Example usage for org.apache.commons.lang StringUtils indexOfAny

Introduction

In this page you can find the example usage for org.apache.commons.lang StringUtils indexOfAny.

Prototype

public static int indexOfAny(String str, String[] searchStrs)

Source Link

Document

Find the first index of any of a set of potential substrings.

Usage

From source file:uk.ac.ebi.embl.api.validation.check.genomeassembly.UnlocalisedFieldandValueCheck.java

public ValidationResult check(GenomeAssemblyRecord unLocalisedRecord) {
    result = new ValidationResult();

    if (unLocalisedRecord == null) {
        return result;
    }//from w w w.  ja  v  a2 s  .c  o  m
    @SuppressWarnings("unchecked")
    ArrayList<UnlocalisedDataRow> rows = (ArrayList<UnlocalisedDataRow>) unLocalisedRecord.getFields();

    for (UnlocalisedDataRow row : rows) {

        object_name = row.get_object_name();
        chromosome_name = row.get_chromosome_name();
        if (object_name == null) {
            reportError(row.getOrigin(), MISSING_MANDATORY_ID, UnlocalisedRecord.OBJECT_NAME_KEYWORD);
        } else if (object_name.split(" ").length > 1) {
            reportError(row.getOrigin(), INVALID_VALUE_ID, UnlocalisedRecord.OBJECT_NAME_KEYWORD, object_name);
        }
        if (chromosome_name == null) {
            reportError(row.getOrigin(), MISSING_MANDATORY_ID, UnlocalisedRecord.CHROMOSOME_NAME_KEYWORD);
        } else if (StringUtils.indexOfAny(chromosome_name, UnlocalisedRecord.INVALID_CHNAME_VALUES) != -1) {
            reportError(row.getOrigin(), INVALID_VALUE_ID, UnlocalisedRecord.CHROMOSOME_NAME_KEYWORD,
                    chromosome_name);
        }

    }
    return result;
}

From source file:uk.ac.ebi.embl.api.validation.helper.FileUtils.java

public static FileType getFileType(File formatFile) throws IOException {
    BufferedReader fileFormatReader = new BufferedReader(new FileReader(formatFile));
    // FINDING THE TYPE OF FILE BY READING THE FIRST LINE OF THE FILE
    String firstLineofFile = fileFormatReader.readLine();
    fileFormatReader.close();/*from w ww. ja va 2  s . c  o m*/
    if (firstLineofFile.startsWith(embl_filetoken)) {
        return FileType.EMBL;
    } else if (firstLineofFile.startsWith(genbank_filetoken)) {
        return FileType.GENBANK;
    } else if (firstLineofFile.startsWith(gff_filetoken)) {
        return FileType.GFF3;
    } else if (StringUtils.indexOfAny(formatFile.getName(), AssemblyFileToken) != -1) {
        return FileType.GENOMEASSEMBLY;
    } else if (firstLineofFile.startsWith(fasta_filetoken)) {
        return FileType.FASTA;
    }
    return null;
}