Example usage for org.apache.commons.lang SerializationUtils deserialize

Introduction

In this page you can find the example usage for org.apache.commons.lang SerializationUtils deserialize.

Prototype

public static Object deserialize(byte[] objectData) 

Source Link

Document

Deserializes a single Object from an array of bytes.

Usage

From source file:com.github.seqware.queryengine.plugins.runners.hbasemr.MRHBasePluginRunner.java

public static Class transferConfiguration(JobContext context, JobRunParameterInterface inter) {
    Configuration conf = context.getConfiguration();
    String[] strings = conf.getStrings(MRHBasePluginRunner.EXT_PARAMETERS);
    Logger.getLogger(PluginRunnerMapper.class.getName())
            .info("QEMapper configured with: host: "
                    + Constants.Term.HBASE_PROPERTIES.getTermValue(Map.class).toString() + " namespace: "
                    + Constants.Term.NAMESPACE.getTermValue(String.class));
    final String mapParameter = strings[SETTINGS_MAP];
    if (mapParameter != null && !mapParameter.isEmpty()) {
        Map<String, String> settingsMap = (Map<String, String>) ((Object[]) SerializationUtils
                .deserialize(Base64.decodeBase64(mapParameter)))[EXTERNAL_PARAMETERS];
        if (settingsMap != null) {
            Logger.getLogger(FeatureSetCountPlugin.class.getName())
                    .info("Settings map retrieved with " + settingsMap.size() + " entries");
            Constants.setSETTINGS_MAP(settingsMap);
        }/*from   w w  w. j  a  v  a2s .co  m*/
    }

    Logger.getLogger(PluginRunnerMapper.class.getName())
            .info("QEMapper configured with: host: "
                    + Constants.Term.HBASE_PROPERTIES.getTermValue(Map.class).toString() + " namespace: "
                    + Constants.Term.NAMESPACE.getTermValue(String.class));
    final String externalParameters = strings[EXTERNAL_PARAMETERS];
    if (externalParameters != null && !externalParameters.isEmpty()) {
        inter.setExt_parameters(
                (Object[]) SerializationUtils.deserialize(Base64.decodeBase64(externalParameters)));
    }
    final String internalParameters = strings[INTERNAL_PARAMETERS];
    if (internalParameters != null && !internalParameters.isEmpty()) {
        inter.setInt_parameters(
                (Object[]) SerializationUtils.deserialize(Base64.decodeBase64(internalParameters)));
    }
    final String sourceSets = strings[NUM_AND_SOURCE_FEATURE_SETS];
    if (sourceSets != null && !sourceSets.isEmpty()) {
        List<FeatureSet> sSets = convertBase64StrToFeatureSets(sourceSets);
        inter.setSourceSets(sSets);
    }
    final String destSetParameter = strings[DESTINATION_FEATURE_SET];
    if (destSetParameter != null && !destSetParameter.isEmpty()) {
        inter.setDestSet(SWQEFactory.getSerialization().deserialize(Base64.decodeBase64(destSetParameter),
                FeatureSet.class));
    }
    final String pluginParameter = strings[PLUGIN_CLASS];
    if (pluginParameter != null && !pluginParameter.isEmpty()) {
        Object deserialize = SerializationUtils.deserialize(Base64.decodeBase64(pluginParameter));
        Class plugin = (Class) deserialize;
        return plugin;
    }
    throw new RuntimeException("Could not determine plugin to run");
}

---

From source file:com.ephesoft.dcma.da.common.ExecuteUpdatePatch.java

private Map<String, BatchClass> readBatchClassSerializeFile() {
    FileInputStream fileInputStream = null;
    Map<String, BatchClass> newBatchClassMap = null;
    File serializedFile = null;//from  ww w . ja v a2 s. c  o  m
    try {
        String batchClassFilePath = dbPatchFolderLocation + File.separator
                + DataAccessConstant.BATCH_CLASS_UPDATE + SERIALIZATION_EXT;
        serializedFile = new File(batchClassFilePath);
        fileInputStream = new FileInputStream(serializedFile);
        newBatchClassMap = (Map<String, BatchClass>) SerializationUtils.deserialize(fileInputStream);
        updateFile(serializedFile, batchClassFilePath);
    } catch (IOException e) {
        LOG.info(DataAccessConstant.ERROR_DURING_READING_THE_SERIALIZED_FILE);
    } catch (Exception e) {
        LOG.error(DataAccessConstant.ERROR_DURING_DE_SERIALIZING_THE_PROPERTIES_FOR_DATABASE_UPGRADE, e);
    } finally {
        try {
            if (fileInputStream != null) {
                fileInputStream.close();
            }
        } catch (Exception e) {
            if (serializedFile != null) {
                LOG.error(DataAccessConstant.PROBLEM_CLOSING_STREAM_FOR_FILE + serializedFile.getName());
            }
        }
    }

    return newBatchClassMap;
}

---

From source file:info.raack.appliancelabeler.data.JDBCDatabase.java

public Map<String, Map<String, OAuthConsumerToken>> getOAuthTokensForAllUsers() {
    try {//w  w  w .  j a  v a 2s . c  o  m
        List<UserOAuthTokenCarrier> carriers = jdbcTemplate.query(queryForAllUserOAuthTokens,
                new RowMapper<UserOAuthTokenCarrier>() {

                    public UserOAuthTokenCarrier mapRow(ResultSet rs, int arg1) throws SQLException {
                        UserOAuthTokenCarrier token = new UserOAuthTokenCarrier();
                        token.userId = rs.getString("user_id");
                        Blob blob = rs.getBlob("spring_oauth_serialized_token_map");
                        Object tokenObject = SerializationUtils.deserialize(blob.getBinaryStream());
                        Map<String, OAuthConsumerToken> tokens = (Map<String, OAuthConsumerToken>) tokenObject;
                        token.tokens = tokens;

                        return token;
                    }
                });

        Map<String, Map<String, OAuthConsumerToken>> tokens = new HashMap<String, Map<String, OAuthConsumerToken>>();
        for (UserOAuthTokenCarrier carrier : carriers) {
            tokens.put(carrier.userId, carrier.tokens);
        }

        return tokens;
    } catch (Exception e) {
        throw new RuntimeException("Error while getting user tokens", e);
    }
}

---

From source file:com.ephesoft.dcma.da.common.ExecuteUpdatePatch.java

private void readPluginSerializeFile() {
    FileInputStream fileInputStream = null;
    File serializedFile = null;//from w  ww  .j ava2 s.  c o  m
    try {
        String pluginFilePath = dbPatchFolderLocation + File.separator + DataAccessConstant.PLUGIN_UPDATE
                + SERIALIZATION_EXT;
        serializedFile = new File(pluginFilePath);
        fileInputStream = new FileInputStream(serializedFile);
        batchClassNameVsBatchClassPluginMap = (Map<String, List<BatchClassPlugin>>) SerializationUtils
                .deserialize(fileInputStream);
        updateFile(serializedFile, pluginFilePath);
    } catch (IOException e) {
        LOG.info(DataAccessConstant.ERROR_DURING_READING_THE_SERIALIZED_FILE);
    } catch (Exception e) {
        LOG.error(DataAccessConstant.ERROR_DURING_DE_SERIALIZING_THE_PROPERTIES_FOR_DATABASE_UPGRADE, e);
    } finally {
        try {
            if (fileInputStream != null) {
                fileInputStream.close();
            }
        } catch (Exception e) {
            if (serializedFile != null) {
                LOG.error(DataAccessConstant.PROBLEM_CLOSING_STREAM_FOR_FILE + serializedFile.getName());
            }
        }
    }
}

---

From source file:com.ephesoft.dcma.da.common.ExecuteUpdatePatch.java

private List<BatchClassScannerConfiguration> readScannerConfigSerializeFile() {
    FileInputStream fileInputStream = null;
    List<BatchClassScannerConfiguration> newScannerConfigsList = null;
    File serializedFile = null;/*ww w .j a va 2s.  co m*/
    try {
        String scannerConfigFilePath = dbPatchFolderLocation + File.separator
                + DataAccessConstant.SCANNER_CONFIG_UPDATE + SERIALIZATION_EXT;
        serializedFile = new File(scannerConfigFilePath);
        fileInputStream = new FileInputStream(serializedFile);
        newScannerConfigsList = (List<BatchClassScannerConfiguration>) SerializationUtils
                .deserialize(fileInputStream);
        updateFile(serializedFile, scannerConfigFilePath);
    } catch (IOException e) {
        LOG.info(DataAccessConstant.ERROR_DURING_READING_THE_SERIALIZED_FILE);
    } catch (Exception e) {
        LOG.error(DataAccessConstant.ERROR_DURING_DE_SERIALIZING_THE_PROPERTIES_FOR_DATABASE_UPGRADE, e);
    } finally {
        try {
            if (fileInputStream != null) {
                fileInputStream.close();
            }
        } catch (Exception e) {
            if (serializedFile != null) {
                LOG.error(DataAccessConstant.PROBLEM_CLOSING_STREAM_FOR_FILE + serializedFile.getName());
            }
        }
    }
    return newScannerConfigsList;

}

---

From source file:com.ephesoft.dcma.da.common.ExecuteUpdatePatch.java

private Map<String, List<BatchClassPluginConfig>> readPluginConfigSerializeFile() {
    FileInputStream fileInputStream = null;
    Map<String, List<BatchClassPluginConfig>> newPluginConfigsMap = null;
    File serializedFile = null;/*from  ww  w  . j av a  2s.  co  m*/
    try {
        String pluginConfigFilePath = dbPatchFolderLocation + File.separator
                + DataAccessConstant.PLUGIN_CONFIG_UPDATE + SERIALIZATION_EXT;
        serializedFile = new File(pluginConfigFilePath);
        fileInputStream = new FileInputStream(serializedFile);
        newPluginConfigsMap = (Map<String, List<BatchClassPluginConfig>>) SerializationUtils
                .deserialize(fileInputStream);
        updateFile(serializedFile, pluginConfigFilePath);
    } catch (IOException e) {
        LOG.info(DataAccessConstant.ERROR_DURING_READING_THE_SERIALIZED_FILE);
    } catch (Exception e) {
        LOG.error(DataAccessConstant.ERROR_DURING_DE_SERIALIZING_THE_PROPERTIES_FOR_DATABASE_UPGRADE, e);
    } finally {
        try {
            if (fileInputStream != null) {
                fileInputStream.close();
            }
        } catch (Exception e) {
            if (serializedFile != null) {
                LOG.error(DataAccessConstant.PROBLEM_CLOSING_STREAM_FOR_FILE + serializedFile.getName());
            }
        }
    }
    return newPluginConfigsMap;
}

---

From source file:com.ephesoft.dcma.imp.FolderImporter.java

private List<BatchClassField> readBatchClassFieldSerializeFile(final String sFinalFolder) {
    FileInputStream fileInputStream = null;
    List<BatchClassField> batchClassFieldList = null;
    File serializedFile = null;//from ww  w  . ja v a 2 s  . c  o  m
    try {
        final String serializedFilePath = sFinalFolder + File.separator
                + IFolderImporterConstants.BCF_SER_FILE_NAME + IFolderImporterConstants.SERIALIZATION_EXT;
        serializedFile = new File(serializedFilePath);
        fileInputStream = new FileInputStream(serializedFile);
        batchClassFieldList = (List<BatchClassField>) SerializationUtils.deserialize(fileInputStream);
        // updateFile(serializedFile, serializedFilePath);
    } catch (final IOException e) {
        LOGGER.info("Error during reading the serialized file. ");
    } catch (final Exception e) {
        LOGGER.error("Error during de-serializing the properties for Database Upgrade: ", e);
    } finally {
        try {
            if (fileInputStream != null) {
                fileInputStream.close();
            }
        } catch (final Exception e) {
            if (serializedFile != null) {
                LOGGER.error("Problem closing stream for file :" + serializedFile.getName());
            }
        }
    }

    return batchClassFieldList;
}

---

From source file:com.ephesoft.dcma.da.common.ExecuteUpdatePatch.java

private Map<String, List<BatchClassModuleConfig>> readModuleConfigSerializeFile() {
    FileInputStream fileInputStream = null;
    Map<String, List<BatchClassModuleConfig>> newModuleConfigsMap = null;
    File serializedFile = null;//from  w  w w  . j  av a 2 s .  c o m
    try {
        String moduleConfigFilePath = dbPatchFolderLocation + File.separator
                + DataAccessConstant.MODULE_CONFIG_UPDATE + SERIALIZATION_EXT;
        serializedFile = new File(moduleConfigFilePath);
        fileInputStream = new FileInputStream(serializedFile);
        newModuleConfigsMap = (Map<String, List<BatchClassModuleConfig>>) SerializationUtils
                .deserialize(fileInputStream);
        updateFile(serializedFile, moduleConfigFilePath);
    } catch (IOException e) {
        LOG.info(DataAccessConstant.ERROR_DURING_READING_THE_SERIALIZED_FILE);
    } catch (Exception e) {
        LOG.error(DataAccessConstant.ERROR_DURING_DE_SERIALIZING_THE_PROPERTIES_FOR_DATABASE_UPGRADE, e);
    } finally {
        try {
            if (fileInputStream != null) {
                fileInputStream.close();
            }
        } catch (Exception e) {
            if (serializedFile != null) {
                LOG.error(DataAccessConstant.PROBLEM_CLOSING_STREAM_FOR_FILE + serializedFile.getName());
            }
        }
    }
    return newModuleConfigsMap;
}

---

From source file:at.gv.egovernment.moa.id.storage.AuthenticationSessionStoreage.java

private static AuthenticationSession decryptSession(AuthenticatedSessionStore dbsession) throws BuildException {
    EncryptedData encdata = new EncryptedData(dbsession.getSession(), dbsession.getIv());
    byte[] decrypted = SessionEncrytionUtil.getInstance().decrypt(encdata);

    return (AuthenticationSession) SerializationUtils.deserialize(decrypted);

}

---

From source file:ch.zhaw.ficore.p2abc.services.user.UserServiceGUI.java

/**
 * This is the entry point for the User to obtain a credential from an
 * issuer. This method will display a webpage asking for the required data
 * and will direct the User to obtainCredential2
 * /*from   w  w  w .j  a v a 2  s. c o  m*/
 * @return Response
 */
@GET
@Path("/obtainCredential/")
public Response obtainCredential() {
    try {
        Html html = UserGUI.getHtmlPramble("Obtain Credential [1]", request);
        Div mainDiv = new Div().setCSSClass("mainDiv");
        html.appendChild(UserGUI.getBody(mainDiv));
        mainDiv.appendChild(new H2().appendChild(new Text("Obtain Credential")));
        mainDiv.appendChild(new P().setCSSClass("info")
                .appendChild(new Text("Please enter the information required to obtain the credential. "
                        + "If the the Issuer field is blank please add an alias for an URL first via the Profile page.")));
        Form f = new Form("./obtainCredential2");
        f.setMethod("post");

        Table tbl = new Table();
        Tr row = null;
        f.appendChild(tbl);

        row = new Tr();
        row.appendChild(new Td().appendChild(new Label().appendChild(new Text("Username:"))));
        row.appendChild(new Td().appendChild(new Input().setType("text").setName("un")));
        tbl.appendChild(row);

        row = new Tr();
        row.appendChild(new Td().appendChild(new Label().appendChild(new Text("Password:"))));
        row.appendChild(new Td().appendChild(new Input().setType("password").setName("pw")));
        tbl.appendChild(row);

        row = new Tr();
        row.appendChild(new Td().appendChild(new Label().appendChild(new Text("Issuer:"))));
        // row.appendChild(new Td().appendChild(new Input().setType("text")
        // .setName("is")));
        Select s = new Select().setName("is");

        row.appendChild(new Td().appendChild(s));
        // .setName("is")));

        List<String> keys = urlStorage.keysAsStrings();
        List<byte[]> values = urlStorage.values();
        List<String> urls = new ArrayList<String>();

        for (byte[] b : values) {
            urls.add((String) SerializationUtils.deserialize(b));
        }

        for (int i = 0; i < keys.size(); i++) {
            Option o = new Option().appendChild(new Text(keys.get(i))).setValue(urls.get(i));
            s.appendChild(o);
        }

        tbl.appendChild(row);

        row = new Tr();
        row.appendChild(new Td().appendChild(new Label().appendChild(new Text("Credential specification:"))));
        Select sel = new Select().setName("cs");
        row.appendChild(new Td().appendChild(sel));
        tbl.appendChild(row);

        Context initCtx = new InitialContext();
        Context envCtx = (Context) initCtx.lookup("java:/comp/env");

        boolean enabled = (Boolean) envCtx.lookup("cfg/userGui/keyrockEnabled");

        String enableString = enabled ? "yes" : "no";
        f.appendChild(new Input().setType("hidden").setName("oauth").setValue(enableString));

        f.appendChild(new Input().setType("submit").setValue("Obtain"));

        mainDiv.appendChild(f);

        Settings settings = (Settings) RESTHelper
                .getRequest(ServicesConfiguration.getUserServiceURL() + "getSettings/", Settings.class);

        List<CredentialSpecification> credSpecs = settings.credentialSpecifications;

        for (CredentialSpecification credSpec : credSpecs) {
            URI uri = credSpec.getSpecificationUID();
            sel.appendChild(new Option().appendChild(new Text(uri.toString())));
        }

        return Response.ok(html.write()).build();
    } catch (Exception e) {
        log.catching(e);
        return log.exit(Response.status(Response.Status.BAD_REQUEST)
                .entity(UserGUI.errorPage(ExceptionDumper.dumpExceptionStr(e, log), request).write()).build());
    }
}

---

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