List of usage examples for org.apache.commons.lang StringUtils trim
public static String trim(String str)
Removes control characters (char <= 32) from both ends of this String, handling null by returning null.
From source file:edu.monash.merc.system.parser.GPMDbParser.java
public GPMDbBean parse(InputStream ins, String encoding, GPMDbType gpmDbType) { try {/*from w ww . j a v a 2 s .c o m*/ String defaultEncoding = "UTF-8"; if (StringUtils.isNotBlank(encoding)) { defaultEncoding = encoding; } InputStreamReader insReader = new InputStreamReader(ins, Charset.forName(defaultEncoding)); BufferedReader reader = new BufferedReader(insReader); //create a GPMDbBean GPMDbBean gpmDbBean = new GPMDbBean(); //set the GPMDbType gpmDbBean.setGpmDbType(gpmDbType); List<GPMDbEntryBean> gpmDbEntryBeanList = new ArrayList<GPMDbEntryBean>(); GPMDbEntryBean gpmDbEntryBean = null; String releaseDate = null; String nominalMass = null; String sequenceAssembly = null; String sequenceSource = null; String maximumLoge = null; String enspAccession = null; String ensgAccession = null; String enstAccession = null; String chromName = null; int chromStart = 0; int chromEnd = 0; String chromStrand = null; int modifiedPeptideObs = 0; int pos = 0; String res = null; int obs = 0; String line = null; int counterIndex = 0; while ((line = reader.readLine()) != null) { if (StringUtils.isNotBlank(line) && !StringUtils.startsWith(line, "#")) { //start to parse the head of psyt file from gpm if (StringUtils.startsWith(line, RELEASE_DATE)) { String[] dateLineFields = DMUtil.splitByDelims(line, COLON_DELIM); if (dateLineFields.length != 2) { throw new DMFileException("Invalid gpm psyt file, the release date is not specified"); } //There are a total of 26 release dates, just add the first release date as a primary release date if (StringUtils.isBlank(releaseDate)) { releaseDate = dateLineFields[1]; gpmDbBean.setReleaseToken(releaseDate); } } if (StringUtils.startsWith(line, NOMINAL_MASS)) { String[] nominalMassLineFields = DMUtil.splitByDelims(line, COLON_DELIM); if (nominalMassLineFields.length != 2) { throw new DMFileException( "Invalid gpm psyt file, the nominal mass number is not specified"); } if (StringUtils.isBlank(nominalMass)) { nominalMass = nominalMassLineFields[1]; gpmDbBean.setNominalMass(nominalMass); } } if (StringUtils.startsWith(line, SEQUENCE_ASEMBLY) || StringUtils.startsWith(line, SEQUENCE_ASEMBLY)) { String[] sequenceAssemblyLineFields = DMUtil.splitByDelims(line, COLON_DELIM); if (sequenceAssemblyLineFields.length != 2) { throw new DMFileException( "Invalid gpm psyt file, the sequence assembly version is not specified"); } if (StringUtils.isBlank(sequenceAssembly)) { sequenceAssembly = sequenceAssemblyLineFields[1]; gpmDbBean.setSequenceAssembly(sequenceAssembly); } } if (StringUtils.startsWith(line, SEQUENCE_SOURCE)) { String[] sequenceSourceLineFields = DMUtil.splitByDelims(line, COLON_DELIM); if (sequenceSourceLineFields.length != 2) { throw new DMFileException( "Invalid gpm psyt file, the sequence source number is not specified"); } if (StringUtils.isBlank(sequenceSource)) { sequenceSource = sequenceSourceLineFields[1]; gpmDbBean.setSequenceSource(sequenceSource); } } if (StringUtils.startsWith(line, MAXIMUM_LOG_E)) { String[] maxLogELineFields = DMUtil.splitByDelims(line, COLON_DELIM); if (maxLogELineFields.length != 2) { throw new DMFileException( "Invalid gpm psyt file, the maximum log(e) number is not specified"); } if (StringUtils.isBlank(maximumLoge)) { maximumLoge = maxLogELineFields[1]; gpmDbBean.setMaximumLoge(maximumLoge); } } if (StringUtils.startsWith(line, PROTEIN)) { gpmDbEntryBean = new GPMDbEntryBean(); //create the primary dbsource bean; DBSourceBean gpmDbSourceBean = new DBSourceBean(); //all genes come from the gpm psty file as a datasource if (gpmDbType.equals(GPMDbType.GPMDB_PSYT)) { gpmDbSourceBean.setDbName(DbAcType.GPMPSYT.type()); } if (gpmDbType.equals(GPMDbType.GPMDB_LYS)) { gpmDbSourceBean.setDbName(DbAcType.GPMLYS.type()); } if (gpmDbType.equals(GPMDbType.GPMDB_NTA)) { gpmDbSourceBean.setDbName(DbAcType.GPMNTA.type()); } gpmDbSourceBean.setPrimaryEvidences(true); gpmDbEntryBean.setPrimaryDbSourceBean(gpmDbSourceBean); //parse the protein accession enspAccession = DMUtil.splitStrByDelim(line, COLON_DELIM)[1]; if (StringUtils.isBlank(enspAccession)) { throw new DMFileException("The protein accession number not found"); } else { //create an identified accession bean AccessionBean identAccessionBean = createAcBean(enspAccession, DbAcType.Protein.type()); gpmDbEntryBean.setIdentifiedAccessionBean(identAccessionBean); } } //parse gene accession if (StringUtils.startsWith(line, GENE)) { ensgAccession = DMUtil.splitStrByDelim(line, COLON_DELIM)[1]; } //parse transcript accession if (StringUtils.startsWith(line, TRANSCRIPT)) { enstAccession = DMUtil.splitStrByDelim(line, COLON_DELIM)[1]; } //chromosome fields if (StringUtils.startsWith(line, CHROMOSOME)) { String[] chromLineFields = DMUtil.splitByDelims(line, "\t", "\r", "\n"); for (String chromField : chromLineFields) { if (StringUtils.startsWith(chromField, CHROMOSOME)) { String[] chromNameFileds = DMUtil.splitStrByDelim(chromField, COLON_DELIM); if (chromNameFileds.length == 2) { chromName = chromNameFileds[1].trim(); } else { chromName = NameType.UNKNOWN.cn(); } } if (StringUtils.startsWith(chromField, CHROM_START)) { String[] chromStartFields = DMUtil.splitStrByDelim(chromField, COLON_DELIM); if (chromStartFields.length == 2) { chromStart = Integer.valueOf(chromStartFields[1].trim()); } } if (StringUtils.startsWith(chromField, CHROM_END)) { String[] chromEndFields = DMUtil.splitStrByDelim(chromField, COLON_DELIM); if (chromEndFields.length == 2) { chromEnd = Integer.valueOf(chromEndFields[1].trim()); } } if (StringUtils.startsWith(chromField, CHROM_STRAND)) { String[] chromStrandFields = DMUtil.splitStrByDelim(chromField, COLON_DELIM); if (chromStrandFields.length == 2) { chromStrand = chromStrandFields[1].trim(); } } } //create GeneBean GeneBean geneBean = new GeneBean(); geneBean.setEnsgAccession(ensgAccession); geneBean.setChromosome(chromName); geneBean.setStartPosition(chromStart); geneBean.setEndPosition(chromEnd); geneBean.setStrand(chromStrand); gpmDbEntryBean.setGeneBean(geneBean); } //Gene or Protein Desc if (StringUtils.startsWith(line, DES_ENSG_ENSP)) { String[] desLineFields = DMUtil.splitByDelims(line, COLON_DELIM); if (desLineFields.length == 2) { String descValue = desLineFields[1]; String[] descValueFields = DMUtil.splitByDelims(descValue, ",", "\t"); String desc = ""; if (descValueFields.length >= 2) { gpmDbEntryBean.getGeneBean().setDisplayName(descValueFields[0]); for (int i = 1; i < descValueFields.length; i++) { desc += descValueFields[i]; } } else { desc = descValueFields[0]; } gpmDbEntryBean.getGeneBean().setDescription(StringUtils.trim(desc)); } else { gpmDbEntryBean.getGeneBean().setDisplayName(NameType.UNKNOWN.cn()); } } //we add non evidence bean first once we meet the tag : modified_peptide_obs if (StringUtils.startsWith(line, MODIFIED_PEPTIDE_OBS)) { //create dbsource and accession entry bean List<DbSourceAcEntryBean> dbSourceAcEntryBeanList = parseDBSourceAcEntryBeans(enspAccession, ensgAccession, enstAccession); gpmDbEntryBean.setDbSourceAcEntryBeans(dbSourceAcEntryBeanList); if (gpmDbType.equals(GPMDbType.GPMDB_PSYT)) { //create a non phs s evidence bean PTMEvidenceBean nonPhsSEvidenceBean = createNonEvidenceBean(enspAccession, nominalMass, maximumLoge, GPMPTMSubType.PHS_S, gpmDbType); gpmDbEntryBean.setPtmEvidenceBean(nonPhsSEvidenceBean, GPMPTMSubType.NON_PHS_S); //create a non phs t evidence bean PTMEvidenceBean nonPhsTEvidenceBean = createNonEvidenceBean(enspAccession, nominalMass, maximumLoge, GPMPTMSubType.PHS_T, gpmDbType); gpmDbEntryBean.setPtmEvidenceBean(nonPhsTEvidenceBean, GPMPTMSubType.NON_PHS_T); //create a non phs y evidence bean PTMEvidenceBean nonPhsYEvidenceBean = createNonEvidenceBean(enspAccession, nominalMass, maximumLoge, GPMPTMSubType.PHS_Y, gpmDbType); gpmDbEntryBean.setPtmEvidenceBean(nonPhsYEvidenceBean, GPMPTMSubType.NON_PHS_Y); } else if (gpmDbType.equals(GPMDbType.GPMDB_LYS)) { // Create Non LYS evidence bean first PTMEvidenceBean nonLysEvidenceBean = createNonEvidenceBean(enspAccession, nominalMass, maximumLoge, GPMPTMSubType.LYS, gpmDbType); gpmDbEntryBean.setPtmEvidenceBean(nonLysEvidenceBean, GPMPTMSubType.NON_LYS); } else if (gpmDbType.equals(GPMDbType.GPMDB_NTA)) { //create non nta evidence bean first PTMEvidenceBean nonNtaEvidenceBean = createNonEvidenceBean(enspAccession, nominalMass, maximumLoge, GPMPTMSubType.NTA, gpmDbType); gpmDbEntryBean.setPtmEvidenceBean(nonNtaEvidenceBean, GPMPTMSubType.NON_NTA); } gpmDbEntryBeanList.add(gpmDbEntryBean); counterIndex = gpmDbEntryBeanList.size() - 1; } //parse the RES: S, T, Y or Others and POS and OBS if (StringUtils.startsWith(line, POS)) { String[] posLineFields = DMUtil.splitByDelims(line, "\t", "\r", "\n"); for (String posLineField : posLineFields) { if (StringUtils.startsWith(posLineField, POS)) { String[] posFileds = DMUtil.splitByDelims(posLineField, COLON_DELIM); if (posFileds.length == 2) { pos = Integer.valueOf(posFileds[1]); } else { throw new DMFileException("The position value not found."); } } if (StringUtils.startsWith(posLineField, RES)) { String[] resFileds = DMUtil.splitByDelims(posLineField, COLON_DELIM); if (resFileds.length == 2) { res = resFileds[1]; } else { throw new DMFileException("The res value not found."); } } if (StringUtils.startsWith(posLineField, OBS)) { String[] obsFileds = DMUtil.splitByDelims(posLineField, COLON_DELIM); if (obsFileds.length == 2) { obs = Integer.valueOf(obsFileds[1].trim()); } else { throw new DMFileException("The obs value not found."); } } } PTMEvidenceBean ptmEvidenceBean = createPTMEvidenceBean(nominalMass, pos, res, obs, enspAccession, maximumLoge, gpmDbType); //Identify the type GPMPTMSubType ptmSubType = GPMPTMSubType.PHS_S; if (gpmDbType.equals(GPMDbType.GPMDB_PSYT)) { ptmSubType = GPMPTMSubType.fromType(res); } else if (gpmDbType.equals(GPMDbType.GPMDB_LYS)) { ptmSubType = GPMPTMSubType.LYS; } else if (gpmDbType.equals(GPMDbType.GPMDB_NTA)) { ptmSubType = GPMPTMSubType.NTA; } //add the ptm evidence bean gpmDbEntryBeanList.get(counterIndex).setPtmEvidenceBean(ptmEvidenceBean, ptmSubType); } } } logger.info("The total entry size of the " + gpmDbType.type() + " is :" + gpmDbEntryBeanList.size()); gpmDbBean.setPgmDbEntryBeans(gpmDbEntryBeanList); return gpmDbBean; } catch (Exception ex) { logger.error(ex); throw new DMParserException(ex); } finally { if (ins != null) { try { ins.close(); } catch (Exception e) { //ignore whatever caught. } } } }
From source file:com.iyonger.apm.web.controller.FileEntryController.java
/** * Save a fileEntry and return to the the path. * * * @param fileEntry file to be saved * @param targetHosts target host parameter * @param validated validated the script or not, 1 is validated, 0 is not. * @param createLibAndResource true if lib and resources should be created as well. * @param model model/*from w w w . j a v a 2s.c om*/ * @return redirect:/script/list/${basePath} */ @RequestMapping(value = "/save/**", method = RequestMethod.POST) public String save(FileEntry fileEntry, @RequestParam String targetHosts, @RequestParam(defaultValue = "0") String validated, @RequestParam(defaultValue = "false") boolean createLibAndResource, ModelMap model) { User user = getCurrentUser(); if (fileEntry.getFileType().getFileCategory() == FileCategory.SCRIPT) { Map<String, String> map = Maps.newHashMap(); map.put("validated", validated); map.put("targetHosts", StringUtils.trim(targetHosts)); fileEntry.setProperties(map); } fileEntryService.save(user, fileEntry); String basePath = getPath(fileEntry.getPath()); if (createLibAndResource) { fileEntryService.addFolder(user, basePath, "lib", getMessages("script.commit.libFolder")); fileEntryService.addFolder(user, basePath, "resources", getMessages("script.commit.resourceFolder")); } model.clear(); //return "redirect:/script/list/" + basePath; return "redirect:/script/detail/" + fileEntry.getPath() + "?r=-1"; }
From source file:com.myGengo.alfresco.translate.MyGengoTranslationServiceImpl.java
@Override public void refreshTranslationComments(NodeRef jobRef, MyGengoAccount accountInfo) throws MyGengoServiceException { MyGengoClient myGengo = new MyGengoClient(accountInfo.getPublicKey(), accountInfo.getPrivateKey(), this.useSandbox); try {/*from w w w . j a v a2 s.c o m*/ Integer jobId = Integer.valueOf((String) nodeService.getProperty(jobRef, MyGengoModel.PROP_JOBID)); List<ChildAssociationRef> comments = getComments(jobRef); List<CommentData> repoComments = new ArrayList<CommentData>(comments.size()); for (ChildAssociationRef childAssociationRef : comments) { NodeRef commentRef = childAssociationRef.getChildRef(); String contentString = contentService.getReader(commentRef, ContentModel.PROP_CONTENT) .getContentString(); //remove html tags because myGengo only uses text/plain comments contentString = HtmlToText.htmlToPlainText(StringUtils.trim(contentString)); long timestamp = 0; if (nodeService.hasAspect(commentRef, MyGengoModel.ASPECT_COMMENT)) { timestamp = (Long) nodeService.getProperty(commentRef, MyGengoModel.PROP_COMMENTMODIFIEDTIME); } repoComments.add(new CommentData(contentString, timestamp, commentRef)); } JSONObject response = myGengo.getTranslationJobComments(jobId); if (response.has("response")) { if (LOGGER.isDebugEnabled()) { LOGGER.debug("comment job: " + response.toString()); } JSONArray jsonThread = response.getJSONObject("response").getJSONArray("thread"); List<CommentData> addComments = new ArrayList<CommentData>(); for (int i = 0; i < jsonThread.length(); i++) { JSONObject jsonComment = jsonThread.getJSONObject(i); String commentText = jsonComment.getString("body"); long timestamp = jsonComment.getLong("ctime"); CommentData jsonCommentData = new CommentData( HtmlToText.htmlToPlainText(StringUtils.trim(commentText)), timestamp); boolean add = true; for (CommentData commentData : repoComments) { if (!commentData.equals(jsonCommentData)) { //comment not in sync if (commentData.comment.equalsIgnoreCase(commentText)) { //comment text known, timestamp needs to be updated Map<QName, Serializable> aspectProperties = new HashMap<QName, Serializable>(1, 1.0f); aspectProperties.put(MyGengoModel.PROP_COMMENTMODIFIEDTIME, timestamp); nodeService.addAspect(commentData.commentRef, MyGengoModel.ASPECT_COMMENT, aspectProperties); add = false; } } else { add = false; } } if (add) { addComments.add(jsonCommentData); } } for (CommentData addComment : addComments) { // text & timestamp unknown NodeRef commentsFolder = getOrCreateCommentsFolder(jobRef); String name = GUID.generate(); ChildAssociationRef createdNode = nodeService.createNode(commentsFolder, ContentModel.ASSOC_CONTAINS, QName.createQName(NamespaceService.CONTENT_MODEL_1_0_URI, QName.createValidLocalName(name)), ForumModel.TYPE_POST); ContentWriter writer = contentService.getWriter(createdNode.getChildRef(), ContentModel.PROP_CONTENT, true); writer.setMimetype("text/plain"); writer.putContent(addComment.comment); Map<QName, Serializable> aspectProperties = new HashMap<QName, Serializable>(1, 1.0f); aspectProperties.put(MyGengoModel.PROP_COMMENTMODIFIEDTIME, addComment.timestamp); nodeService.addAspect(createdNode.getChildRef(), MyGengoModel.ASPECT_COMMENT, aspectProperties); } } } catch (Exception e) { LOGGER.error("refreshJobComments failed", e); throw new MyGengoServiceException("refreshJobComments failed", e); } }
From source file:io.cloudslang.lang.systemtests.BindingScopeTest.java
@Test public void testFlowContextInStepPublishSection() throws Exception { URL resource = getClass().getResource("/yaml/binding_scope_flow_context_in_step_publish.sl"); URI operation = getClass().getResource("/yaml/binding_scope_op.sl").toURI(); Set<SlangSource> path = Sets.newHashSet(SlangSource.fromFile(operation)); // pre-validation - step expression uses flow var name SlangSource flowSource = SlangSource.fromFile(resource.toURI()); Executable flowExecutable = slangCompiler.preCompile(flowSource); String flowVarName = "flow_var"; assertEquals("Input name should be: " + flowVarName, flowVarName, flowExecutable.getInputs().get(0).getName()); @SuppressWarnings("unchecked") List<Output> stepPublishValues = (List<Output>) ((Flow) flowExecutable).getWorkflow().getSteps().getFirst() .getPostStepActionData().get(SlangTextualKeys.PUBLISH_KEY); assertEquals("Step expression should contain: " + flowVarName, flowVarName, StringUtils.trim(ExpressionUtils.extractExpression(stepPublishValues.get(0).getValue().get()))); final CompilationArtifact compilationArtifact = slang.compile(flowSource, path); final Map<String, Value> userInputs = Collections.emptyMap(); final Set<SystemProperty> systemProperties = Collections.emptySet(); exception.expect(RuntimeException.class); exception.expectMessage("flow_var"); exception.expectMessage("not defined"); // trigger ExecutionPlan triggerWithData(compilationArtifact, userInputs, systemProperties); }
From source file:gtu._work.ui.ObnfInsertCreaterUI.java
private void executeBtnAction() { try {//w w w. j a v a2 s .co m tableName = StringUtils.trimToEmpty(tableNameText.getText()); String obnfStr = obnfArea.getText(); if (StringUtils.isBlank(tableName)) { JCommonUtil._jOptionPane_showMessageDialog_error("tableName"); return; } if (StringUtils.isBlank(obnfStr)) { JCommonUtil._jOptionPane_showMessageDialog_error("obnfStr"); return; } Map<String, String> columnMap = new HashMap<String, String>(); Map<String, String> pkMap = new HashMap<String, String>(); Pattern objPattern2 = Pattern.compile("(\\w+)\\s*\\=\\s*'([^']*)'"); Matcher matcher = objPattern2.matcher(obnfStr); while (matcher.find()) { String dbField = StringUtils.trim(matcher.group(1)).toLowerCase(); String value = StringUtils.defaultString(matcher.group(2)); System.out.println("SQL:[" + dbField + "] = [" + value + "]"); this.addToColumnMap(dbField, value, columnMap, pkMap); } Pattern objPattern = Pattern.compile("(\\w+)\\=([^\\,\\{\\}\\[\\]]*)"); matcher = objPattern.matcher(obnfStr); while (matcher.find()) { String g1 = StringUtils.trim(matcher.group(1)); if (g1.indexOf("_") != -1) { continue; } String dbField = StringUtils.trim(StringUtilForDb.javaToDbField(g1)).toLowerCase(); String value = StringUtils.defaultString(matcher.group(2)); String tmpVal = StringUtils.trimToEmpty(value); if (tmpVal.startsWith("'") && tmpVal.endsWith("'")) { continue; } System.out.println("JAVA:[" + dbField + "] = [" + value + "]"); this.addToColumnMap(dbField, value, columnMap, pkMap); } this.putToDbFieldList(pkMap, columnMap); } catch (Exception ex) { JCommonUtil.handleException(ex); } }
From source file:io.ecarf.core.utils.LogParser.java
/** * Dictionary//w w w. j av a 2 s . c o m * @param dStats * @param line */ private void extractDictionaryStats(DictionaryStats dStats, String line) { if (line.contains(MEM_USE)) { double[] values = this.extractAndGetMemoryDictionaryItems(line); double memory = values[0]; dStats.memoryFootprint.add(memory); if (values[1] > 0) { dStats.memoryUsage.add(new MemUsage((int) values[1], memory)); } } else if (line.contains(DIC_SIZE)) { int size = this.extractDictionarySize(line); dStats.memoryUsage.add(new MemUsage(size, dStats.getLatestMemoryUsage())); } if (line.contains(DIC_ASSEMBLE)) { //Successfully assembled dictionary with size: 53550116, max resourceId: 54291281, memory usage: 14.449545934796333GB, timer: 5.010 min dStats.items = Integer.parseInt(StringUtils.substringBetween(line, DIC_ASSEMBLE, MAX_RES_ID)); dStats.maxResourceId = Integer.parseInt(StringUtils.substringBetween(line, MAX_RES_ID, MEM_USE)); dStats.assemble = this.extractAndGetTimer(line, TIMER_PREFIX); } /** * term.dictionary.TermDictionaryConcurrent - Creating non concurrent dictionary, memory usage: 11.166048146784306 term.dictionary.TermDictionaryConcurrent - #TIMER finished creating non concurrent dictionary, memory usage: 13.966991074383259GB, timer: 1.577 min processor.dictionary.AssembleDictionaryTask - Successfully created non concurrent dictionary for serialization, memory usage: 13.966991074383259GB, timer: 6.992 min core.utils.Utils - Serializing object of class: class io.ecarf.core.term.dictionary.TermDictionaryCore to file: /tmp/dbpedia_dictionary_8c.kryo.gz, with compress = true term.dictionary.TermDictionary - TIMER# serialized dictionary to file: /tmp/dbpedia_dictionary_8c.kryo.gz, in: 3.274 min processor.dictionary.AssembleDictionaryTask - Successfully serialized dictionary with size: 53550116, memory usage: 13.964397609233856GB, timer: 10.27 min */ if (line.contains(NON_CON_TIMER)) { dStats.nonConcurrent = this.extractAndGetTimer(line, TIMER_PREFIX); } else if (line.contains(TERM_DIC_TIMER)) { dStats.serialize = this.extractAndGetTimer(line, " in:"); } else if (line.contains(SCHEMA_TERMS)) { //processor.dictionary.AssembleDictionaryTask - Schema terms added to the dictionary, final size: 53550784 , memory usage: 14.449545934796333GB dStats.itemsAfterSchema = Integer .parseInt(StringUtils.trim(StringUtils.substringBetween(line, SCHEMA_TERMS, MEM_USE))); } //processor.dictionary.AssembleDictionarySubTask - Processing: 1718527 term parts , memory usage: 17.80723436176777GB, timer: 4.839 s if (line.contains(TERM_PARTS)) { dStats.parts += Integer .parseInt(StringUtils.trim(StringUtils.substringBetween(line, PROCESSING, TERM_PARTS))); } }
From source file:net.rim.ejde.internal.ui.editors.model.AlternateEntryPointDetails.java
private void updateAepTitle() { List<String> aepTitles = _fMasterSection.getAepTitles(); String aepTitle = StringUtils.trim(_titleField.getText()); if (!StringUtils.isBlank(aepTitle) && !aepTitles.contains(aepTitle)) { _aep.setTitle(aepTitle);/*from www . ja v a 2 s . com*/ } }
From source file:gov.nih.nci.cabig.caaers.service.ProxyWebServiceFacade.java
private String syncStudy(String operationName, String sponsorIdentifierValue) { try {//from w w w .ja v a 2 s . co m //invoke the webservice Map<String, String> criteriaMap = new HashMap<String, String>(); criteriaMap.put("nciDocumentNumber", sponsorIdentifierValue); String correlationId = RandomStringUtils.randomAlphanumeric(15); String message = buildMessage(correlationId, "adeers", "study", operationName, "async", criteriaMap); String xmlStudyDetails = simpleSendAndReceive(message); if (log.isDebugEnabled()) log.debug("result for getStudyDetails : for (" + sponsorIdentifierValue + ") :" + xmlStudyDetails); String studyDbId = xsltTransformer.toText(xmlStudyDetails, "xslt/c2a_generic_response.xslt"); studyDbId = StringUtils.trim(studyDbId); if (log.isInfoEnabled()) log.info("Got study details : Study DB ID :" + studyDbId); return studyDbId; } catch (Exception e) { log.error("Error occurred while invoking ServiceMix Study Details : " + e.getMessage(), e); return "Import study failed:" + e.getMessage(); } }
From source file:jp.co.opentone.bsol.linkbinder.view.action.control.CorresponPageElementControl.java
/** * ??????./*from ww w . ja va2 s . c o m*/ * <ul> * <li>??</li> * <li></li> * <li>?REQUEST_FOR_CHECK.UNDER_CONSIDERATION.REQUEST_FOR_APPROVAL</li> * <li>?</li> * </ul> */ private void setSystemAdminRequestingWorkflowPattern() { // ?1???None??Checker/Approver??? workFlowLink = false; List<Workflow> workflow = correspon.getWorkflows(); if (SystemConfig.getValue(KEY_PATTERN_1) .equals(StringUtils.trim(correspon.getCorresponType().getWorkflowPattern().getWorkflowCd()))) { for (Workflow w : workflow) { WorkflowProcessStatus processStatus = w.getWorkflowProcessStatus(); if (WorkflowProcessStatus.NONE == processStatus) { workFlowLink = true; } } } else if (SystemConfig.getValue(KEY_PATTERN_2) .equals(StringUtils.trim(correspon.getCorresponType().getWorkflowPattern().getWorkflowCd()))) { workFlowLink = isApproverProcessStatusNone(workflow); } }
From source file:com.bluexml.xforms.actions.AbstractWorkflowAction.java
/** * Tells whether the current user is a legitimate actor for this task. * // w ww. j av a 2 s.c o m * @param taskBean * @param properties * @return true if the user is the actorId or belongs to the pooled actors */ protected boolean validateCurrentUser(WorkflowTaskInfoBean taskBean, HashMap<QName, Serializable> properties) { String actorIds = taskBean.getActorId(); if (actorIds != null) { // #1514: support for multiple groups/users via comma-separated list String[] actors = StringUtils.split(actorIds, ","); for (String anActor : actors) { anActor = resolveActorId(StringUtils.trim(anActor), properties); if (anActor.equals("initiator")) { // #1531 return true; } if (anActor.startsWith("#{")) { // oups Xform can't interpret this variable we hope that current user can execute this transition return true; } if (StringUtils.equals(anActor, userName)) { return true; } } } String pooledActors = taskBean.getPooledActors(); if (pooledActors == null) { return false; } String[] actors = StringUtils.split(pooledActors, ","); for (String anActor : actors) { anActor = StringUtils.trim(anActor); // search the registered task groups amongst the user's groups Set<String> userGroups = controller.systemGetContainingGroups(transaction, userName); if (userGroups != null) { // <-- can this ever not be so ? String authorizedGroup = PermissionService.GROUP_PREFIX + anActor; for (String aUserGroup : userGroups) { if (StringUtils.equals(aUserGroup, authorizedGroup)) { return true; } } } } return false; }