List of usage examples for org.apache.commons.lang BooleanUtils toStringYesNo
public static String toStringYesNo(boolean bool)
Converts a boolean to a String returning 'yes' or 'no'.
BooleanUtils.toStringYesNo(true) = "yes" BooleanUtils.toStringYesNo(false) = "no"
From source file:com.facultyshowcase.app.ui.UIUtil.java
public static void writeProperty(EntityUtilWriter writer, String htmlClass, String label, boolean bool) { writeContainerBeginning(writer, htmlClass); writeLabel(writer, htmlClass, label); writer.append("<span "); writer.appendEscapedAttribute(CLASS, CmsHTMLClassNames.convertClassName(PROP + " " + htmlClass)); writer.append(">"); writer.appendEscapedData(BooleanUtils.toStringYesNo(bool)); writer.append("</span>"); writeContainerEnd(writer);/*from w ww . ja v a 2 s . co m*/ }
From source file:edu.cornell.med.icb.goby.modes.AbstractCommandLineMode.java
/** * Print the usage for a mode in the format appropriate for a * <a href="http://www.wikimedia.org/">Wikimedia</a> table. * * @param jsap The parameters for the mode */// w w w .ja v a 2 s. c o m public void printUsageAsWikiTable(final JSAP jsap) { final PrintStream stream = System.out; // Table definition/header stream.println( "{| class=\"wikitable\" style=\"margin: 1em auto 1em auto; background:#efefef;\" valign=\"top\" align=\"center\" border=\"1\" cellpadding=\"5\" width=\"80%\""); stream.println("|- valign=\"bottom\" align=\"left\" style=\"background:#ffdead;\""); stream.println("!width=\"15%\"| Flag"); stream.println("!width=\"10%\" | Arguments"); stream.println("!width=\"5%\"| Required"); stream.println("! Description"); stream.println(); // iterate through help entries for the mode final IDMap idMap = jsap.getIDMap(); final Iterator iterator = idMap.idIterator(); while (iterator.hasNext()) { final String id = (String) iterator.next(); if (!"mode".equals(id) && !isJSAPHelpId(id)) { // skip the mode and help ids final Parameter parameter = jsap.getByID(id); stream.println("|- valign=\"top\" align=\"left\""); stream.print("| <nowiki>"); if (parameter instanceof Flagged) { final Flagged flagged = (Flagged) parameter; final Character characterFlag = flagged.getShortFlagCharacter(); final String longFlag = flagged.getLongFlag(); if (characterFlag != null && StringUtils.isNotBlank(longFlag)) { stream.print("(-" + characterFlag + "|--" + longFlag + ")"); } else if (characterFlag != null) { stream.print("-" + characterFlag); } else if (StringUtils.isNotBlank(longFlag)) { stream.print("--" + longFlag); } } else { stream.print("n/a"); } stream.println("</nowiki>"); stream.print("| "); if (parameter instanceof Switch) { stream.println("n/a"); } else { stream.println(id); } final boolean required; if (parameter instanceof Option) { final Option option = (Option) parameter; required = option.required(); } else { required = !(parameter instanceof Switch); } stream.println("| " + BooleanUtils.toStringYesNo(required)); stream.println("| " + parameter.getHelp()); if (parameter.getDefault() != null) { stream.print("Default value: "); for (final String defaultValue : parameter.getDefault()) { stream.print(" "); stream.print(defaultValue); } } stream.println(); } } // table close stream.println("|}"); }
From source file:com.adaptris.core.ftp.SftpConnectionTest.java
public static File createOpenSshConfig(boolean strict) throws Exception { File tempDir = new File(PROPERTIES.getProperty(CFG_TEMP_HOSTS_FILE)); tempDir.mkdirs();//from w w w.jav a 2 s .c o m File tempFile = File.createTempFile(SftpConnectionTest.class.getSimpleName(), "", tempDir); try (PrintStream out = new PrintStream(new FileOutputStream(tempFile))) { out.println("Host *"); out.println(" StrictHostKeyChecking " + BooleanUtils.toStringYesNo(strict)); out.println(" " + SftpClient.SSH_PREFERRED_AUTHENTICATIONS + " " + SftpClient.NO_KERBEROS_AUTH); } return tempFile; }
From source file:edu.cornell.med.icb.goby.modes.AbstractCommandLineMode.java
/** * Print the usage for a mode in the format appropriate for a table in HTML. * * @param jsap The parameters for the mode *//*from w w w.j a v a 2s .c o m*/ public void printUsageAsHtmlTable(final JSAP jsap) { final PrintStream writer = System.out; // Table definition/header writer.println("<table style=\"background: #efefef;\" border=\"1\" cellpadding=\"5\">"); writer.println("<tbody>"); writer.println("<tr style=\"background: #ffdead;\" align=\"left\" valign=\"bottom\">"); writer.println("<th style=\"width: 15%\">Flag</th>"); writer.println("<th style=\"width: 10%\">Arguments</th>"); writer.println("<th style=\"width: 5%\">Required</th>"); writer.println("<th>Description</th>"); writer.println("</tr>"); // iterate through help entries for the mode final IDMap idMap = jsap.getIDMap(); final Iterator iterator = idMap.idIterator(); while (iterator.hasNext()) { final String id = (String) iterator.next(); if (!"mode".equals(id) && !isJSAPHelpId(id)) { // skip the mode and help ids final Parameter parameter = jsap.getByID(id); writer.println("<tr align=\"left\" valign=\"top\">"); writer.print("<td><code>"); if (parameter instanceof Flagged) { final Flagged flagged = (Flagged) parameter; final Character characterFlag = flagged.getShortFlagCharacter(); final String longFlag = flagged.getLongFlag(); if (characterFlag != null && StringUtils.isNotBlank(longFlag)) { writer.print("(-" + characterFlag + "|--" + longFlag + ")"); } else if (characterFlag != null) { writer.print("-" + characterFlag); } else if (StringUtils.isNotBlank(longFlag)) { writer.print("--" + longFlag); } } else { writer.print("n/a"); } writer.println("</code></td>"); writer.print("<td>"); if (parameter instanceof Switch) { writer.print("n/a"); } else { writer.print(id); } writer.println("</td>"); final boolean required; if (parameter instanceof Option) { final Option option = (Option) parameter; required = option.required(); } else { required = !(parameter instanceof Switch); } writer.println("<td>" + BooleanUtils.toStringYesNo(required) + "</td>"); writer.print("<td>"); // convert any strange characters to html codes final String htmlHelpString = StringEscapeUtils.escapeHtml(parameter.getHelp()); // and also convert "-" to the hyphen character code writer.print(StringUtils.replace(htmlHelpString, "-", "-")); if (parameter.getDefault() != null) { writer.print(" Default value: "); for (final String defaultValue : parameter.getDefault()) { writer.print(" "); writer.print(StringUtils.replace(defaultValue, "-", "-")); } } writer.println("</td>"); writer.println("</tr>"); } } // table close writer.println("</tbody>"); writer.println("</table>"); }
From source file:com.facultyshowcase.app.ui.ProfessorProfileViewer.java
@Override public void init() { // Make sure you call super.init() at the top of this method. /// See the Javadoc for #init() for more information about what it does. super.init(); // Set HTML element type and class names for presentation use on this Container component. setHTMLElement(HTMLElement.section); addClassName("user-profile-viewer"); // property_viewer is a standard class name. addClassName(UIUtil.PROP + "erty-viewer"); // Add microdata for programmatic / SEO use /// OR use RDFa support /// You typically only do this in viewers - not editors. setAttribute("itemscope", ""); setAttribute("itemtype", "http://schema.org/Person"); // setAttribute allows you to set any attribute as long as it will not interfere with a component's /// native HTML. For example, you cannot set the "value" attribute on a Field since /// it uses that attribute. // It's a good idea to *not* mark variables final that you don't want in the scope of event listeners. /// Hibernate/JPA entities are a great example of this pattern. You always need to re-attach /// entities before using them, so we should always call getProfessorProfile() in the context /// of handling an event. Note: our getProfessorProfile() method re-attaches the entity. ProfessorProfile ProfessorProfile = getProfessorProfile(); Name name = ProfessorProfile.getName(); // You can use a Field for displaying non-internationalized content. /// It is desirable to do this since you don't need to create a LocalizedText. /// However, you cannot change the HTMLElement of a Field at this time, /// so some of the following code uses a Label which does allow /// specification of the HTMLElement. final Field slug = new Field(ProfessorProfile.getSlug(), false); final Field namePrefix = new Field(name.getFormOfAddress(), false); final Field nameGiven = new Field(name.getFirst(), false); final Field nameFamily = new Field(name.getLast(), false); final Field nameSuffix = new Field(name.getSuffix(), false); // Sometimes it is easier and less error prone to make a component non-visible /// than checking for null on each use. Use this pattern with care. You don't /// want to consume a lot of resource unnecessarily. if (StringFactory.isEmptyString(namePrefix.getText())) namePrefix.setVisible(false);// w ww . ja v a2 s . com if (StringFactory.isEmptyString(nameSuffix.getText())) nameSuffix.setVisible(false); // Address Address address = ProfessorProfile.getPostalAddress(); // Address lines are always on their own line so we make sure they are enclosed by a block element like a DIV.. final Label addressLine1 = new Label(); addressLine1.setHTMLElement(HTMLElement.div).addClassName(UIUtil.PROP).addClassName(UIUtil.ADDRESS_LINE); final Label addressLine2 = new Label(); addressLine2.setHTMLElement(HTMLElement.div).addClassName(UIUtil.PROP).addClassName(UIUtil.ADDRESS_LINE); if (address.getAddressLines().length > 0) addressLine1.setText(TextSources.create(address.getAddressLines()[0])); if (address.getAddressLines().length > 1) addressLine2.setText(TextSources.create(address.getAddressLines()[1])); final HTMLComponent city = new HTMLComponent(); // The "prop" class name is part of the standard HTML structure. It is always a good idea to also /// add a specific class name like "city" in this example. Please be consistent when using class names. /// For example, if everyone else is using "city", please use "city" too. Don't come up with another class name /// that means something similar like "town" or "locality". Consistency has a big impact on /// the time required to style HTML as well as the ability to reuse CSS. city.setHTMLElement(HTMLElement.span).addClassName(UIUtil.PROP).addClassName(UIUtil.CITY); if (!StringFactory.isEmptyString(address.getCity())) { // Our microdata for the city shouldn't include the comma, so this is a bit more complicated than the other examples. city.setText(TextSources.create("<span item" + UIUtil.PROP + "=\"" + UIUtil.ADDRESS + "Locality\">" + address.getCity() + "</span><span class=\"delimiter\">,</span>")); } else city.setVisible(false); final Label state = new Label(TextSources.create(address.getState())); state.addClassName(UIUtil.PROP).addClassName(UIUtil.STATE); final Label postalCode = new Label(TextSources.create(address.getPostalCode())); postalCode.addClassName(UIUtil.PROP).addClassName(UIUtil.POSTAL_CODE); // Other Contact final Field phoneNumber = new Field(ProfessorProfile.getPhoneNumber(), false); final Field emailAddress = new Field(ProfessorProfile.getEmailAddress(), false); // Social Contact final URILink twitterLink = ProfessorProfile.getTwitterLink() != null ? new URILink(_ProfessorProfileDAO.toURI(ProfessorProfile.getTwitterLink(), null)) : null; final URILink facebookLink = ProfessorProfile.getFacebookLink() != null ? new URILink(_ProfessorProfileDAO.toURI(ProfessorProfile.getFacebookLink(), null)) : null; final URILink linkedInLink = ProfessorProfile.getLinkedInLink() != null ? new URILink(_ProfessorProfileDAO.toURI(ProfessorProfile.getLinkedInLink(), null)) : null; // We are going to output HTML received from the outside, so we need to sanitize it first for security reasons. /// Sometimes you'll do this sanitation prior to persisting the data. It depends on whether or not you need to /// keep the original unsanitized HTML around. final HTMLComponent aboutMeProse = new HTMLComponent( UIUtil.scrubHtml(ProfessorProfile.getAboutMeProse(), Event.getRequest(), Event.getResponse())); Component aboutMeVideo = null; URL videoLink = ProfessorProfile.getAboutMeVideoLink(); if (videoLink != null) { // There are several ways to link to media (Youtube video URL, Vimeo video URL, Flickr URL, internally hosted media file, etc). /// You can link to it. /// You can embed it. See http://oembed.com/ for a common protocol for doing this. /// If the link is to the media itself, you can create a player for it. /// Below is an example of creating a link to the video as well as a player. final URI videoLinkURI = _ProfessorProfileDAO.toURI(videoLink, null); URILink videoLinkComponent = new URILink(videoLinkURI, TextSources.create("My Video")); videoLinkComponent.setTarget("_blank"); IMediaUtility util = MediaUtilityFactory.getUtility(); try { // Check if we can parse the media and it has a stream we like. /// In our made up example, we're only accepting H.264 video. We don't care about the audio in this example. IMediaMetaData mmd; if (util.isEnabled() && videoLinkURI != null && (mmd = util.getMetaData(videoLinkURI.toString())).getStreams().length > 0) { int width = 853, height = 480; // 480p default boolean hasVideo = false; for (IMediaStream stream : mmd.getStreams()) { if (stream.getCodec().getType() == ICodec.Type.video && "H264".equals(stream.getCodec().name())) { hasVideo = true; if (stream.getWidth() > 0) { width = stream.getWidth(); height = stream.getHeight(); } break; } } if (hasVideo) { Media component = new Media(); component.setMediaType(Media.MediaType.video); component.addSource(new MediaSource(videoLinkURI)); component.setFallbackContent(videoLinkComponent); component.setSize(new PixelMetric(width), new PixelMetric(height)); aboutMeVideo = component; } } } catch (IllegalArgumentException | RemoteException e) { _logger.error("Unable to get media information for " + videoLink, e); } if (aboutMeVideo == null) { // We could check for oEmbed support in case link was to youtube, vimeo, etc - http://oembed.com/ // Since this is an example, we'll just output the link. aboutMeVideo = videoLinkComponent; } } ImageComponent picture = null; final FileEntity ProfessorProfilePicture = ProfessorProfile.getPicture(); if (ProfessorProfilePicture != null) { picture = new ImageComponent(new Image(ProfessorProfilePicture)); picture.setImageCaching(ProfessorProfilePicture.getLastModifiedTime() .before(new Date(System.currentTimeMillis() - TimeUnit.MINUTES.toMillis(60)))); } // Professional Information // We are going to output HTML received from the outside, so we need to sanitize it first for security reasons. /// Sometimes you'll do this sanitation prior to persisting the data. It depends on whether or not you need to /// keep the original unsanitized HTML around. final HTMLComponent researchSpecialty = new HTMLComponent( UIUtil.scrubHtml(ProfessorProfile.getAboutMeProse(), Event.getRequest(), Event.getResponse())); final Field rank = ProfessorProfile.getProfessorRank() != null ? new Field(ObjectUtils.toString(ProfessorProfile.getProfessorRank()), false) : null; final DateFormat parser = DateFormat.getDateTimeInstance(DateFormat.SHORT, DateFormat.SHORT); final Field dateJoined = ProfessorProfile.getDateJoined() != null ? new Field(parser.format(ProfessorProfile.getDateJoined()), false) : null; final Field onSabbatical = new Field(BooleanUtils.toStringYesNo(ProfessorProfile.isOnSabbatical()), false); // Now that we've initialized most of the content, we'll add all the components to this View /// using the standard HTML structure for a property viewer. add(of(HTMLElement.section, UIUtil.PROP + "-group " + UIUtil.NAME, new Label(TextSources.create("Name")).setHTMLElement(HTMLElement.h1), slug.setAttribute("item" + UIUtil.PROP, UIUtil.USER_ID).addClassName(UIUtil.PROP) .addClassName(UIUtil.USER_ID), namePrefix.setAttribute("item" + UIUtil.PROP, "honorificPrefix").addClassName(UIUtil.PROP) .addClassName(UIUtil.PREFIX), nameGiven.setAttribute("item" + UIUtil.PROP, "givenName").addClassName(UIUtil.PROP) .addClassName(UIUtil.FIRST_NAME), nameFamily.setAttribute("item" + UIUtil.PROP, "familyName").addClassName(UIUtil.PROP) .addClassName(UIUtil.LAST_NAME), nameSuffix.setAttribute("item" + UIUtil.PROP, "honorificSuffix").addClassName(UIUtil.PROP) .addClassName(UIUtil.SUFFIX))); // Add wrapping DIV to group address lines if necessary. Component streetAddress = (!StringFactory.isEmptyString(addressLine1.getText()) && !StringFactory.isEmptyString(addressLine2.getText()) ? of(HTMLElement.div, UIUtil.ADDRESS_LINES, addressLine1, addressLine2) : (StringFactory.isEmptyString(addressLine1.getText()) ? addressLine2 : addressLine1) .setHTMLElement(HTMLElement.div)); streetAddress.setAttribute("item" + UIUtil.PROP, "streetAddress"); boolean hasAddress = (!StringFactory.isEmptyString(addressLine1.getText()) || !StringFactory.isEmptyString(addressLine2.getText()) || !StringFactory.isEmptyString(city.getText()) || !StringFactory.isEmptyString(state.getText()) || !StringFactory.isEmptyString(postalCode.getText())); boolean hasPhone = !StringFactory.isEmptyString(phoneNumber.getText()); boolean hasEmail = !StringFactory.isEmptyString(emailAddress.getText()); // We only want to output the enclosing HTML if we have content to display. if (hasAddress || hasPhone || hasEmail) { Container contactContainer = of(HTMLElement.section, "contact", new Label(TextSources.create("Contact Information")).setHTMLElement(HTMLElement.h1)); add(contactContainer); if (hasAddress) { contactContainer.add(of(HTMLElement.div, UIUtil.PROP_GROUP + " " + UIUtil.ADDRESS, // We are using an H2 here because are immediate ancestor is a DIV. If it was a SECTION, /// then we would use an H1. See the ProfessorProfileViewer for a comparison. new Label(TextSources.create("Address")).setHTMLElement(HTMLElement.h2), streetAddress, of(HTMLElement.div, UIUtil.PLACE, city, state.setAttribute("item" + UIUtil.PROP, UIUtil.ADDRESS + "Region"), postalCode.setAttribute("item" + UIUtil.PROP, "postalCode"))) .setAttribute("item" + UIUtil.PROP, UIUtil.ADDRESS) .setAttribute("itemscope", "") .setAttribute("itemtype", "http://schema.org/PostalAddress")); } if (hasPhone) { contactContainer.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.PHONE, new Label(TextSources.create("Phone")).setHTMLElement(HTMLElement.h2), phoneNumber.setAttribute("item" + UIUtil.PROP, "telephone"))); } if (hasEmail) { contactContainer.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.EMAIL, new Label(TextSources.create("Email")).setHTMLElement(HTMLElement.h2), emailAddress.setAttribute("item" + UIUtil.PROP, UIUtil.EMAIL))); } } if (twitterLink != null || facebookLink != null || linkedInLink != null) { Container social = of(HTMLElement.section, UIUtil.SOCIAL, new Label(TextSources.create("Social Media Links")).setHTMLElement(HTMLElement.h1)); add(social); if (twitterLink != null) { twitterLink.setTarget("_blank"); twitterLink.setText(TextSources.create("Twitter Link")); social.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.TWITTER, TextSources.create("Twitter"), twitterLink)); } if (facebookLink != null) { facebookLink.setTarget("_blank"); facebookLink.setText(TextSources.create("Facebook Link")); social.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.FACEBOOK, TextSources.create("Facebook"), facebookLink)); } if (linkedInLink != null) { linkedInLink.setTarget("_blank"); linkedInLink.setText(TextSources.create("LinkedIn Link")); social.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.LINKEDIN, TextSources.create("LinkedIn"), linkedInLink)); } } final boolean hasAboutMeProse = StringFactory.isEmptyString(aboutMeProse.getText()); if (!hasAboutMeProse || aboutMeVideo != null) { Container aboutMe = of(HTMLElement.section, UIUtil.ABOUT_ME, new Label(TextSources.create("About Me")).setHTMLElement(HTMLElement.h1)); add(aboutMe); if (picture != null) { aboutMe.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.PICTURE, TextSources.create("Picture"), picture)); } if (hasAboutMeProse) { aboutMe.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.PROSE, TextSources.create("Hobbies, Interests..."), aboutMeProse)); } if (aboutMeVideo != null) { Label label = new Label(TextSources.create("Video")).setHTMLElement(HTMLElement.label); label.addClassName("vl"); aboutMe.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.VIDEO, label, aboutMeVideo)); } } final boolean hasResearchSpecialty = StringFactory.isEmptyString(researchSpecialty.getText()); if (!hasResearchSpecialty || rank != null || dateJoined != null || onSabbatical != null) { Container professionalInformation = of(HTMLElement.section, UIUtil.PROFESSIONAL_INFORMATION, new Label(TextSources.create("Professional Information")).setHTMLElement(HTMLElement.h1)); add(professionalInformation); if (rank != null) { professionalInformation.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.RANK, TextSources.create("Professor Rank"), rank)); } if (dateJoined != null) { Label label = new Label(TextSources.create("Date Joined")).setHTMLElement(HTMLElement.label); professionalInformation .add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.DATE_JOINED, label, dateJoined)); } if (onSabbatical != null) { Label label = new Label(TextSources.create("On Sabbatical")).setHTMLElement(HTMLElement.label); professionalInformation .add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.ON_SABBATICAL, label, onSabbatical)); } if (hasResearchSpecialty) { professionalInformation.add(of(HTMLElement.div, UIUtil.PROP + " " + UIUtil.PROSE, TextSources.create("Research Specialty"), aboutMeProse)); } } }
From source file:org.bdval.BDVModel.java
/** * Loads a BDVal model from disk. BDVal models are generated with the * {@link org.bdval.DiscoverAndValidate} tools (BDVal). * * @param options specific options to use when loading the model * @throws IOException if there is a problem accessing the model * @throws ClassNotFoundException if the type of the model is not recognized */// w ww . j a v a 2 s . c o m public void load(final DAVOptions options) throws IOException, ClassNotFoundException { final boolean zipExists = new File(zipFilename).exists(); if (LOG.isDebugEnabled()) { LOG.debug("model zip file exists: " + BooleanUtils.toStringYesNo(zipExists)); } properties.clear(); properties.setDelimiterParsingDisabled(true); // check to see if a zip file exists - if it doesn't we assume it's an old binary format if (zipModel && zipExists) { LOG.info("Reading model from filename: " + zipFilename); final ZipFile zipFile = new ZipFile(zipFilename); try { final ZipEntry propertyEntry = zipFile.getEntry(FilenameUtils.getName(modelPropertiesFilename)); // load properties properties.clear(); properties.addAll(loadProperties(zipFile.getInputStream(propertyEntry), options)); // the platform is more than one entry in the zip, so here we pass the whole zip trainingPlatform = options.trainingPlatform = loadPlatform(zipFile); if (isConsensusModel()) { int index = 0; final ObjectList<String> modelJurorFilePrefixes = new ObjectArrayList<String>(); String nextFilename; while ((nextFilename = (String) properties .getProperty("bdval.consensus.model." + Integer.toString(index))) != null) { modelJurorFilePrefixes.add(nextFilename); index++; } delegate = new ConsensusBDVModel(modelFilenamePrefix, modelJurorFilePrefixes.toArray(new String[modelJurorFilePrefixes.size()])); delegate.load(options); setGeneList(convertTrainingPlatformToGeneList(options)); return; } else { probesetScaleMeanMap = options.probesetScaleMeanMap = loadMeansMap( zipFile.getInputStream(zipFile.getEntry(FilenameUtils.getName(meansMapFilename)))); probesetScaleRangeMap = options.probesetScaleRangeMap = loadRangeMap( zipFile.getInputStream(zipFile.getEntry(FilenameUtils.getName(rangeMapFilename)))); setGeneList(convertTrainingPlatformToGeneList(options)); } final String modelParameters = properties.getString("training.classifier.parameters"); LOG.info("Loading model " + modelFilename); final InputStream modelStream = zipFile .getInputStream(zipFile.getEntry(FilenameUtils.getName(modelFilename))); helper = ClassificationModel.load(modelStream, modelParameters); LOG.info("Model loaded."); options.classiferClass = helper.classifier.getClass(); // we don't have a way to inspect the saved model for parameters used during training: options.classifierParameters = ClassificationModel.splitModelParameters(modelParameters); } finally { try { zipFile.close(); } catch (IOException e) { // NOPMD // ignore since there is not much we can do anyway } } } else { final File propertyFile = new File(modelFilenamePrefix + "." + ModelFileExtension.props.toString()); LOG.debug("Loading properties from " + propertyFile.getAbsolutePath()); final Properties properties = loadProperties(FileUtils.openInputStream(propertyFile), options); trainingPlatform = options.trainingPlatform = (GEOPlatformIndexed) BinIO.loadObject(platformFilename); if (isConsensusModel()) { int index = 0; final ObjectList<String> modelJurorFilePrefixes = new ObjectArrayList<String>(); String nextFilename = null; while ((nextFilename = (String) properties .getProperty("bdval.consensus.model." + Integer.toString(index))) != null) { modelJurorFilePrefixes.add(nextFilename); index++; } delegate = new ConsensusBDVModel(modelFilenamePrefix, modelJurorFilePrefixes.toArray(new String[modelJurorFilePrefixes.size()])); delegate.load(options); setGeneList(convertTrainingPlatformToGeneList(options)); return; } else { probesetScaleMeanMap = options.probesetScaleMeanMap = (Object2DoubleMap<MutableString>) BinIO .loadObject(modelFilenamePrefix + ".means"); if (LOG.isDebugEnabled()) { LOG.debug("Number of entries in means map = " + probesetScaleMeanMap.size()); } probesetScaleRangeMap = options.probesetScaleRangeMap = (Object2DoubleMap<MutableString>) BinIO .loadObject(modelFilenamePrefix + ".ranges"); if (LOG.isDebugEnabled()) { LOG.debug("Number of entries in range map = " + probesetScaleRangeMap.size()); } setGeneList(convertTrainingPlatformToGeneList(options)); } final String modelParameters = properties.getString("training.classifier.parameters"); LOG.info("Loading model " + modelFilename); helper = ClassificationModel.load(modelFilename, modelParameters); LOG.info("Model loaded."); options.classiferClass = helper.classifier.getClass(); // we don't have a way to inspect the saved model for parameters used during training: options.classifierParameters = ClassificationModel.splitModelParameters(modelParameters); } }
From source file:org.bdval.BDVModel.java
private GEOPlatformIndexed loadPlatform() throws ClassNotFoundException, IOException { final GEOPlatformIndexed platform; final boolean zipExists = new File(zipFilename).exists(); if (LOG.isDebugEnabled()) { LOG.debug("model zip file exists: " + BooleanUtils.toStringYesNo(zipExists)); }/*ww w .j ava 2s . com*/ if (zipModel && zipExists) { platform = loadPlatform(new ZipFile(zipFilename)); } else { platform = (GEOPlatformIndexed) BinIO.loadObject(platformFilename); } return platform; }
From source file:org.bdval.ConsensusBDVModel.java
/** * @param options specific options to use when loading the properties * @throws IOException if there is a problem accessing the properties *///from www . j ava 2 s. c o m private void loadProperties(final DAVOptions options) throws IOException { final boolean zipExists = new File(zipFilename).exists(); if (LOG.isDebugEnabled()) { LOG.debug("model zip file exists: " + BooleanUtils.toStringYesNo(zipExists)); } properties.clear(); // check to see if a zip file exists - if it doesn't we assume it's an old binary format if (zipModel && zipExists) { LOG.info("Reading model from filename: " + zipFilename); final ZipFile zipFile = new ZipFile(zipFilename); try { final ZipEntry propertyEntry = zipFile.getEntry(FilenameUtils.getName(modelPropertiesFilename)); // load properties properties.clear(); properties.addAll(loadProperties(zipFile.getInputStream(propertyEntry), options)); } finally { try { zipFile.close(); } catch (IOException e) { // NOPMD // ignore since there is not much we can do anyway } } } else { final File propertyFile = new File(modelFilenamePrefix + "." + ModelFileExtension.props.toString()); if (propertyFile.exists() && propertyFile.canRead()) { LOG.debug("Loading properties from " + propertyFile.getAbsolutePath()); properties.addAll(loadProperties(FileUtils.openInputStream(propertyFile), options)); } } }
From source file:org.kuali.student.cm.course.service.impl.CourseMaintainableImpl.java
/** * Updates the ReviewProposalDisplay object for the Course Proposal and refreshes remote data elements based on passed in @shouldRepopulateRemoteData param * * @param shouldRepopulateRemoteData identifies whether remote data elements like Collaborators should be refreshed *//*from w w w . j av a 2 s.c o m*/ @Override protected void updateReview(ProposalElementsWrapper proposalElementsWrapper, boolean shouldRepopulateRemoteData) { CourseInfoWrapper courseInfoWrapper = (CourseInfoWrapper) proposalElementsWrapper; CourseInfo savedCourseInfo = courseInfoWrapper.getCourseInfo(); // Update course section ReviewProposalDisplay reviewData = courseInfoWrapper.getReviewProposalDisplay(); if (reviewData == null) { reviewData = new ReviewProposalDisplay(); courseInfoWrapper.setReviewProposalDisplay(reviewData); } if (StringUtils.isBlank(courseInfoWrapper.getPreviousSubjectCode()) && StringUtils.isNotBlank(savedCourseInfo.getSubjectArea())) { courseInfoWrapper.setPreviousSubjectCode(savedCourseInfo.getSubjectArea()); } reviewData.getCourseSection().setCourseTitle(savedCourseInfo.getCourseTitle()); reviewData.getCourseSection().setTranscriptTitle(savedCourseInfo.getTranscriptTitle()); reviewData.getCourseSection().setSubjectArea(savedCourseInfo.getSubjectArea()); reviewData.getCourseSection().setCourseNumberSuffix(savedCourseInfo.getCourseNumberSuffix()); if (StringUtils.isNotBlank(courseInfoWrapper.getProposalInfo().getId())) { Date updateTime = courseInfoWrapper.getProposalInfo().getMeta().getUpdateTime(); if (updateTime != null) { courseInfoWrapper .setLastUpdated(CurriculumManagementConstants.CM_DATE_FORMATTER.format(updateTime)); } } if (savedCourseInfo.getDescr() != null) { reviewData.getCourseSection().setDescription(savedCourseInfo.getDescr().getPlain()); } reviewData.getCourseSection().getInstructors().clear(); for (CluInstructorInfoWrapper insturctorWrappers : courseInfoWrapper.getInstructorWrappers()) { reviewData.getCourseSection().getInstructors().add(insturctorWrappers.getDisplayName()); } reviewData.getCourseSection().getCrossListings().clear(); if (!savedCourseInfo.getCrossListings().isEmpty()) { for (CourseCrossListingInfo crossListingInfo : savedCourseInfo.getCrossListings()) { reviewData.getCourseSection().getCrossListings().add(crossListingInfo.getCode()); } } reviewData.getCourseSection().getJointlyOfferedCourses().clear(); if (!savedCourseInfo.getJoints().isEmpty()) { for (CourseJointInfo jointInfo : savedCourseInfo.getJoints()) { reviewData.getCourseSection().getJointlyOfferedCourses() .add(jointInfo.getSubjectArea() + jointInfo.getCourseNumberSuffix()); } } reviewData.getCourseSection().getVariations().clear(); if (!savedCourseInfo.getVariations().isEmpty()) { for (CourseVariationInfo variationInfo : savedCourseInfo.getVariations()) { if (variationInfo.getVariationCode() == null && variationInfo.getVariationTitle() == null) { reviewData.getCourseSection().getVariations().add(""); } else if (variationInfo.getVariationCode() == null) { reviewData.getCourseSection().getVariations() .add("" + ": " + variationInfo.getVariationTitle()); } else { reviewData.getCourseSection().getVariations() .add(variationInfo.getVariationCode() + ": " + variationInfo.getVariationTitle()); } } } // Update governance section reviewData.getGovernanceSection().getCampusLocations().clear(); reviewData.getGovernanceSection().getCampusLocations() .addAll(updateCampusLocations(savedCourseInfo.getCampusLocations())); reviewData.getGovernanceSection().setCurriculumOversight(buildCurriculumOversightList( savedCourseInfo.getSubjectArea(), savedCourseInfo.getUnitsContentOwner())); reviewData.getGovernanceSection().getAdministeringOrganization().clear(); for (OrganizationInfoWrapper organizationInfoWrapper : courseInfoWrapper.getAdministeringOrganizations()) { if (organizationInfoWrapper.isUserEntered()) { reviewData.getGovernanceSection().getAdministeringOrganization() .add(organizationInfoWrapper.getOrganizationName()); } } // update course logistics section reviewData.getCourseLogisticsSection().getTerms().clear(); try { for (String termType : savedCourseInfo.getTermsOffered()) { TypeInfo term = getTypeService().getType(termType, ContextUtils.createDefaultContextInfo()); reviewData.getCourseLogisticsSection().getTerms().add(term.getName()); } } catch (Exception e) { throw new RiceIllegalStateException(e); } if (savedCourseInfo.getDuration() != null && StringUtils.isNotBlank(savedCourseInfo.getDuration().getAtpDurationTypeKey())) { try { TypeInfo type = getTypeService().getType(savedCourseInfo.getDuration().getAtpDurationTypeKey(), ContextUtils.createDefaultContextInfo()); reviewData.getCourseLogisticsSection().setAtpDurationType(type.getName()); } catch (Exception e) { throw new RiceIllegalStateException(e); } } if (savedCourseInfo.getDuration() != null) { reviewData.getCourseLogisticsSection().setTimeQuantity(savedCourseInfo.getDuration().getTimeQuantity()); } reviewData.getCourseLogisticsSection().setAudit(BooleanUtils.toStringYesNo(courseInfoWrapper.isAudit())); reviewData.getCourseLogisticsSection() .setPassFail(BooleanUtils.toStringYesNo(courseInfoWrapper.isPassFail())); reviewData.getCourseLogisticsSection().setGradingOptions(buildGradingOptionsList()); reviewData.getCourseLogisticsSection().setFinalExamStatus(getFinalExamString()); reviewData.getCourseLogisticsSection() .setFinalExamStatusRationale(courseInfoWrapper.getFinalExamRationale()); reviewData.getCourseLogisticsSection().getOutcomes().clear(); for (ResultValuesGroupInfoWrapper rvg : courseInfoWrapper.getCreditOptionWrappers()) { if (StringUtils.isNotBlank(rvg.getTypeKey())) { String creditOptionType = ""; String creditOptionValue = rvg.getUiHelper().getResultValue(); if (StringUtils.equals(rvg.getTypeKey(), LrcServiceConstants.RESULT_VALUES_GROUP_TYPE_KEY_FIXED)) { creditOptionType = "Fixed"; if (StringUtils.contains(rvg.getResultValueRange().getMinValue(), "degree.")) { creditOptionValue = StringUtils.substringAfterLast(rvg.getUiHelper().getResultValue(), "degree."); } else { creditOptionValue = rvg.getUiHelper().getResultValue(); } } else if (StringUtils.equals(rvg.getTypeKey(), LrcServiceConstants.RESULT_VALUES_GROUP_TYPE_KEY_MULTIPLE)) { creditOptionType = "Multiple"; } else if (StringUtils.equals(rvg.getTypeKey(), LrcServiceConstants.RESULT_VALUES_GROUP_TYPE_KEY_RANGE)) { creditOptionType = "Range"; } reviewData.getCourseLogisticsSection().getOutcomes() .add(new OutcomeReviewSection(creditOptionType, creditOptionValue)); } } List<FormatInfoWrapper> formatInfoWrappers = new ArrayList<FormatInfoWrapper>(); for (FormatInfo formatInfo : savedCourseInfo.getFormats()) { List<ActivityInfoWrapper> activityInfoWrapperList = new ArrayList<ActivityInfoWrapper>(); for (ActivityInfo activityInfo : formatInfo.getActivities()) { Integer anticipatedClassSize = activityInfo.getDefaultEnrollmentEstimate(); String activityType = activityInfo.getTypeKey(); String contactHours = ""; String durationCount = ""; if (activityInfo.getDuration() != null) { String durationType = null; if (StringUtils.isNotBlank(activityInfo.getDuration().getAtpDurationTypeKey())) { try { TypeInfo duration = getTypeService().getType( activityInfo.getDuration().getAtpDurationTypeKey(), createContextInfo()); durationType = duration.getName(); } catch (Exception e) { throw new RuntimeException(e); } } if (activityInfo.getDuration().getTimeQuantity() != null) { durationCount = activityInfo.getDuration().getTimeQuantity().toString(); } if (StringUtils.isNotBlank(durationType)) { durationCount = durationCount + " " + durationType + CurriculumManagementConstants.COLLECTION_ITEM_PLURAL_END; } } if (activityInfo.getContactHours() != null) { String contactType = activityInfo.getContactHours().getUnitTypeKey(); contactType = StringUtils.substringAfterLast(contactType, "."); if (activityInfo.getContactHours().getUnitQuantity() != null) { contactHours = activityInfo.getContactHours().getUnitQuantity(); } if (StringUtils.isNotBlank(contactType)) { contactHours = contactHours + " per " + StringUtils.lowerCase(contactType); } } ActivityInfoWrapper activityInfoWrapper = new ActivityInfoWrapper(anticipatedClassSize, activityType, durationCount, contactHours); activityInfoWrapperList.add(activityInfoWrapper); } FormatInfoWrapper formatInfoWrapper = new FormatInfoWrapper(activityInfoWrapperList); formatInfoWrappers.add(formatInfoWrapper); } if (!formatInfoWrappers.isEmpty()) { reviewData.getCourseLogisticsSection().setFormatInfoWrappers(formatInfoWrappers); } /** * Active Dates section */ reviewData.getActiveDatesSection() .setStartTerm(getTermDesc(courseInfoWrapper.getCourseInfo().getStartTerm())); reviewData.getActiveDatesSection().setEndTerm(getTermDesc(courseInfoWrapper.getCourseInfo().getEndTerm())); reviewData.getActiveDatesSection() .setPilotCourse(BooleanUtils.toStringYesNo(courseInfoWrapper.getCourseInfo().isPilotCourse())); /** * Financials section */ // reviewData.getFinancialsSection().setFee(); // reviewData.getFinancialsSection().setExpendingOrganization(); // reviewData.getFinancialsSection().setRevenueSource(); if (savedCourseInfo.getFeeJustification() != null) { reviewData.getFinancialsSection() .setJustificationOfFees(savedCourseInfo.getFeeJustification().getPlain()); } /** * Populate 'Proposal' specific model */ if (courseInfoWrapper.isProposalDataUsed()) { updateSupportingDocumentsForReviewPages(courseInfoWrapper); updateProposalDataForReviewPages(reviewData, shouldRepopulateRemoteData); } }
From source file:org.kuali.student.enrollment.class2.acal.dto.HolidayWrapper.java
public String getIsNonInstructional() { if (holidayInfo != null) { return StringUtils.capitalize(BooleanUtils.toStringYesNo(!holidayInfo.getIsInstructionalDay())); }//w w w . j a v a 2s . com return StringUtils.capitalize(BooleanUtils.toStringYesNo(true)); }