java

@Override
public Operation execute(CommandContext<WorkflowUploadRequest> context) throws CommandExecutionException {

    try {// ww  w  . j  a v a 2  s .c o m
        String id = WorkflowManager.getInstance().uploadWorkflow(context.getSourceOperation().getName(),
                new ReaderInputStream(new StringReader(context.getSourceOperation().getContent())),
                context.getSourceOperation().isOverride());
        return new WorkflowUploadReply(id);
    } catch (Exception e) {
        return new WorkflowError(e.toString());
    }
}

---

From source file:pl.nask.hsn2.framwework.workflow.repository.GitRepositoryTest.java

@Test
public void saveNewWorkflow() throws WorkflowRepoException {
    LOGGER.info("saving workflow...");
    StringReader reader = new StringReader(testInput);
    InputStream is = new ReaderInputStream(reader);
    repo.saveWorkflow(WORKFLOW_NAME, is);
    Assert.assertTrue(fileExists(WORKFLOW_NAME));
}

---

From source file:pl.nask.hsn2.framwework.workflow.repository.GitRepositoryTest.java

@Test(dependsOnMethods = "saveNewWorkflow")
public void updateNewWorkflow() throws WorkflowRepoException, InterruptedException {
    LOGGER.info("updating workflow...");
    StringReader reader = new StringReader(testInput2);
    InputStream is = new ReaderInputStream(reader);
    repo.saveWorkflow(WORKFLOW_NAME, is);
    Assert.assertTrue(fileExists(WORKFLOW_NAME));
}

---

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